Yiming Wang
Works (16)
Updated: July 25th, 2023 21:15
2021 review
Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis
[Review of ]. CHEMICAL REVIEWS, 121(4), 2545–2647.
co-author countries:
China 🇨🇳 Germany 🇩🇪 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Israel 🇮🇱 Italy 🇮🇹 Mexico 🇲🇽 Poland 🇵🇱 United States of America 🇺🇸 Viet Nam 🇻🇳
MeSH headings : Alzheimer Disease / metabolism; Alzheimer Disease / pathology; Amyloid / chemistry; Amyloid / metabolism; Amyloid beta-Peptides / chemistry; Amyloid beta-Peptides / metabolism; Amyotrophic Lateral Sclerosis / genetics; Amyotrophic Lateral Sclerosis / metabolism; Amyotrophic Lateral Sclerosis / pathology; Animals; Diabetes Mellitus, Type 2 / metabolism; Diabetes Mellitus, Type 2 / pathology; Humans; Islet Amyloid Polypeptide / chemistry; Islet Amyloid Polypeptide / metabolism; Models, Molecular; Neurodegenerative Diseases / metabolism; Neurodegenerative Diseases / pathology; Parkinson Disease / metabolism; Parkinson Disease / pathology; Protein Aggregation, Pathological; Proteostasis Deficiencies / metabolism; Superoxide Dismutase-1 / chemistry; Superoxide Dismutase-1 / metabolism; alpha-Synuclein / chemistry; alpha-Synuclein / metabolism; tau Proteins / chemistry; tau Proteins / metabolism
Sources: Web Of Science, ORCID
Added: March 29, 2021
2021 journal article
CATCH Peptides Coassemble into Structurally Heterogeneous beta-Sheet Nanofibers with Little Preference to beta-Strand Alignment
JOURNAL OF PHYSICAL CHEMISTRY B, 125(16), 4004–4015.
co-author countries:
United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Molecular Dynamics Simulation; Nanofibers; Peptides; Protein Conformation, beta-Strand
Sources: Web Of Science, ORCID
Added: June 10, 2021
2021 journal article
De novo design of peptides that coassemble into beta sheet-based nanofibrils
SCIENCE ADVANCES, 7(36).
co-author countries:
United States of America 🇺🇸
www.science.org (publisher PDF)
Sources: Web Of Science, ORCID
Added: September 27, 2021
2021 article
Engineering beta-Sheet Peptide Coassemblies for Biomaterial Applications
Wong, K. M., Robang, A. S., Lint, A. H., Wang, Y., Dong, X., Xiao, X., … Paravastu, A. K. (2021, December 14). JOURNAL OF PHYSICAL CHEMISTRY B, Vol. 12.
co-author countries:
United States of America 🇺🇸
MeSH headings : Biocompatible Materials; Magnetic Resonance Spectroscopy; Nanostructures; Peptides; Protein Conformation, beta-Strand
Sources: Web Of Science, ORCID
Added: January 3, 2022
2021 journal article
Structural insights into peptide self-assembly using photo-induced crosslinking experiments and discontinuous molecular dynamics
AICHE JOURNAL, 67(3).
co-author countries:
United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: amyloid‐ forming peptide; discontinuous molecular dynamics; peptide self assembly; photo‐ induced crosslinking
Sources: Web Of Science, ORCID
Added: November 24, 2020
2020 journal article
Anatomy of a selectively coassembled beta-sheet peptide nanofiber
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(9), 4710–4717.
co-author countries:
United States of America 🇺🇸
author keywords: coassembly; peptides; fibril; beta-barrel; coarse-grained simulation
MeSH headings : Amyloid / chemistry; Computer Simulation; Nanofibers / chemistry; Polymerization; Protein Conformation, beta-Strand; Protein Multimerization; Static Electricity
Sources: Web Of Science, ORCID
Added: March 30, 2020
2020 journal article
Development of a coarse-grained lipid model, LIME 2.0, for DSPE using multistate iterative Boltzmann inversion and discontinuous molecular dynamics simulations
FLUID PHASE EQUILIBRIA, 521.
co-author countries:
United States of America 🇺🇸
author keywords: Coarse-graining; Multi-state iterative Boltzmann inversion; Multiple square well; Discontinuous molecular dynamics; simulation; Lipid bilayer
Sources: Web Of Science, ORCID
Added: September 7, 2020
2020 journal article
Molecular complementarity and structural heterogeneity within co-assembled peptide beta-sheet nanofibers
NANOSCALE, 12(7), 4506–4518.
co-author countries:
United States of America 🇺🇸
MeSH headings : Nanofibers / chemistry; Peptides / chemistry; Protein Conformation, beta-Strand; Spectroscopy, Fourier Transform Infrared
Sources: Web Of Science, ORCID
Added: May 26, 2020
2019 journal article
Differential Misfolding Properties of Glaucoma-Associated Olfactomedin Domains from Humans and Mice
BIOCHEMISTRY, 58(13), 1718–1727.
