@article{song_zhou_2023, title={Leveraging Scheme for Cross-Study Microbiome Machine Learning Prediction and Feature Evaluations}, volume={10}, ISSN={["2306-5354"]}, url={https://doi.org/10.3390/bioengineering10020231}, DOI={10.3390/bioengineering10020231}, number={2}, journal={BIOENGINEERING-BASEL}, author={Song, Kuncheng and Zhou, Yi-Hui}, year={2023}, month={Feb} }
 @article{wang_zhou_2022, title={A Double Penalty Model for Ensemble Learning}, volume={10}, ISSN={["2227-7390"]}, url={https://doi.org/10.3390/math10234532}, DOI={10.3390/math10234532}, number={23}, journal={MATHEMATICS}, author={Wang, Wenjia and Zhou, Yi-Hui}, year={2022}, month={Dec} }
 @article{sun_zhou_2022, title={A Machine Learning Pipeline for Mortality Prediction in the ICU}, volume={2}, url={https://doi.org/10.29337/ijdh.44}, DOI={10.29337/ijdh.44}, number={1}, journal={International Journal of Digital Health}, publisher={IJS Press}, author={Sun, Yang and Zhou, Yi-Hui}, year={2022}, month={May} }
 @article{ford_jang_chen_zhou_gallins_wright_chiu_rusyn_2022, title={A Population-Based Human In Vitro Approach to Quantify Inter-Individual Variability in Responses to Chemical Mixtures}, volume={10}, ISSN={["2305-6304"]}, url={https://doi.org/10.3390/toxics10080441}, DOI={10.3390/toxics10080441}, number={8}, journal={TOXICS}, author={Ford, Lucie C. and Jang, Suji and Chen, Zunwei and Zhou, Yi-Hui and Gallins, Paul J. and Wright, Fred A. and Chiu, Weihsueh A. and Rusyn, Ivan}, year={2022}, month={Aug} }
 @article{zhou_gallins_etheridge_jima_scholl_wright_innocenti_2022, title={A resource for integrated genomic analysis of the human liver}, volume={12}, ISSN={["2045-2322"]}, url={https://doi.org/10.1038/s41598-022-18506-z}, DOI={10.1038/s41598-022-18506-z}, number={1}, journal={SCIENTIFIC REPORTS}, author={Zhou, Yi-Hui and Gallins, Paul J. and Etheridge, Amy S. and Jima, Dereje and Scholl, Elizabeth and Wright, Fred A. and Innocenti, Federico}, year={2022}, month={Sep} }
 @article{kingston_stilp_gordon_broome_gogarten_ling_barnard_dugan-perez_ellinor_gabriel_et al._2022, title={Accounting for population structure in genetic studies of cystic fibrosis}, volume={3}, ISSN={["2666-2477"]}, DOI={10.1016/j.xhgg.2022.100117}, number={3}, journal={HUMAN GENETICS AND GENOMICS ADVANCES}, author={Kingston, Hanley and Stilp, Adrienne M. and Gordon, William and Broome, Jai and Gogarten, Stephanie M. and Ling, Hua and Barnard, John and Dugan-Perez, Shannon and Ellinor, Patrick T. and Gabriel, Stacey and et al.}, year={2022}, month={Jul} }
 @article{song_zhou_2022, title={C3NA: correlation and consensus-based cross-taxonomy network analysis for compositional microbial data}, volume={23}, ISSN={["1471-2105"]}, DOI={10.1186/s12859-022-05027-9}, number={1}, journal={BMC BIOINFORMATICS}, author={Song, Kuncheng and Zhou, Yi-Hui}, year={2022}, month={Nov} }
 @article{rosenfeld_faino_onchiri_aksit_blackman_blue_collaco_gordon_pace_raraigh_et al._2022, title={Comparing encounter-based and annualized chronic pseudomonas infection definitions in cystic fibrosis}, volume={21}, ISSN={["1873-5010"]}, DOI={10.1016/j.jcf.2021.07.020}, number={1}, journal={JOURNAL OF CYSTIC FIBROSIS}, author={Rosenfeld, Margaret and Faino, Anna V and Onchiri, Frankline and Aksit, Melis A. and Blackman, Scott M. and Blue, Elizabeth E. and Collaco, Joseph M. and Gordon, William W. and Pace, Rhonda G. and Raraigh, Karen S. and et al.}, year={2022}, month={Jan}, pages={40–44} }
 @article{raraigh_aksit_hetrick_pace_ling_o'neal_blue_zhou_bamshad_blackman_et al._2022, title={Complete CFTR gene sequencing in 5,058 individuals with cystic fibrosis informs variant-specific treatment}, volume={21}, ISSN={["1873-5010"]}, DOI={10.1016/j.jcf.2021.10.011}, number={1}, journal={JOURNAL OF CYSTIC FIBROSIS}, author={Raraigh, Karen S. and Aksit, Melis A. and Hetrick, Kurt and Pace, Rhonda G. and Ling, Hua and O'Neal, Wanda and Blue, Elizabeth and Zhou, Yi-Hui and Bamshad, Michael J. and Blackman, Scott M. and et al.}, year={2022}, month={Jan}, pages={463–470} }
 @article{ting_wright_zhou_2022, title={Fast Multivariate Probit Estimation via a Two-Stage Composite Likelihood}, volume={2}, ISSN={["1867-1772"]}, url={https://doi.org/10.1007/s12561-022-09338-6}, DOI={10.1007/s12561-022-09338-6}, journal={STATISTICS IN BIOSCIENCES}, author={Ting, Bryan and Wright, Fred and Zhou, Yi-Hui}, year={2022}, month={Feb} }
 @article{zhou_sun_2022, title={Improve the Colorectal Cancer Diagnosis Using Gut Microbiome Data}, volume={9}, ISSN={["2296-889X"]}, DOI={10.3389/fmolb.2022.921945}, journal={FRONTIERS IN MOLECULAR BIOSCIENCES}, author={Zhou, Yi-Hui and Sun, George}, year={2022}, month={Aug} }
 @article{sun_liu_rosen_huang_pace_dang_gallins_blue_ling_corvol_et al._2022, title={Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients}, volume={3}, ISSN={["2666-2477"]}, DOI={10.1016/j.xhgg.2022.100090}, number={2}, journal={HUMAN GENETICS AND GENOMICS ADVANCES}, author={Sun, Quan and Liu, Weifang and Rosen, Jonathan D. and Huang, Le and Pace, Rhonda G. and Dang, Hong and Gallins, Paul J. and Blue, Elizabeth E. and Ling, Hua and Corvol, Harriet and et al.}, year={2022}, month={Apr} }
