Works Published in 2019

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Displaying all 20 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2019 journal article

Microfluidic Technologies for High Throughput Screening Through Sorting and On-Chip Culture of C. elegans

Molecules.

By: D. Midkiff n & A. Miguel n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Caenorhabditis elegans / genetics; Cell Movement / genetics; High-Throughput Screening Assays; Lab-On-A-Chip Devices; Oligonucleotide Array Sequence Analysis / methods; Protein Transport / genetics
Source: ORCID
Added: May 31, 2023

2019 journal article

Automated Imaging, Tracking, and Analytics Pipeline for Differentiating Environmental Effects on Root Meristematic Cell Division

Frontiers in Plant Science, 10.

By: E. Buckner n, I. Madison n, H. Chou n, A. Matthiadis n, C. Melvin n, R. Sozzani n, C. Williams n, T. Long n

co-author countries: United States of America 🇺🇸
author keywords: light sheet imaging; image analysis; cell cycle progression; heat stress and iron deficiency stresses; combined stresses
Sources: Crossref, ORCID
Added: September 14, 2020

2019 article

DERIVATION OF HUMAN TROPHOBLAST STEM CELLS FROM HUMAN PLURIPOTENT STEM CELLS

Mischler, A., Karakis, V., San Miguel, A., & Rao, B. (2019, August). PLACENTA, Vol. 83, pp. E59–E59.

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: April 20, 2020

2019 journal article

Oxygen and hydrogen isotopes in human hair and tap water: Modeling relationships in a modern Mexican population

Human Biology, 90(3), 197–211.

By: C. Juarez, R. Ramey, D. Flaherty & B. Akpa*

Contributors: C. Juarez, R. Ramey, D. Flaherty & B. Akpa*

author keywords: delta H-2; delta O-18; MEXICO; TAP WATER; HAIR
Source: ORCID
Added: April 7, 2020

2019 article

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks

PLANT JOURNAL.

By: R. Spurney n, L. Broeck n, N. Clark n, A. Fisher n, M. Luis Balaguer n & R. Sozzani n

co-author countries: United States of America 🇺🇸
author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
Source: ORCID
Added: January 13, 2020

2019 journal article

Discovery and Evaluation of Peptide Ligands for Selective Adsorption and Release of Cas9 Nuclease on Solid Substrates

BIOCONJUGATE CHEMISTRY, 30(12), 3057–3068.

By: K. Day n, R. Prodromou n, S. Bosari n, A. Lavoie n, M. Omary n, C. Market n, A. San Miguel n, S. Menegatti n

co-author countries: United States of America 🇺🇸
MeSH headings : Adsorption; Amino Acid Sequence; Binding Sites; CRISPR-Associated Protein 9 / isolation & purification; CRISPR-Associated Protein 9 / metabolism; Drug Discovery; Ligands; Molecular Docking Simulation; Peptide Library; Peptides / metabolism; Resins, Synthetic / chemistry; Substrate Specificity
Sources: Web Of Science, ORCID
Added: January 13, 2020

2019 journal article

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks

NATURE COMMUNICATIONS, 10.

By: N. Clark n, E. Buckner n, A. Fisher n, E. Nelson n, T. Nguyen n, A. Simmons*, M. Balaguer n, T. Butler-Smith n ...

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Asymmetric Cell Division / genetics; Asymmetric Cell Division / physiology; Cell Differentiation; Cell Division; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Stem Cells / cytology; Stem Cells / metabolism; Transcription Factors / metabolism; Transcriptome; Ubiquitination / genetics; Ubiquitins / genetics
Sources: Web Of Science, ORCID
Added: December 30, 2019

2019 journal article

Molecular Dynamics Simulations of Kir2.2 and Cholesterol Reveal State- and Concentration-Dependent Binding Sites

Biophysical Journal, 116(3), 41a.

By: N. Barbera*, M. Ayee*, B. Akpa n & I. Levitan

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID
Added: December 16, 2019

2019 journal article

One thousand plant transcriptomes and the phylogenomics of green plants

NATURE, 574(7780), 679-+.

