Works Published in 2021

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Displaying works 1 - 20 of 29 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2021 conference paper

Parameterized algorithms for identifying gene co-expression modules via weighted clique decomposition

SIAM Conference on Applied and Computational Discrete Algorithms (ACDA21), 111–122.

By: M. Cooley, C. Greene, D. Issac, M. Pividori * & B. Sullivan* 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ

Contributors: B. Sullivan* 

Source: ORCID
Added: August 6, 2022

2021 article

Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms

BioRxiv.

By: M. Pividori *, S. Lu*, B. Li *, C. Su *, M. Johnson *, W. Wei*, Q. Feng *, B. Namjou * ...

co-author countries: United States of America πŸ‡ΊπŸ‡Έ

Contributors: M. Pividori *, S. Lu*, B. Li *, C. Su *, M. Johnson *, W. Wei*, Q. Feng *, B. Namjou * ...

Source: ORCID
Added: August 6, 2022

2021 journal article

An Updated Experimental Evaluation of Graph Bipartization Methods

ACM Journal of Experimental Algorithmics, 26.

By: T. Goodrich  n, E. Horton n & B. Sullivan n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ

Contributors: T. Goodrich  n, E. Horton n & B. Sullivan n 

Source: ORCID
Added: August 6, 2022

2021 article

Sparse dominating sets and balanced neighborhood partitioning

ArXiv. http://www.scopus.com/inward/record.url?eid=2-s2.0-85121833484&partnerID=MN8TOARS

By: Y. Mizutani, A. Staker & B. Sullivan 

Contributors: Y. Mizutani, A. Staker & B. Sullivan 

Source: ORCID
Added: August 6, 2022

2021 chapter

Secondary Structure Ensemble Analysis via Community Detection

In Association for Women in Mathematics Series (Vol. 22, pp. 55–81).

By: H. Du *, M. Ferrari *, C. Heitsch*, F. Hurley n, C. Mennicke n, B. Sullivan* , B. Xu *

co-author countries: United States of America πŸ‡ΊπŸ‡Έ

Contributors: H. Du *, M. Ferrari *, C. Heitsch*, F. Hurley n, C. Mennicke n, B. Sullivan* , B. Xu *

Source: ORCID
Added: August 6, 2022

2021 article

Parameterized algorithms for identifying gene co-expression modules via weighted clique decomposition

ArXiv. http://www.scopus.com/inward/record.url?eid=2-s2.0-85108789587&partnerID=MN8TOARS

By: M. Cooley, C. Greene, D. Issac, M. Pividori & B. Sullivan 

Contributors: M. Cooley, C. Greene, D. Issac, M. Pividori & B. Sullivan 

Source: ORCID
Added: August 6, 2022

2021 article

Hardness of the Generalized Coloring Numbers

ArXiv. http://www.scopus.com/inward/record.url?eid=2-s2.0-85121786987&partnerID=MN8TOARS

By: M. Breen-McKay, B. Lavallee & B. Sullivan 

Contributors: M. Breen-McKay, B. Lavallee & B. Sullivan 

Source: ORCID
Added: August 6, 2022

2021 article

Seeds of SEED: New Security Challenges for Persistent Memory

2021 INTERNATIONAL SYMPOSIUM ON SECURE AND PRIVATE EXECUTION ENVIRONMENT DESIGN (SEED 2021), pp. 83–88.

By: N. Ul Mustafa*, Y. Xu n, X. Shen n  & Y. Solihin*

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: Persistent memory objects; Security attacks; PMO vulnerability
Sources: Web Of Science, ORCID
Added: June 20, 2022

2021 article

Recurrent Neural Networks Meet Context-Free Grammar: Two Birds with One Stone

2021 21ST IEEE INTERNATIONAL CONFERENCE ON DATA MINING (ICDM 2021), pp. 1078–1083.

By: H. Guan *, U. Chaudhary*, Y. Xu n, L. Ning n, L. Zhang * & X. Shen n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: recurrent neural networks; data compression; context free grammar; tokenization
Sources: Web Of Science, ORCID
Added: May 2, 2022

2021 article

HPCFAIR: Enabling FAIR AI for HPC Applications

PROCEEDINGS OF THE WORKSHOP ON MACHINE LEARNING IN HIGH PERFORMANCE COMPUTING ENVIRONMENTS (MLHPC 2021), pp. 58–68.

