Zhe Lyu

Erratum for Nachman et al., “Increased fungal burden in the gastrointestinal tract of brain-dead organ donors”

Nachman, E. J., Ardis, C. K., Ardis, A. K. B., Nieto, J., Bresson, M. M., Robertson, C. M., … Britton, R. A. (2025, November 25). Erratum for Nachman et al., “Increased fungal burden in the gastrointestinal tract of brain-dead organ donors.” Microbiology Spectrum.

Increased fungal burden in the gastrointestinal tract of brain-dead organ donors

Nachman, E. J., Ardis, C. K., Ardis, A. K. B., Nieto, J., Bresson, M. M., Robertson, C. M., … Britton, R. A. (2025, June 18). (J. B. Konopka, Ed.). Microbiology Spectrum.

Editorial: Cross-boundary significance of methanogens - the methane moment and beyond

Lyu, Z., Rotaru, A.-E., Pimentel, M., Zhang, C.-J., Rittmann, S. K.-M. R., & Ferry, J. G. (2024, June 24). Frontiers in Microbiology, Vol. 15.

Exploring the link between COVID-19 and gut microbiome at the community level

Li, B., Terwilliger, A., Maresso, A., Britton, R., Yousefipour, Z., Donnachie, E., & Lyu, Z. (2024, October 1). American Journal of Clinical Pathology, Vol. 162, pp. S128–S129.

Editorial: The methane moment - Cross-boundary significance of methanogens: Preface

Lyu, Z., Rotaru, A.-E., Pimentel, M., Zhang, C.-J., & Rittmann, S. K.-M. R. (2022, November 14). Frontiers in Microbiology, Vol. 13.

Back to the Source: Molecular Identification of Methanogenic Archaea as Markers of Colonic Methane Production

Lyu, Z. (2021, January 19). Digestive Diseases and Sciences, Vol. 66, pp. 3661–3664.

Tuning Gene Expression by Phosphate in the Methanogenic Archaeon Methanococcus maripaludis

Akinyemi, T. S., Shao, N., Lyu, Z., Drake, I. J., Liu, Y., & Whitman, W. B. (2021, October 19). ACS Synthetic Biology, Vol. 10, pp. 3028–3039.

Data-Driven Models Reveal Mutant Cell Behaviors Important for Myxobacterial Aggregation

Zhang, Z., Cotter, C. R., Lyu, Z., Shimkets, L. J., & Igoshin, O. A. (2020, July 13). (M. Rust, Ed.). MSystems, Vol. 5.

Data-driven models reveal mutant cell behaviors important for myxobacterial aggregation

Zhang, Z., Cotter, C. R., Lyu, Z., Shimkets, L. J., & Igoshin, O. A. (2020, February 10). [], Vol. 2.

Diversity and Taxonomy of Methanogens

Lyu, Z., & Liu, Y. (2019, January 1). Biogenesis of Hydrocarbons, pp. 19–77.

Posttranslational Methylation of Arginine in Methyl Coenzyme M Reductase Has a Profound Impact on both Methanogenesis and Growth of Methanococcus maripaludis

Lyu, Z., Shao, N., Chou, C.-W., Shi, H., Patel, R., Duin, E. C., & Whitman, W. B. (2019, November 14). (A. Becker, Ed.). Journal of Bacteriology, Vol. 202.

The Nbp35/ApbC homolog acts as a nonessential [4Fe‐4S] transfer protein in methanogenic archaea

Zhao, C., Lyu, Z., Long, F., Akinyemi, T., Manakongtreecheep, K., Söll, D., … Liu, Y. (2019, November 11). FEBS Letters, Vol. 594, pp. 924–932.

Transplanting the pathway engineering toolbox to methanogens

Lyu, Z., & Whitman, W. B. (2019, March 12). Current Opinion in Biotechnology, Vol. 59, pp. 46–54.

Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis

Lyu, Z., Chou, C.-W., Shi, H., Wang, L., Ghebreab, R., Phillips, D., … Whitman, W. B. (2018, January 11). (W. W. Metcalf, Ed.). Journal of Bacteriology, Vol. 200.

Diversity and Taxonomy of Methanogens

Lyu, Z., & Liu, Y. (2018, January 1). Biogenesis of Hydrocarbons, pp. 1–59.