By: J. Leebens-Mack, M. Barker, E. Carpenter, M. Deyholos, M. Gitzendanner, S. Graham, I. Grosse, Z. Li ...

Contributors: J. Leebens-Mack, M. Barker, E. Carpenter, M. Deyholos, M. Gitzendanner, S. Graham, I. Grosse, Z. Li ...

Sources: Web Of Science, ORCID
Added: November 18, 2019

2019 journal article

Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development

Plant Biotechnology Journal, 18(4), 929–943.

By: J. Vallarino*, C. Merchante*, J. Sánchez‐Sevilla*, M. Luis Balaguer n, D. Pott*, M. Ariza*, A. Casañal*, D. Posé* ...

co-author countries: Germany 🇩🇪 Spain 🇪🇸 United States of America 🇺🇸
MeSH headings : Bayes Theorem; Fragaria / genetics; Fragaria / growth & development; Fruit / growth & development; Gene Expression Regulation, Plant; Gene Silencing; MADS Domain Proteins / genetics; Metabolome; Plant Proteins / genetics; Plants, Genetically Modified
Sources: Web Of Science, ORCID, Crossref
Added: November 11, 2019

2019 journal article

Relating nitrogen concentration and light intensity to the growth and lipid accumulation of Dunaliella viridis in a photobioreactor

Journal of Applied Phycology, 31(6), 3397–3409.

By: Y. Lai n, A. Karam n, H. Sederoff n, J. Ducoste n & . Reyes n

co-author countries: United States of America 🇺🇸

Contributors: Y. Lai n, A. Karam n, H. Sederoff n, J. Ducoste n & F. Reyes n

author keywords: Dunaliella viridis; Chlorophyta; Lipid; Light; Nitrogen; Photobioreactor
Source: ORCID
Added: October 30, 2019

2019 journal article

Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana

MOLECULAR CELL, 76(1), 177-+.

co-author countries: Korea (Republic of) 🇰🇷 United States of America 🇺🇸
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Nucleus / metabolism; Cytoplasm / metabolism; Gene Expression Regulation, Plant; Indoleacetic Acids / pharmacology; Intrinsically Disordered Proteins / chemistry; Intrinsically Disordered Proteins / genetics; Intrinsically Disordered Proteins / metabolism; Plant Growth Regulators / pharmacology; Protein Binding; Protein Folding; Protein Interaction Domains and Motifs; Structure-Activity Relationship; Transcription Factors / chemistry; Transcription Factors / genetics; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: October 21, 2019

2019 journal article

Modular one-pot assembly of CRISPR arrays enables library generation and reveals factors influencing crRNA biogenesis

NATURE COMMUNICATIONS, 10.

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
MeSH headings : Base Sequence; CRISPR-Associated Proteins / metabolism; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; DNA / genetics; Endonucleases / metabolism; Gene Library; Genetic Techniques; HEK293 Cells; Humans; Nucleic Acid Conformation; Plasmids / metabolism; RNA / biosynthesis; RNA, Messenger / genetics; RNA, Messenger / metabolism; Saccharomyces cerevisiae / metabolism
Source: Web Of Science
Added: July 22, 2019

2019 journal article

Driving the Scalability of DNA-Based Information Storage Systems

ACS SYNTHETIC BIOLOGY, 8(6), 1241–1248.

By: K. Tomek n, K. Volkel n, A. Simpson n, A. Hass n, E. Indermaur n, J. Tuck n, A. Keung n

co-author countries: United States of America 🇺🇸
author keywords: synthetic biology; DNA storage; information storage; nested architecture; file access; DNA sequencing
MeSH headings : DNA / chemistry; DNA / genetics; Databases, Nucleic Acid; High-Throughput Nucleotide Sequencing; Information Storage and Retrieval / methods; Sequence Analysis, DNA / methods; Synthetic Biology / methods
Source: Web Of Science
Added: July 15, 2019

2019 journal article

Affordable Microfluidic Bead-Sorting Platform for Automated Selection of Porous Particles Functionalized with Bioactive Compounds

SCIENTIFIC REPORTS, 9(1).