 @article{sun_yang_rosen_jiang_chen_liu_wen_raffield_pace_zhou_et al._2022, title={MagicalRsq: Machine-learning-based genotype imputation quality calibration}, volume={109}, ISSN={["1537-6605"]}, DOI={10.1016/j.ajhg.2022.09.009}, number={11}, journal={AMERICAN JOURNAL OF HUMAN GENETICS}, author={Sun, Quan and Yang, Yingxi and Rosen, Jonathan D. and Jiang, Min-Zhi and Chen, Jiawen and Liu, Weifang and Wen, Jia and Raffield, Laura M. and Pace, Rhonda G. and Zhou, Yi-Hui and et al.}, year={2022}, month={Nov}, pages={1986–1997} }
 @article{aksit_ling_pace_raraigh_onchiri_faino_pagel_pugh_stilp_sun_et al._2022, title={Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis}, volume={109}, ISSN={["1537-6605"]}, DOI={10.1016/j.ajhg.2022.09.004}, number={10}, journal={AMERICAN JOURNAL OF HUMAN GENETICS}, author={Aksit, Melis A. and Ling, Hua and Pace, Rhonda G. and Raraigh, Karen S. and Onchiri, Frankline and Faino, Anna V. and Pagel, Kymberleigh and Pugh, Elizabeth and Stilp, Adrienne M. and Sun, Quan and et al.}, year={2022}, month={Oct}, pages={1894–1908} }
 @article{wang_zhou_2021, title={Eigenvector-based sparse canonical correlation analysis: Fast computation for estimation of multiple canonical vectors}, volume={185}, ISSN={["0047-259X"]}, url={https://doi.org/10.1016/j.jmva.2021.104781}, DOI={10.1016/j.jmva.2021.104781}, journal={JOURNAL OF MULTIVARIATE ANALYSIS}, publisher={Elsevier BV}, author={Wang, Wenjia and Zhou, Yi-Hui}, year={2021}, month={Sep} }
 @article{zhou_saghapour_2021, title={ImputEHR: A Visualization Tool of Imputation for the Prediction of Biomedical Data}, volume={12}, ISSN={["1664-8021"]}, DOI={10.3389/fgene.2021.691274}, journal={FRONTIERS IN GENETICS}, author={Zhou, Yi-Hui and Saghapour, Ehsan}, year={2021}, month={Jul} }
 @article{chen_jang_kaihatu_zhou_wright_chiu_rusyn_2021, title={Potential Human Health Hazard of Post-Hurricane Harvey Sediments in Galveston Bay and Houston Ship Channel: A Case Study of Using In Vitro Bioactivity Data to Inform Risk Management Decisions}, volume={18}, ISSN={["1660-4601"]}, url={https://doi.org/10.3390/ijerph182413378}, DOI={10.3390/ijerph182413378}, number={24}, journal={INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH}, author={Chen, Zunwei and Jang, Suji and Kaihatu, James M. and Zhou, Yi-Hui and Wright, Fred A. and Chiu, Weihsueh A. and Rusyn, Ivan}, year={2021}, month={Dec} }
 @article{luo_chen_blanchette_zhou_wright_baker_chiu_rusyn_2021, title={Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes}, volume={149}, ISSN={["1873-6351"]}, url={https://doi.org/10.1016/j.fct.2021.111979}, DOI={10.1016/j.fct.2021.111979}, journal={FOOD AND CHEMICAL TOXICOLOGY}, author={Luo, Yu-Syuan and Chen, Zunwei and Blanchette, Alexander D. and Zhou, Yi-Hui and Wright, Fred A. and Baker, Erin S. and Chiu, Weihsueh A. and Rusyn, Ivan}, year={2021}, month={Mar} }
 @misc{marvel_house_wheeler_song_zhou_wright_chiu_rusyn_motsinger-reif_reif_2021, title={The COVID-19 Pandemic Vulnerability Index (PVI) Dashboard: Monitoring County-Level Vulnerability Using Visualization, Statistical Modeling, and Machine Learning}, volume={129}, ISSN={["1552-9924"]}, DOI={10.1289/EHP8690}, number={1}, journal={ENVIRONMENTAL HEALTH PERSPECTIVES}, author={Marvel, Skylar W. and House, John S. and Wheeler, Matthew and Song, Kuncheng and Zhou, Yi-Hui and Wright, Fred A. and Chiu, Weihsueh A. and Rusyn, Ivan and Motsinger-Reif, Alison and Reif, David M.}, year={2021}, month={Jan} }
 @article{etheridge_gallins_jima_broadaway_ratain_schuetz_schadt_schroder_molony_zhou_et al._2020, title={A New Liver Expression Quantitative Trait Locus Map From 1,183 Individuals Provides Evidence for Novel Expression Quantitative Trait Loci of Drug Response, Metabolic, and Sex-Biased Phenotypes}, volume={107}, ISSN={["1532-6535"]}, DOI={10.1002/cpt.1751}, number={6}, journal={CLINICAL PHARMACOLOGY & THERAPEUTICS}, author={Etheridge, Amy S. and Gallins, Paul J. and Jima, Dereje and Broadaway, K. Alaine and Ratain, Mark J. and Schuetz, Erin and Schadt, Eric and Schroder, Adrian and Molony, Cliona and Zhou, Yihui and et al.}, year={2020}, month={Jun}, pages={1383–1393} }
 @article{gallins_saghapour_zhou_2020, title={Exploring the Limits of Combined Image/'omics Analysis for Non-cancer Histological Phenotypes}, volume={11}, ISSN={["1664-8021"]}, DOI={10.3389/fgene.2020.555886}, journal={FRONTIERS IN GENETICS}, author={Gallins, Paul and Saghapour, Ehsan and Zhou, Yi-Hui}, year={2020}, month={Oct} }
 @article{song_wright_zhou_2020, title={Systematic Comparisons for Composition Profiles, Taxonomic Levels, and Machine Learning Methods for Microbiome-Based Disease Prediction}, volume={7}, ISSN={["2296-889X"]}, DOI={10.3389/fmolb.2020.610845}, journal={FRONTIERS IN MOLECULAR BIOSCIENCES}, author={Song, Kuncheng and Wright, Fred A. and Zhou, Yi-Hui}, year={2020}, month={Dec} }