co-author countries:
United States of America 🇺🇸
MeSH headings : Amyloid / chemistry; Amyloid / genetics; Animals; Crystallography, X-Ray; Cytoskeletal Proteins / chemistry; Cytoskeletal Proteins / genetics; Extracellular Matrix Proteins / chemistry; Eye Proteins / chemistry; Eye Proteins / genetics; Glaucoma / genetics; Glycoproteins / chemistry; Glycoproteins / genetics; Humans; Mice; Models, Molecular; Point Mutation; Protein Aggregates; Protein Conformation; Protein Domains; Protein Folding; Protein Stability
Sources: Web Of Science, ORCID
Added: April 22, 2019
2019 journal article
Molecular insights into the surface-catalyzed secondary nucleation of amyloid-beta(40) (A beta(40)) by the peptide fragment A beta(16-22)
SCIENCE ADVANCES, 5(6).
co-author countries:
United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
MeSH headings : Amino Acid Motifs; Amyloid beta-Peptides / chemistry; Amyloid beta-Peptides / metabolism; Catalysis; Dimerization; Kinetics; Molecular Dynamics Simulation; Peptide Fragments / chemistry; Peptide Fragments / metabolism; Protein Structure, Tertiary; Surface Properties
Sources: Web Of Science, ORCID
Added: July 22, 2019
2019 journal article
Thermodynamic phase diagram of amyloid-β (16–22) peptide
Proceedings of the National Academy of Sciences, 116(6), 2091–2096.
co-author countries:
United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: phase diagram; solubility; amyloid; protein aggregation; coarse-grained simulation
MeSH headings : Amyloid / chemistry; Amyloid / metabolism; Amyloid / ultrastructure; Amyloid beta-Peptides / chemistry; Amyloid beta-Peptides / metabolism; Peptide Fragments; Protein Aggregates; Protein Binding; Protein Conformation; Protein Multimerization; Solubility; Thermodynamics
Sources: Web Of Science, Crossref, ORCID
Added: February 18, 2019
2018 journal article
Seeding and cross-seeding fibrillation of N-terminal prion protein peptides PrP(120-144)
Protein Science, 27(7), 1304–1313.
co-author countries:
United States of America 🇺🇸
author keywords: coarse-grained molecular dynamics; cross-seeding aggregation; prion protein fragments; amyloid formation; fibril elongation
MeSH headings : Amyloid / chemistry; Animals; Arvicolinae; Circular Dichroism; Humans; Hydrophobic and Hydrophilic Interactions; Kinetics; Mesocricetus; Models, Molecular; Molecular Dynamics Simulation; Peptide Fragments / chemistry; Prion Proteins / chemistry; Protein Structure, Secondary
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018
2018 journal article
Simulations and Experiments Delineate Amyloid Fibrilization by Peptides Derived from Glaucoma-Associated Myocilin
JOURNAL OF PHYSICAL CHEMISTRY B, 122(22), 5845–5850.
co-author countries:
United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Amyloid / metabolism; Cytoskeletal Proteins / chemistry; Cytoskeletal Proteins / metabolism; Eye Proteins / chemistry; Eye Proteins / metabolism; Glaucoma, Open-Angle / metabolism; Glaucoma, Open-Angle / pathology; Glycoproteins / chemistry; Glycoproteins / metabolism; Humans; Molecular Dynamics Simulation; Nuclear Magnetic Resonance, Biomolecular; Peptides / chemistry; Peptides / metabolism; Protein Aggregates / physiology; Protein Conformation, beta-Strand
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Aggregation of A beta(17-36) in the Presence of Naturally Occurring Phenolic Inhibitors Using Coarse-Grained Simulations
JOURNAL OF MOLECULAR BIOLOGY, 429(24), 3893–3908.
co-author countries:
United States of America 🇺🇸
author keywords: discontinuous molecular dynamics; protein aggregation; polyphenol; amyloid beta; inhibitory mechanism
MeSH headings : Amyloid beta-Peptides / chemistry; Anti-Inflammatory Agents, Non-Steroidal / pharmacology; Antioxidants / pharmacology; Benzaldehydes / pharmacology; Catechin / analogs & derivatives; Catechin / pharmacology; Curcumin / pharmacology; Hydrophobic and Hydrophilic Interactions; Molecular Dynamics Simulation; Protein Aggregates / drug effects; Resveratrol; Stilbenes / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Extended Concerted Rotation Technique Enhances the Sampling Efficiency of the Computational Peptide-Design Algorithm
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 13(11), 5709–5720.
co-author countries:
United States of America 🇺🇸
MeSH headings : Algorithms; Molecular Dynamics Simulation; Peptides / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
N-terminal Prion Protein Peptides (PrP(120-144)) Form Parallel In-register beta-Sheets via Multiple Nucleation-dependent Pathways
JOURNAL OF BIOLOGICAL CHEMISTRY, 291(42), 22093–22105.
co-author countries:
United States of America 🇺🇸
author keywords: fibril; kinetics; prion disease; protein aggregation; thermodynamics; amino acid substitution; amyloid core; discontinuous molecular dynamics
MeSH headings : Amyloid / chemistry; Animals; Arvicolinae; Cricetinae; Humans; Mesocricetus; PrPC Proteins / chemistry; Protein Aggregates; Protein Structure, Secondary
Sources: Web Of Science, ORCID
Added: August 6, 2018