By: S. Saberi-Bosari n, M. Omary n, A. Lavoie n, R. Prodromou n, K. Day n, S. Menegatti n, A. San-Miguel n

co-author countries: United States of America 🇺🇸
MeSH headings : Combinatorial Chemistry Techniques / instrumentation; Humans; Image Processing, Computer-Assisted; Immunoglobulin G / chemistry; Lab-On-A-Chip Devices; Microfluidic Analytical Techniques / instrumentation; Peptide Library; Porosity; Proof of Concept Study; Unsupervised Machine Learning
Sources: Web Of Science, ORCID
Added: May 28, 2019

2019 journal article

The Lateral Root Cap Acts as an Auxin Sink that Controls Meristem Size

CURRENT BIOLOGY, 29(7), 1199-+.

By: R. Di Mambro*, N. Svolacchia, R. Dello Ioio, E. Pierdonati, E. Salvi, E. Pedrazzini*, A. Vitale*, S. Perilli ...

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
MeSH headings : Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytokinins / genetics; Cytokinins / metabolism; Indoleacetic Acids / metabolism; Meristem / growth & development; Meristem / metabolism; Plant Roots / growth & development; Plant Roots / metabolism
Sources: Web Of Science, ORCID
Added: April 15, 2019

2019 journal article

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW

CURRENT BIOLOGY, 29(3), 520-+.

By: W. Smet*, I. Sevilem*, M. Luis Balaguer n, B. Wybouw*, E. Mor*, S. Miyashima*, B. Blob*, P. Roszak* ...

co-author countries: Belgium 🇧🇪 Finland 🇫🇮 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Japan 🇯🇵 Netherlands 🇳🇱 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Basic Helix-Loop-Helix Transcription Factors / genetics; Basic Helix-Loop-Helix Transcription Factors / metabolism; Cambium / physiology; Cell Proliferation / genetics; Cytokinins / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Trans-Activators / genetics; Trans-Activators / metabolism; Transcription Factors, General / genetics; Transcription Factors, General / metabolism; Xylem / physiology
Sources: Web Of Science, ORCID
Added: February 18, 2019

2019 journal article

Mobile PEAR transcription factors integrate hormone and miRNA cues to prime cambial growth

Nature, 565(7740), 490–494.

co-author countries: Belgium 🇧🇪 Germany 🇩🇪 Finland 🇫🇮 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Japan 🇯🇵 Netherlands 🇳🇱 Sweden 🇸🇪 United States of America 🇺🇸
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / biosynthesis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cambium / cytology; Cambium / genetics; Cambium / growth & development; Cambium / metabolism; Cell Division / genetics; Cues; Cytokinins / metabolism; Gene Expression Regulation, Plant; Indoleacetic Acids / metabolism; MicroRNAs / genetics; MicroRNAs / metabolism; Phloem / cytology; Phloem / metabolism; Plant Growth Regulators / metabolism; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Signal Transduction; Transcription Factors / biosynthesis; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: February 8, 2019

2019 journal article

Computational prediction of gene regulatory networks in plant growth and development

Current Opinion in Plant Biology, 47, 96–105.

By: S. Haque n, J. Ahmad n, N. Clark n, C. Williams n & R. Sozzani n

co-author countries: United States of America 🇺🇸
MeSH headings : Computational Biology / methods; Gene Regulatory Networks; Models, Genetic; Plant Development / genetics; Reproducibility of Results
Sources: Web Of Science, ORCID
Added: February 8, 2019

2019 journal article

Engineering Epigenetic Regulation Using Synthetic Read-Write Modules

CELL, 176(1-2), 227-+.

By: M. Park*, N. Patel*, A. Keung n & A. Khalil*

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: January 28, 2019