 @misc{zhou_gallins_2019, title={A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction}, volume={10}, ISSN={["1664-8021"]}, DOI={10.3389/fgene.2019.00579}, journal={FRONTIERS IN GENETICS}, author={Zhou, Yi-Hui and Gallins, Paul}, year={2019}, month={Jun} }
 @article{zhou_2019, title={A note on cyclic shift permutation testing for large eigenvalues}, volume={8}, url={https://doi.org/10.1002/sta4.257}, DOI={10.1002/sta4.257}, number={1}, journal={Stat}, publisher={Wiley}, author={Zhou, Yi‐Hui}, year={2019}, month={Jan} }
 @article{zhou_gallins_wright_2019, title={Marker-Trait Complete Analysis}, volume={11}, url={https://doi.org/10.1101/836494}, DOI={10.1101/836494}, publisher={Cold Spring Harbor Laboratory}, author={Zhou, Yi-Hui and Gallins, Paul and Wright, Fred}, year={2019}, month={Nov} }
 @article{zhou_2019, title={Set‐based differential covariance testing for genomics}, volume={8}, url={https://doi.org/10.1002/sta4.235}, DOI={10.1002/sta4.235}, number={1}, journal={Stat}, publisher={Wiley}, author={Zhou, Yi‐Hui}, year={2019}, month={Jan} }
 @article{frayling_beaumont_jones_yaghootkar_tuke_ruth_casanova_west_locke_sharp_et al._2018, title={A common allele in FGF21 associated with sugar intake is associated with body shape, lower total body-fat percentage, and higher blood pressure}, volume={23}, number={2}, journal={Cell reports}, author={Frayling, T. M. and Beaumont, R. N. and Jones, S. E. and Yaghootkar, H. and Tuke, M. A. and Ruth, K. S. and Casanova, F. and West, B. and Locke, J. and Sharp, S. and et al.}, year={2018}, pages={327–336} }
 @article{frayling_beaumont_jones_yaghootkar_tuke_ruth_casanova_west_locke_sharp_et al._2018, title={A common allele in FGF21 associated with sugar intake is associated with body shape, lower total body-fat percentage, and higher blood pressure}, volume={23}, number={2}, journal={Cell reports}, publisher={Elsevier}, author={Frayling, Timothy M and Beaumont, Robin N and Jones, Samuel E and Yaghootkar, Hanieh and Tuke, Marcus A and Ruth, Katherine S and Casanova, Francesco and West, Ben and Locke, Jonathan and Sharp, Seth and et al.}, year={2018}, pages={327–336} }
 @article{aoshima_shen_shen_yata_zhou_marron_2018, title={A survey of high dimension low sample size asymptotics}, volume={60}, ISSN={["1467-842X"]}, DOI={10.1111/anzs.12212}, number={1}, journal={AUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS}, author={Aoshima, Makoto and Shen, Dan and Shen, Haipeng and Yata, Kazuyoshi and Zhou, Yi-Hui and Marron, J. S.}, year={2018}, month={Mar}, pages={4–19} }
 @article{hu_gallins_zhou_2018, title={A zero-inflated beta-binomial model for microbiome data analysis}, volume={7}, ISSN={["2049-1573"]}, url={https://doi.org/10.1002/sta4.185}, DOI={10.1002/sta4.185}, number={1}, journal={STAT}, publisher={Wiley}, author={Hu, Tao and Gallins, Paul and Zhou, Yi-Hui}, year={2018} }
 @article{polineni_dang_gallins_jones_pace_stonebraker_commander_krenicky_zhou_corvol_et al._2018, title={Airway mucosal host defense is key to genomic regulation of cystic fibrosis lung disease severity}, volume={197}, number={1}, journal={American Journal of Respiratory and Critical Care Medicine}, author={Polineni, D. and Dang, H. and Gallins, P. J. and Jones, L. C. and Pace, R. G. and Stonebraker, J. R. and Commander, L. A. and Krenicky, J. E. and Zhou, Y. H. and Corvol, H. and et al.}, year={2018}, pages={79–93} }
 @article{polineni_dang_gallins_jones_pace_stonebraker_commander_krenicky_zhou_corvol_et al._2018, title={Airway mucosal host defense is key to genomic regulation of cystic fibrosis lung disease severity}, volume={197}, number={1}, journal={American journal of respiratory and critical care medicine}, publisher={American Thoracic Society}, author={Polineni, Deepika and Dang, Hong and Gallins, Paul J and Jones, Lisa C and Pace, Rhonda G and Stonebraker, Jaclyn R and Commander, Leah A and Krenicky, Jeanne E and Zhou, Yi-Hui and Corvol, Harriet and et al.}, year={2018}, pages={79–93} }
 @article{zhou_marron_wright_2018, title={Computation of ancestry scores with mixed families and unrelated individuals}, volume={74}, ISSN={["1541-0420"]}, url={https://doi.org/10.1111/biom.12708}, DOI={10.1111/biom.12708}, number={1}, journal={BIOMETRICS}, publisher={Wiley}, author={Zhou, Yi-Hui and Marron, James S. and Wright, Fred A.}, year={2018}, month={Mar}, pages={155–164} }
 @article{zhou_marron_wright_2018, title={Eigenvalue significance testing for genetic association}, volume={74}, url={https://doi.org/10.1111/biom.12767}, DOI={10.1111/biom.12767}, number={2}, journal={Biometrics}, publisher={Wiley}, author={Zhou, Yi-Hui and Marron, J. S. and Wright, Fred A.}, year={2018}, month={Jun}, pages={439–447} }
 @article{palowitch_shabalin_zhou_nobel_wright_2018, title={Estimation of cis-eQTL effect sizes using a log of linear model}, volume={74}, ISSN={["1541-0420"]}, url={https://doi.org/10.1111/biom.12810}, DOI={10.1111/biom.12810}, number={2}, journal={BIOMETRICS}, publisher={Wiley}, author={Palowitch, John and Shabalin, Andrey and Zhou, Yi-Hui and Nobel, Andrew B. and Wright, Fred A.}, year={2018}, month={Jun}, pages={616–625} }
