Works (5)

Updated: March 5th, 2026 13:37

2026 article

Synthetic promoter design in plants: integration of computational and experimental approaches

Yaschenko, A. E., Alonso, J. M., & Stepanova, A. N. (2026, February 13). Frontiers in Plant Science.

By: A. Yaschenko n, J. Alonso n & A. Stepanova n

topics (OpenAlex): Plant Molecular Biology Research; Genomics and Chromatin Dynamics; Plant Gene Expression Analysis
Source: NC State University Libraries
Added: March 4, 2026

2025 article

EBSn , a Robust Synthetic Reporter for Monitoring Ethylene Responses in Plants

Fernandez‐Moreno, J. P., Fenech, M., Yaschenko, A. E., Zhao, C., Neubauer, M., Davis, H. N., … Stepanova, A. N. (2025, September 21). Plant Biotechnology Journal, Vol. 9.

author keywords: Arabidopsis; EBSn; EIN3-binding site; ethylene reporter; hormone detection; plants; synthetic promoter; tomato
topics (OpenAlex): Postharvest Quality and Shelf Life Management; Plant Molecular Biology Research; Plant Physiology and Cultivation Studies
Sources: Web Of Science, NC State University Libraries
Added: September 29, 2025

2024 journal article

A rapid and scalable approach to build synthetic repetitive hormone‐responsive promoters

Plant Biotechnology Journal, 22(7), 1942–1956.

author keywords: repetitive DNA sequence; GoldenBraid; cis-element; sequence stuffer; hormone-responsive promoter; ethylene reporter
MeSH headings : Promoter Regions, Genetic / genetics; Plant Growth Regulators / metabolism; Synthetic Biology / methods; Plants, Genetically Modified / genetics; Cloning, Molecular / methods; Gene Expression Regulation, Plant
topics (OpenAlex): CRISPR and Genetic Engineering; RNA Research and Splicing; Protein Degradation and Inhibitors
TL;DR: Analysis of transgenic lines carrying the synthetic ethylene-responsive promoter 10x2EBS-S10 fused to the GUS reporter gene uncovered several developmentally regulated ethylene response maxima, indicating the utility of this reporter for monitoring the involvement of ethylene in a variety of physiologically relevant processes. (via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: February 22, 2024

2024 journal article

Arabidopsis as a model for translational research

The Plant Cell, 2.

By: A. Yaschenko n, J. Alonso n & A. Stepanova n

topics (OpenAlex): Plant tissue culture and regeneration; Plant Genetic and Mutation Studies; Plant Molecular Biology Research
TL;DR: It is envisioned that the power of Arabidopsis-inspired biotechnologies and foundational discoveries will continue to fuel the development of resilient, high-yielding, nutritious plants for the betterment of plant and animal health and greater environmental sustainability. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: March 1, 2024

2022 journal article

Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?

Current Opinion in Plant Biology, 68, 102241.

By: A. Yaschenko n, M. Fenech n, S. Mazzoni-Putman n, J. Alonso n & A. Stepanova n

author keywords: Tissue specificity; Gene expression; Synthetic biology; Transcription; factor; Epigenetics; Single cell; Transcriptomics; Logic gate; Promoter; Cis-regulatory element
MeSH headings : Computational Biology; Gene Expression; Gene Regulatory Networks / genetics; Plants / genetics; Plants / metabolism; Promoter Regions, Genetic / genetics; Synthetic Biology; Transcription Factors / metabolism
topics (OpenAlex): Plant Molecular Biology Research; CRISPR and Genetic Engineering; Genomics and Chromatin Dynamics
TL;DR: Synthetic biology shows great promise not only as a means of testing candidate DNA motifs but also for establishing the general rules of nature driving promoter architecture and for the rational design of genetic circuits in research and agriculture to confer tissue-specific expression to genes or molecular pathways of interest. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: June 12, 2022

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