Yiming Wang

Works (16)

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2021 review

Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis

[Review of ]. CHEMICAL REVIEWS, 121(4), 2545–2647.

By: P. Nguyen, A. Ramamoorthy *, B. Sahoo *, J. Zheng *, P. Faller *, J. Straub *, L. Dominguez *, J. Shea * ...

Sources: Web Of Science, ORCID
Added: March 29, 2021

2021 journal article

CATCH Peptides Coassemble into Structurally Heterogeneous beta-Sheet Nanofibers with Little Preference to beta-Strand Alignment

JOURNAL OF PHYSICAL CHEMISTRY B, 125(16), 4004–4015.

By: K. Wong *, Q. Shao*, Y. Wang, D. Seroski*, R. Liu *, A. Lint*, G. Hudalla *, C. Hall , A. Paravastu *

Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

De novo design of peptides that coassemble into beta sheet-based nanofibrils

SCIENCE ADVANCES, 7(36).

By: X. Xiao, Y. Wang, D. Seroski*, K. Wong *, R. Liu *, A. Paravastu *, G. Hudalla *, C. Hall 

Sources: Web Of Science, ORCID
Added: September 27, 2021

2021 article

Engineering beta-Sheet Peptide Coassemblies for Biomaterial Applications

Wong, K. M., Robang, A. S., Lint, A. H., Wang, Y., Dong, X., Xiao, X., … Paravastu, A. K. (2021, December 14). JOURNAL OF PHYSICAL CHEMISTRY B, Vol. 12.

By: K. Wong *, A. Robang*, A. Lint*, Y. Wang, X. Dong, X. Xiao, D. Seroski*, R. Liu * ...

Sources: Web Of Science, ORCID
Added: January 3, 2022

2021 journal article

Structural insights into peptide self-assembly using photo-induced crosslinking experiments and discontinuous molecular dynamics

AICHE JOURNAL, 67(3).

By: S. Bunce *, Y. Wang, S. Radford *, A. Wilson* & C. Hall 

author keywords: amyloid‐ forming peptide; discontinuous molecular dynamics; peptide self assembly; photo‐ induced crosslinking
Sources: Web Of Science, ORCID
Added: November 24, 2020

2020 journal article

Anatomy of a selectively coassembled beta-sheet peptide nanofiber

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(9), 4710–4717.

By: Q. Shao, K. Wong *, D. Seroski*, Y. Wang, R. Liu *, A. Paravastu *, G. Hudalla *, C. Hall 

author keywords: coassembly; peptides; fibril; beta-barrel; coarse-grained simulation
Sources: Web Of Science, ORCID
Added: March 30, 2020

2020 journal article

Development of a coarse-grained lipid model, LIME 2.0, for DSPE using multistate iterative Boltzmann inversion and discontinuous molecular dynamics simulations

FLUID PHASE EQUILIBRIA, 521.

By: K. Wang, Y. Wang & C. Hall 

author keywords: Coarse-graining; Multi-state iterative Boltzmann inversion; Multiple square well; Discontinuous molecular dynamics; simulation; Lipid bilayer
Sources: Web Of Science, ORCID
Added: September 7, 2020

2020 journal article

Molecular complementarity and structural heterogeneity within co-assembled peptide beta-sheet nanofibers

NANOSCALE, 12(7), 4506–4518.

By: K. Wong *, Y. Wang, D. Seroski*, G. Larkin*, A. Mehta*, G. Hudalla *, C. Hall , A. Paravastu *

Sources: Web Of Science, ORCID
Added: May 26, 2020

2019 journal article

Differential Misfolding Properties of Glaucoma-Associated Olfactomedin Domains from Humans and Mice

BIOCHEMISTRY, 58(13), 1718–1727.

By: A. Patterson-Orazem*, S. Hill*, Y. Wang, I. Dominic*, C. Hall  & R. Lieberman *

Sources: Web Of Science, ORCID
Added: April 22, 2019

2019 journal article

Molecular insights into the surface-catalyzed secondary nucleation of amyloid-beta(40) (A beta(40)) by the peptide fragment A beta(16-22)

SCIENCE ADVANCES, 5(6).

By: S. Bunce *, Y. Wang, K. Stewart*, A. Ashcroft *, S. Radford *, C. Hall , A. Wilson*

Sources: Web Of Science, ORCID
Added: July 22, 2019

2019 journal article

Thermodynamic phase diagram of amyloid-β (16–22) peptide

Proceedings of the National Academy of Sciences, 116(6), 2091–2096.

By: Y. Wang, S. Bunce *, S. Radford *, A. Wilson*, S. Auer * & C. Hall 

author keywords: phase diagram; solubility; amyloid; protein aggregation; coarse-grained simulation
Sources: Web Of Science, Crossref, ORCID
Added: February 18, 2019

2018 journal article

Seeding and cross-seeding fibrillation of N-terminal prion protein peptides PrP(120-144)

Protein Science, 27(7), 1304–1313.

By: Y. Wang & C. Hall 

author keywords: coarse-grained molecular dynamics; cross-seeding aggregation; prion protein fragments; amyloid formation; fibril elongation
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2018 journal article

Simulations and Experiments Delineate Amyloid Fibrilization by Peptides Derived from Glaucoma-Associated Myocilin

JOURNAL OF PHYSICAL CHEMISTRY B, 122(22), 5845–5850.

By: Y. Wang, Y. Gao, S. Hill, D. Huard, M. Tomlin, R. Lieberman, A. Paravastu, C. Hall 

Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Aggregation of A beta(17-36) in the Presence of Naturally Occurring Phenolic Inhibitors Using Coarse-Grained Simulations

JOURNAL OF MOLECULAR BIOLOGY, 429(24), 3893–3908.

By: Y. Wang, D. Latshaw  n & C. Hall 

author keywords: discontinuous molecular dynamics; protein aggregation; polyphenol; amyloid beta; inhibitory mechanism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Extended Concerted Rotation Technique Enhances the Sampling Efficiency of the Computational Peptide-Design Algorithm

JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 13(11), 5709–5720.

By: X. Xiao, Y. Wang, J. Leonard * & C. Hall 

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

N-terminal Prion Protein Peptides (PrP(120-144)) Form Parallel In-register beta-Sheets via Multiple Nucleation-dependent Pathways

JOURNAL OF BIOLOGICAL CHEMISTRY, 291(42), 22093–22105.

By: Y. Wang, Q. Shao & C. Hall 

author keywords: fibril; kinetics; prion disease; protein aggregation; thermodynamics; amino acid substitution; amyloid core; discontinuous molecular dynamics
Sources: Web Of Science, ORCID
Added: August 6, 2018