 @article{house_grimm_jima_zhou_rusyn_wright_2017, title={A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics}, volume={8}, journal={Frontiers in genetics}, publisher={Frontiers}, author={House, John S and Grimm, Fabian A and Jima, Dereje D and Zhou, Yi-Hui and Rusyn, Ivan and Wright, Fred A}, year={2017}, pages={168} }
 @article{zhou_brooks_wang_2017, title={A Two-Stage Hidden Markov Model Design for Biomarker Detection, with Application to Microbiome Research}, volume={10}, ISSN={1867-1764 1867-1772}, url={http://dx.doi.org/10.1007/S12561-017-9187-Y}, DOI={10.1007/S12561-017-9187-Y}, number={1}, journal={Statistics in Biosciences}, publisher={Springer Science and Business Media LLC}, author={Zhou, Yi-Hui and Brooks, Paul and Wang, Xiaoshan}, year={2017}, month={Feb}, pages={41–58} }
 @article{rudra_zhou_wright_2017, title={A procedure to detect general association based on concentration of ranks}, volume={6}, number={1}, journal={Stat}, author={Rudra, Pratyaydipta and Zhou, Yihui and Wright, Fred A}, year={2017}, pages={88–101} }
 @article{brooks_buck_chen_diao_edwards_fettweis_huzurbazar_rakitin_satten_smirnova_et al._2017, title={Changes in vaginal community state types reflect major shifts in the microbiome}, volume={28}, number={1}, journal={Microbial ecology in health and disease}, publisher={Taylor & Francis}, author={Brooks, J Paul and Buck, Gregory A and Chen, Guanhua and Diao, Liyang and Edwards, David J and Fettweis, Jennifer M and Huzurbazar, Snehalata and Rakitin, Alexander and Satten, Glen A and Smirnova, Ekaterina and et al.}, year={2017}, pages={1303265} }
 @article{brooks_buck_chen_diao_edwards_fettweis_huzurbazar_rakitin_satten_smirnova_et al._2017, title={Changes in vaginal community state types reflect major shifts in the microbiome}, volume={28}, ISSN={1651-2235}, url={http://dx.doi.org/10.1080/16512235.2017.1303265}, DOI={10.1080/16512235.2017.1303265}, number={1}, journal={Microbial Ecology in Health and Disease}, publisher={Informa UK Limited}, author={Brooks, J. Paul and Buck, Gregory A. and Chen, Guanhua and Diao, Liyang and Edwards, David J. and Fettweis, Jennifer M. and Huzurbazar, Snehalata and Rakitin, Alexander and Satten, Glen A. and Smirnova, Ekaterina and et al.}, year={2017}, month={Jan}, pages={1303265} }
 @article{tan_li_shanmugam_piskol_kohler_young_liu_zhang_ramaswami_ariyoshi_et al._2017, title={Dynamic landscape and regulation of RNA editing in mammals}, volume={550}, ISSN={0028-0836 1476-4687}, url={http://dx.doi.org/10.1038/NATURE24041}, DOI={10.1038/NATURE24041}, number={7675}, journal={Nature}, publisher={Springer Science and Business Media LLC}, author={Tan, Meng How and Li, Qin and Shanmugam, Raghuvaran and Piskol, Robert and Kohler, Jennefer and Young, Amy N. and Liu, Kaiwen Ivy and Zhang, Rui and Ramaswami, Gokul and Ariyoshi, Kentaro and et al.}, year={2017}, month={Oct}, pages={249–254} }
 @article{zhou_cichocki_soldatow_scholl_gallins_jima_yoo_chiu_wright_rusyn_2017, title={Editor's Highlight: Comparative Dose-Response Analysis of Liver and Kidney Transcriptomic Effects of Trichloroethylene and Tetrachloroethylene in B6C3F1 Mouse}, volume={160}, ISSN={["1096-0929"]}, DOI={10.1093/toxsci/kfx165}, number={1}, journal={TOXICOLOGICAL SCIENCES}, publisher={Oxford University Press}, author={Zhou, Yi-Hui and Cichocki, Joseph A. and Soldatow, Valerie Y. and Scholl, Elizabeth H. and Gallins, Paul J. and Jima, Dereje and Yoo, Hong-Sik and Chiu, Weihsueh A. and Wright, Fred A. and Rusyn, Ivan}, year={2017}, month={Nov}, pages={95–110} }
 @article{aguet_brown_castel_davis_he_jo_mohammadi_park_parsana_segrè_et al._2017, title={Genetic effects on gene expression across human tissues}, volume={550}, ISSN={0028-0836 1476-4687}, url={http://dx.doi.org/10.1038/NATURE24277}, DOI={10.1038/NATURE24277}, number={7675}, journal={Nature}, publisher={Springer Science and Business Media LLC}, author={Aguet, François and Brown, Andrew A. and Castel, Stephane E. and Davis, Joe R. and He, Yuan and Jo, Brian and Mohammadi, Pejman and Park, YoSon and Parsana, Princy and Segrè, Ayellet V. and et al.}, editor={Battle, Alexis and Brown, Christopher D. and Engelhardt, Barbara E. and Montgomery, Stephen B.Editors}, year={2017}, month={Oct}, pages={204–213} }
 @article{li_kim_tsang_davis_damani_chiang_hess_zappala_strober_scott_et al._2017, title={The impact of rare variation on gene expression across tissues}, volume={550}, ISSN={0028-0836 1476-4687}, url={http://dx.doi.org/10.1038/NATURE24267}, DOI={10.1038/NATURE24267}, number={7675}, journal={Nature}, publisher={Springer Science and Business Media LLC}, author={Li, Xin and Kim, Yungil and Tsang, Emily K. and Davis, Joe R. and Damani, Farhan N. and Chiang, Colby and Hess, Gaelen T. and Zappala, Zachary and Strober, Benjamin J. and Scott, Alexandra J. and et al.}, year={2017}, month={Oct}, pages={239–243} }