Methanogenesis

Lyu, Z., Shao, N., Akinyemi, T., & Whitman, W. B. (2018, July 1). Current Biology, Vol. 28, pp. R727–R732.

An Important Role for Purifying Selection in Archaeal Genome Evolution

Lyu, Z., Li, Z.-G., He, F., & Zhang, Z. (2017, October 25). (M. Rust, Ed.). MSystems, Vol. 2, pp. e00112–17.

Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments

Lyu, Z., & Lu, Y. (2017, November 14). The ISME Journal.

Mmp10 is required for post-translational methylation of arginine at the active site of methyl-coenzyme M reductase

Lyu, Z., Chou, C.-wen, Shi, H., Patel, R., Duin, E. C., & Whitman, W. B. (2017, October 30). (Vol. 10). Vol. 10.

Sanguibacter gelidistatuariae sp. nov., a novel psychrotolerant anaerobe from an ice sculpture in Antarctica, and emendation of descriptions of the family Sanguibacteraceae, the genus Sanguibacter and species S. antarcticus, S. inulinus, S. kedieii, S. marinus, S. soli and S. suarezii

Pikuta, E. V., Lyu, Z., Williams, M. D., Patel, N. B., Liu, Y., Hoover, R. B., … Whitman, W. B. (2017, February 2). INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.

Williamwhitmania taraxaci gen. nov., sp. nov., a proteolytic anaerobe with a novel type of cytology from Lake Untersee in Antarctica, description of Williamwhitmaniaceae fam. nov., and emendation of the order Bacteroidales Krieg 2012

Pikuta, E. V., Lyu, Z., Hoover, R. B., Liu, Y., Patel, N. B., Busse, H. J., & Lawson, P. A. (2017, September 14). INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 9.

Engineering the Autotroph Methanococcus maripaludis for Geraniol Production.

ACS Synthetic Biology. http://europepmc.org/abstract/med/26886063

Evolution of the archaeal and mammalian information processing systems: towards an archaeal model for human disease.

http://europepmc.org/abstract/med/27261368

Raineyella antarctica gen. nov., sp. nov., a psychrotolerant, d-amino-acid-utilizing anaerobe isolated from two geographic locations of the Southern Hemisphere

Pikuta, E. V., Menes, R. J., Bruce, A. M., Lyu, Z., Patel, N. B., Liu, Y., … Whitman, W. B. (2016, October 13). INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 66, pp. 5529–5536,

Comparative genomics of three M ethanocellales strains reveal novel taxonomic and metabolic features

Lyu, Z., & Lu, Y. (2015, February 27). Environmental Microbiology Reports, Vol. 2, pp. n/a-n/a.

Microbiological investigation of two chondrite meteorites: Murchison and Polonnaruwa

Pikuta, E. V., Lyu, Z., Whitman, W. B., LaBrake, G. R., Wallis, J., Wickramarathne, K., … Hoover, R. B. (2015, September 11). (R. B. Hoover, G. V. Levin, A. Y. Rozanov, & N. C. Wickramasinghe, Eds.). Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE.

Molecular studies of anaerobic strains from Antarctica and their taxonomic identifications

Lyu, Z., Pikuta, E. V., Hagel, J., LaBrake, G. R., Hoover, R. B., & Whitman, W. B. (2015, September 11). (R. B. Hoover, G. V. Levin, A. Y. Rozanov, & N. C. Wickramasinghe, Eds.). Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE.

Response of a Rice Paddy Soil Methanogen to Syntrophic Growth as Revealed by Transcriptional Analyses

Liu, P., Yang, Y., Lü, Z., & Lu, Y. (2014, May 17). Applied and Environmental Microbiology, Vol. 5.

Complete Genome Sequence of a Thermophilic Methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil

Lü, Z., & Lu, Y. (2012, April 9). Journal of Bacteriology, Vol. 194, pp. 2398–2399.

Methanocella conradii sp. nov., a Thermophilic, Obligate Hydrogenotrophic Methanogen, Isolated from Chinese Rice Field Soil

Lü, Z., & Lu, Y. (2012, April 17). PLoS ONE.

Dynamics of the Methanogenic Archaeal Community during Plant Residue Decomposition in an Anoxic Rice Field Soil

Peng, J., Lü Zhe, Rui, J., & Lu, Y. (2008, March 15). Applied and Environmental Microbiology, Vol. 74, pp. 2894–2901.