 @article{palowitch_shabalin_zhou_nobel_wright_2016, title={Estimation of interpretable eQTL effect sizes using a log of linear model}, journal={arXiv preprint arXiv:1605.08799}, author={Palowitch, John and Shabalin, Andrey and Zhou, Yihui and Nobel, Andrew B and Wright, Fred A}, year={2016} }
 @article{luizon_eckalbar_wang_jones_smith_laurance_lin_gallins_etheridge_wright_et al._2016, title={Genomic characterization of metformin hepatic response}, volume={12}, number={11}, journal={PLoS genetics}, publisher={Public Library of Science}, author={Luizon, Marcelo R and Eckalbar, Walter L and Wang, Yao and Jones, Stacy L and Smith, Robin P and Laurance, Megan and Lin, Lawrence and Gallins, Paul J and Etheridge, Amy S and Wright, Fred and et al.}, year={2016}, pages={e1006449} }
 @article{tian_patel_ridpath_chen_zhou_neo_clement_takata_takeda_sale_et al._2016, title={Homologous recombination and translesion DNA synthesis play critical roles on tolerating DNA damage caused by trace levels of hexavalent chromium}, volume={11}, number={12}, journal={PLoS One}, author={Tian, X. and Patel, K. and Ridpath, J. R. and Chen, Y. J. and Zhou, Y. H. and Neo, D. and Clement, J. and Takata, M. and Takeda, S. and Sale, J. and et al.}, year={2016} }
 @article{tian_patel_ridpath_chen_zhou_neo_clement_takata_takeda_sale_et al._2016, title={Homologous recombination and translesion DNA synthesis play critical roles on tolerating DNA damage caused by trace levels of hexavalent chromium}, volume={11}, number={12}, journal={PloS one}, publisher={Public Library of Science}, author={Tian, Xu and Patel, Keyur and Ridpath, John R and Chen, Youjun and Zhou, Yi-Hui and Neo, Dayna and Clement, Jean and Takata, Minoru and Takeda, Shunichi and Sale, Julian and et al.}, year={2016}, pages={e0167503} }
 @article{zhou_2016, title={Pathway Analysis for RNA-Seq Data Using a Score-Based Approach}, volume={72}, ISSN={["1541-0420"]}, DOI={10.1111/biom.12372}, number={1}, journal={BIOMETRICS}, author={Zhou, Yi-Hui}, year={2016}, month={Mar}, pages={165–174} }
 @inproceedings{theisen_williams_2016, title={Poster: risk-based attack surface approximation}, booktitle={Symposium and Bootcamp on the Science of Security}, author={Theisen, C. and Williams, L.}, year={2016}, pages={121–123} }
 @article{zhou_wright_2016, title={The projack: a resampling approach to correct for ranking bias in high-throughput studies}, volume={17}, number={1}, journal={Biostatistics (Oxford, England)}, author={Zhou, Y. H. and Wright, F. A.}, year={2016}, pages={54–64} }
 @article{zhou_marron_2016, title={Visualization of robust L1PCA}, volume={5}, ISSN={2049-1573}, url={http://dx.doi.org/10.1002/STA4.113}, DOI={10.1002/STA4.113}, number={1}, journal={Stat}, publisher={Wiley}, author={Zhou, Yi-Hui and Marron, J. S.}, year={2016}, pages={173–184} }
 @article{rivas_pirinen_conrad_lek_tsang_karczewski_maller_kukurba_deluca_fromer_et al._2015, title={Effect of predicted protein-truncating genetic variants on the human transcriptome}, volume={348}, number={6235}, journal={Science}, publisher={American Association for the Advancement of Science}, author={Rivas, Manuel A and Pirinen, Matti and Conrad, Donald F and Lek, Monkol and Tsang, Emily K and Karczewski, Konrad J and Maller, Julian B and Kukurba, Kimberly R and DeLuca, David S and Fromer, Menachem and et al.}, year={2015}, pages={666–669} }
 @article{demerath_guan_grove_aslibekyan_mendelson_zhou_hedman_sandling_li_irvin_et al._2015, title={Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci}, volume={24}, number={15}, journal={Human Molecular Genetics}, author={Demerath, E. W. and Guan, W. H. and Grove, M. L. and Aslibekyan, S. and Mendelson, M. and Zhou, Y. H. and Hedman, A. K. and Sandling, J. K. and Li, L. A. and Irvin, M. R. and et al.}, year={2015}, pages={4464–4479} }
 @article{demerath_guan_grove_aslibekyan_mendelson_zhou_hedman_sandling_li_irvin_et al._2015, title={Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci}, volume={24}, number={15}, journal={Human molecular genetics}, publisher={Oxford University Press}, author={Demerath, Ellen W and Guan, Weihua and Grove, Megan L and Aslibekyan, Stella and Mendelson, Michael and Zhou, Yi-Hui and Hedman, Åsa K and Sandling, Johanna K and Li, Li-An and Irvin, Marguerite R and et al.}, year={2015}, pages={4464–4479} }
 @article{o’neal_gallins_pace_dang_wolf_jones_guo_zhou_madar_huang_et al._2015, title={Gene Expression in Transformed Lymphocytes Reveals Variation in Endomembrane and HLA Pathways Modifying Cystic Fibrosis Pulmonary Phenotypes}, volume={96}, ISSN={0002-9297}, url={http://dx.doi.org/10.1016/J.AJHG.2014.12.022}, DOI={10.1016/J.AJHG.2014.12.022}, number={2}, journal={The American Journal of Human Genetics}, publisher={Elsevier BV}, author={O’Neal, Wanda K. and Gallins, Paul and Pace, Rhonda G. and Dang, Hong and Wolf, Whitney E. and Jones, Lisa C. and Guo, XueLiang and Zhou, Yi-Hui and Madar, Vered and Huang, Jinyan and et al.}, year={2015}, month={Feb}, pages={318–328} }
 @article{o’neal_gallins_pace_dang_wolf_jones_guo_zhou_madar_huang_et al._2015, title={Gene expression in transformed lymphocytes reveals variation in endomembrane and HLA pathways modifying cystic fibrosis pulmonary phenotypes}, volume={96}, number={2}, journal={The American Journal of Human Genetics}, publisher={Cell Press}, author={O’Neal, Wanda K and Gallins, Paul and Pace, Rhonda G and Dang, Hong and Wolf, Whitney E and Jones, Lisa C and Guo, XueLiang and Zhou, Yi-Hui and Madar, Vered and Huang, Jinyan and et al.}, year={2015}, pages={318–328} }
 @article{corvol_blackman_boelle_gallins_pace_stonebraker_accurso_clement_collaco_dang_et al._2015, title={Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis}, volume={6}, journal={Nature Communications}, author={Corvol, H. and Blackman, S. M. and Boelle, P. Y. and Gallins, P. J. and Pace, R. G. and Stonebraker, J. R. and Accurso, F. J. and Clement, A. and Collaco, J. M. and Dang, H. and et al.}, year={2015} }
 @article{corvol_blackman_boëlle_gallins_pace_stonebraker_accurso_clement_collaco_dang_et al._2015, title={Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis}, volume={6}, journal={Nature communications}, publisher={Nature Publishing Group}, author={Corvol, Harriet and Blackman, Scott M and Boëlle, Pierre-Yves and Gallins, Paul J and Pace, Rhonda G and Stonebraker, Jaclyn R and Accurso, Frank J and Clement, Annick and Collaco, Joseph M and Dang, Hong and et al.}, year={2015}, pages={8382} }
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 @article{zhou_marron_2015, title={High dimension low sample size asymptotics of robust PCA}, volume={9}, ISSN={["1935-7524"]}, DOI={10.1214/15-ejs992}, number={1}, journal={ELECTRONIC JOURNAL OF STATISTICS}, author={Zhou, Yi-Hui and Marron, J. S.}, year={2015}, pages={204–218} }
 @article{zhou_marron_others_2015, title={High dimension low sample size asymptotics of robust PCA}, volume={9}, number={1}, journal={Electronic Journal of Statistics}, publisher={The Institute of Mathematical Statistics and the Bernoulli Society}, author={Zhou, Yi-Hui and Marron, JS and others}, year={2015}, pages={204–218} }
 @article{zhou_wright_2015, title={Hypothesis testing at the extremes: fast and robust association for high-throughput data}, volume={16}, ISSN={["1468-4357"]}, DOI={10.1093/biostatistics/kxv007}, number={3}, journal={BIOSTATISTICS}, publisher={Oxford University Press}, author={Zhou, Yi-Hui and Wright, Fred A.}, year={2015}, month={Jul}, pages={611–625} }
 @article{rager_tilley_tulenko_smeester_ray_yosim_currier_ishida_gonzález-horta_sánchez-ramírez_et al._2015, title={Identification of Novel Gene Targets and Putative Regulators of Arsenic-Associated DNA Methylation in Human Urothelial Cells and Bladder Cancer}, volume={28}, ISSN={0893-228X 1520-5010}, url={http://dx.doi.org/10.1021/TX500393Y}, DOI={10.1021/TX500393Y}, number={6}, journal={Chemical Research in Toxicology}, publisher={American Chemical Society (ACS)}, author={Rager, Julia E. and Tilley, Sloane K. and Tulenko, Samantha E. and Smeester, Lisa and Ray, Paul D. and Yosim, Andrew and Currier, Jenna M. and Ishida, María C. and González-Horta, Maria del Carmen and Sánchez-Ramírez, Blanca and et al.}, year={2015}, month={Jun}, pages={1144–1155} }
 @article{rager_tilley_tulenko_smeester_ray_yosim_currier_ishida_gonzalez-horta_sanchez-ramirez_et al._2015, title={Identification of novel gene targets and putative regulators of arsenic-associated DNA methylation in human urothelial cells and bladder cancer}, volume={28}, number={6}, journal={Chemical Research in Toxicology}, author={Rager, J. E. and Tilley, S. K. and Tulenko, S. E. and Smeester, L. and Ray, P. D. and Yosim, A. and Currier, J. M. and Ishida, M. C. and Gonzalez-Horta, M. D. and Sanchez-Ramirez, B. and et al.}, year={2015}, pages={1144–1155} }
 @article{identification of novel gene targets and putative regulators of arsenic-associated dna methylation in human urothelial cells and bladder cancer_2015, volume={28}, number={6}, journal={Chemical research in toxicology}, publisher={American Chemical Society}, year={2015}, pages={1144–1155} }
 @article{metabolomic evaluation of neutrophilic airway inflammation in cystic fibrosis_2015, volume={148}, number={2}, journal={Chest}, publisher={Elsevier}, year={2015}, pages={507–515} }
 @article{zhou_2015, title={PathwaySeq: Pathway analysis for RNA-Seq data using a score-based approach}, volume={1}, number={1000}, journal={dim (data. test)}, author={Zhou, Yihui}, year={2015}, pages={448} }
 @article{abdo_xia_brown_kosyk_huang_sakamuru_zhou_jack_gallins_xia_et al._2015, title={Population-Based in Vitro Hazard and Concentration-Response Assessment of Chemicals: The 1000 Genomes High-Throughput Screening Study}, volume={123}, ISSN={["1552-9924"]}, DOI={10.1289/ehp.1408775}, number={5}, journal={ENVIRONMENTAL HEALTH PERSPECTIVES}, author={Abdo, Nour and Xia, Menghang and Brown, Chad C. and Kosyk, Oksana and Huang, Ruili and Sakamuru, Srilatha and Zhou, Yi-Hui and Jack, John R. and Gallins, Paul and Xia, Kai and et al.}, year={2015}, month={May}, pages={458–466} }
 @article{abdo_xia_brown_kosyk_huang_sakamuru_zhou_jack_gallins_xia_et al._2015, title={Population-based in vitro hazard and concentration--response assessment of chemicals: the 1000 genomes high-throughput screening study}, volume={123}, number={5}, journal={Environmental health perspectives}, publisher={National Institute of Environmental Health Science}, author={Abdo, Nour and Xia, Menghang and Brown, Chad C and Kosyk, Oksana and Huang, Ruili and Sakamuru, Srilatha and Zhou, Yi-Hui and Jack, John R and Gallins, Paul and Xia, Kai and et al.}, year={2015}, pages={458} }
 @article{ardlie_deluca_segre_sullivan_young_gelfand_trowbridge_maller_tukiainen_lek_et al._2015, title={The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans}, volume={348}, number={6235}, journal={Science}, author={Ardlie, K. G. and DeLuca, D. S. and Segre, A. V. and Sullivan, T. J. and Young, T. R. and Gelfand, E. T. and Trowbridge, C. A. and Maller, J. B. and Tukiainen, T. and Lek, M. and et al.}, year={2015}, pages={648–660} }
 @article{zhou_wright_2015, title={The projack: a resampling approach to correct for ranking bias in high-throughput studies}, volume={17}, number={1}, journal={Biostatistics}, publisher={Oxford University Press}, author={Zhou, Yi-Hui and Wright, Fred A}, year={2015}, pages={54–64} }
 @article{sanders_smeester_rojas_debussycher_wu_wright_zhou_laine_rager_swamy_et al._2014, title={Cadmium exposure and the epigenome: Exposure-associated patterns of DNA methylation in leukocytes from mother-baby pairs}, volume={9}, number={2}, journal={Epigenetics}, publisher={Taylor & Francis}, author={Sanders, Alison and Smeester, Lisa and Rojas, Daniel and DeBussycher, Tristan and Wu, Michael and Wright, Fred and Zhou, Yi-Hui and Laine, Jessica and Rager, Julia and Swamy, Geeta and et al.}, year={2014}, pages={212–221} }
 @article{wright_sullivan_brooks_zou_sun_xia_madar_jansen_chung_zhou_et al._2014, title={Heritability and genomics of gene expression in peripheral blood}, volume={46}, number={5}, journal={Nature Genetics}, author={Wright, F. A. and Sullivan, P. F. and Brooks, A. I. and Zou, F. and Sun, W. and Xia, K. and Madar, V. and Jansen, R. and Chung, W. I. and Zhou, Y. H. and et al.}, year={2014}, pages={430–437} }
 @article{wright_sullivan_brooks_zou_sun_xia_madar_jansen_chung_zhou_et al._2014, title={Heritability and genomics of gene expression in peripheral blood}, volume={46}, number={5}, journal={Nature genetics}, publisher={Nature Publishing Group}, author={Wright, Fred A and Sullivan, Patrick F and Brooks, Andrew I and Zou, Fei and Sun, Wei and Xia, Kai and Madar, Vered and Jansen, Rick and Chung, Wonil and Zhou, Yi-Hui and et al.}, year={2014}, pages={430} }
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 @article{chiu_campbell_clewell_zhou_wright_guyton_rusyn_2014, title={Physiologically Based Pharmacokinetic (PBPK) Modeling of Interstrain Variability in Trichloroethylene Metabolism in the Mouse}, volume={122}, ISSN={["1552-9924"]}, DOI={10.1289/ehp.1307623}, number={5}, journal={ENVIRONMENTAL HEALTH PERSPECTIVES}, author={Chiu, Weihsueh A. and Campbell, Jerry L., Jr. and Clewell, Harvey J., III and Zhou, Yi-Hui and Wright, Fred A. and Guyton, Kathryn Z. and Rusyn, Ivan}, year={2014}, month={May}, pages={456–463} }
 @article{physiologically based pharmacokinetic (pbpk) modeling of interstrain variability in trichloroethylene metabolism in the mouse_2014, volume={122}, number={5}, journal={Environmental health perspectives}, publisher={National Institute of Environmental Health Science}, year={2014}, pages={456} }
 @article{zhou_dang_2014, title={RNA-Seq pathway analysis}, author={Zhou, Yi-Hui and Dang, Hong}, year={2014} }
 @article{zhou_barry_wright_2013, title={Empirical pathway analysis, without permutation}, number={doi:10.1093/biostatistics/kxt004}, journal={Biostatistics}, author={Zhou, Yi-Hui and Barry, William T. and Wright, Fred A.}, year={2013}, pages={1–13} }
 @inbook{esther_zhou_wright_boucher_2013, title={Metabolomic Evaluation Of Cystic Fibrosis Airways Disease}, booktitle={A26. PEDIATRIC CYSTIC FIBROSIS}, publisher={American Thoracic Society}, author={Esther, Charles R and Zhou, Yihui and Wright, Fred and Boucher, Richard C}, year={2013}, pages={A1165–A1165} }
 @article{li_chen_liu_zhou_2013, title={Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data}, volume={5}, ISSN={1867-1764 1867-1772}, url={http://dx.doi.org/10.1007/S12561-012-9067-4}, DOI={10.1007/S12561-012-9067-4}, number={1}, journal={Statistics in Biosciences}, publisher={Springer Science and Business Media LLC}, author={Li, Yun and Chen, Wei and Liu, Eric Yi and Zhou, Yi-Hui}, year={2013}, month={May}, pages={3–25} }
 @article{sun_oey_zhou_2013, title={Skill-assessments of statistical and Ensemble Kalman Filter data assimilative analyses using surface and deep observations in the Gulf of Mexico}, volume={7}, ISSN={2095-0195 2095-0209}, url={http://dx.doi.org/10.1007/S11707-013-0377-8}, DOI={10.1007/S11707-013-0377-8}, number={3}, journal={Frontiers of Earth Science}, publisher={Springer Science and Business Media LLC}, author={Sun, Zhibin and Oey, Lie-Yauw and Zhou, Yi-Hui}, year={2013}, month={Jul}, pages={271–281} }
 @article{zhou_mayhew_sun_xu_zou_wright_2013, title={Space-time clustering and the permutation moments of quadratic forms}, volume={2}, ISSN={2049-1573}, url={http://dx.doi.org/10.1002/STA4.37}, DOI={10.1002/STA4.37}, number={1}, journal={Stat}, publisher={Wiley}, author={Zhou, Yi-Hui and Mayhew, Gregory and Sun, Zhibin and Xu, Xiaolin and Zou, Fei and Wright, Fred A.}, year={2013}, month={Nov}, pages={292–302} }
 @article{xu_xu_zhou_2013, title={Stochastic comparisons in a price-quantity setting firm with uncertain demand and emergency procurement}, volume={22}, number={4}, journal={Journal of systems science and systems engineering}, publisher={Springer Berlin Heidelberg}, author={Xu, Minghui and Xu, Xiaolin and Zhou, Yi-hui}, year={2013}, pages={401–420} }
 @article{xu_xu_zhou_2013, title={Stochastic comparisons in a price-quantity setting firm with uncertain demand and emergency procurement}, volume={22}, ISSN={1004-3756 1861-9576}, url={http://dx.doi.org/10.1007/S11518-013-5226-5}, DOI={10.1007/S11518-013-5226-5}, number={4}, journal={Journal of Systems Science and Systems Engineering}, publisher={Springer Science and Business Media LLC}, author={Xu, Minghui and Xu, Xiaolin and Zhou, Yi-hui}, year={2013}, month={Oct}, pages={401–420} }
 @article{lock_abdo_huang_xia_kosyk_o’shea_zhou_sedykh_tropsha_austin_et al._2012, title={Quantitative high-throughput screening for chemical toxicity in a population-based in vitro model}, journal={Toxicological Sciences}, publisher={Soc Toxicology}, author={Lock, Eric F and Abdo, Nour and Huang, Ruili and Xia, Menghang and Kosyk, Oksana and O’Shea, Shannon H and Zhou, Yi-Hui and Sedykh, Alexander and Tropsha, Alexander and Austin, Christopher P and et al.}, year={2012} }
 @article{zhou_wright_2012, title={Simple and accurate trend tests using a permutation approximation}, publisher={bepress}, author={Zhou, Yi-Hui and Wright, Fred A}, year={2012} }
 @article{li_chen_liu_zhou_2012, title={Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data}, journal={Statistics in Biosciences}, publisher={Springer}, author={Li, Yun and Chen, Wei and Liu, Eric Yi and Zhou, Yi-Hui}, year={2012}, pages={1–23} }
 @article{zhou_barry_wright_hill_2012, title={Supplementary material for: Empirical Pathway Analysis, Without Permutation}, author={Zhou, Yi-Hui and Barry, William T and Wright, Fred A and Hill, Chapel}, year={2012} }
 @article{zhou_xia_wright_2011, title={A powerful and flexible approach to the analysis of RNA sequence count data}, volume={27}, number={19}, journal={Bioinformatics}, publisher={Oxford University Press}, author={Zhou, Yi-Hui and Xia, Kai and Wright, Fred A}, year={2011}, pages={2672–2678} }
 @article{xia_shabalin_huang_madar_zhou_wang_zou_sun_sullivan_wright_2011, title={seeQTL: a searchable database for human eQTLs}, volume={28}, number={3}, journal={Bioinformatics}, publisher={Oxford University Press}, author={Xia, Kai and Shabalin, Andrey A and Huang, Shunping and Madar, Vered and Zhou, Yi-Hui and Wang, Wei and Zou, Fei and Sun, Wei and Sullivan, Patrick F and Wright, Fred A}, year={2011}, pages={451–452} }
 @article{zhou_gowda_2009, title={On the finiteness of the cone spectrum of certain linear transformations on Euclidean Jordan algebras}, volume={431}, ISSN={0024-3795}, url={http://dx.doi.org/10.1016/j.laa.2009.03.031}, DOI={10.1016/j.laa.2009.03.031}, number={5-7}, journal={Linear Algebra and its Applications}, publisher={Elsevier BV}, author={Zhou, Yihui and Gowda, M. Seetharama}, year={2009}, month={Aug}, pages={772–782} }
 @article{medical center, new york, ny 10032, usa. 18wellcome trust centre for human genetics research, nuffield department of clinical medicine, university of oxford, oxford ox3 7bn, uk. 19department of computer science, stanford university, stanford, ca 94305, usa. 20department of computer science, johns }
 @article{yin_zhou_asplund_athanassiadis_wideqvist_qiu_zhu_zhao_bergman, title={Significant Chlorinated Paraffin Concentrations Together with Traditional and Emerging Pollutants in Wildlife from a Yangtze River Delta Area Site}, author={Yin, Ge and Zhou, Yihui and Asplund, Lillemor and Athanassiadis, Ioannis and Wideqvist, Ulla and Qiu, Yanling and Zhu, Zhiliang and Zhao, Jianfu and Bergman, Åke} }
 @article{supplemental material physiologically based pharmacokinetic (pbpk) modeling of interstrain variability in trichloroethylene metabolism in the mouse }
 @article{zhou_wright, title={Supplementary Appendix to: Hypothesis testing at the extremes: fast and robust association for high-throughput data}, author={Zhou, Yi-Hui and Wright, Fred A} }
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