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: HPC; FAIR; AI models; datasets; neural networks
Sources: Web Of Science, ORCID
Added: March 21, 2022

2021 article

HPC Ontology: Towards a Unified Ontology for Managing Training Datasets and AI Models for High-Performance Computing

PROCEEDINGS OF THE WORKSHOP ON MACHINE LEARNING IN HIGH PERFORMANCE COMPUTING ENVIRONMENTS (MLHPC 2021), pp. 69–80.

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: Ontology; HPC; FAIR; datasets; AI models
Sources: Web Of Science, ORCID
Added: March 21, 2022

2021 article

Toward Efficient Interactions between Python and Native Libraries

PROCEEDINGS OF THE 29TH ACM JOINT MEETING ON EUROPEAN SOFTWARE ENGINEERING CONFERENCE AND SYMPOSIUM ON THE FOUNDATIONS OF SOFTWARE ENGINEERING (ESEC/FSE '21), pp. 1117–1128.

co-author countries: Australia πŸ‡¦πŸ‡Ί United States of America πŸ‡ΊπŸ‡Έ
author keywords: Python; profiling; PMU; debug register
Sources: Web Of Science, ORCID
Added: March 7, 2022

2021 article

Revisit the Scalability of Deep Auto-Regressive Models for Graph Generation

2021 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN).

By: S. Yang n, X. Shen n  & S. Lim*

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
Sources: Web Of Science, ORCID
Added: January 10, 2022

2021 journal article

UDF to SQL Translation through Compositional Lazy Inductive Synthesis

PROCEEDINGS OF THE ACM ON PROGRAMMING LANGUAGES-PACMPL, 5(OOPSLA).

By: G. Zhang n, Y. Xu n, X. Shen n  & I. Dillig *

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: program synthesis; source-to-source compiler; query optimization
Sources: ORCID, Web Of Science
Added: January 2, 2022

2021 journal article

Coarsening Optimization for Differentiable Programming

PROCEEDINGS OF THE ACM ON PROGRAMMING LANGUAGES-PACMPL, 5(OOPSLA).

By: X. Shen n , G. Zhang n, I. Dea*, S. Andow*, E. Arroyo-Fang*, N. Gafter*, J. George*, M. Grueter* ...

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: differentiable programming; compiler; program optimizations; SSA; Calculus
Sources: ORCID, Web Of Science
Added: January 2, 2022

2021 article

Brief Industry Paper: Towards Real-Time 3D Object Detection for Autonomous Vehicles with Pruning Search

2021 IEEE 27TH REAL-TIME AND EMBEDDED TECHNOLOGY AND APPLICATIONS SYMPOSIUM (RTAS 2021), pp. 425–428.

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: 3D object detection; real-time; point cloud
Sources: Web Of Science, ORCID
Added: November 29, 2021

2021 journal article

How to "DODGE" Complex Software Analytics

IEEE TRANSACTIONS ON SOFTWARE ENGINEERING, 47(10), 2182–2194.

By: A. Agrawal *, W. Fu, D. Chen *, X. Shen n  & T. Menzies n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: Tuning; Text mining; Software; Task analysis; Optimization; Software engineering; Tools; Software analytics; hyperparameter optimization; defect prediction; text mining
Sources: Web Of Science, ORCID
Added: November 1, 2021

2021 article

Supporting Legacy Libraries on Non-Volatile Memory: A User-Transparent Approach

2021 ACM/IEEE 48TH ANNUAL INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE (ISCA 2021), pp. 443–455.

co-author countries: China πŸ‡¨πŸ‡³ United States of America πŸ‡ΊπŸ‡Έ
Sources: Web Of Science, ORCID
Added: October 26, 2021

2021 article

G-TADOC: Enabling Efficient GPU-Based Text Analytics without Decompression

2021 IEEE 37TH INTERNATIONAL CONFERENCE ON DATA ENGINEERING (ICDE 2021), pp. 1679–1690.

By: F. Zhang *, Z. Pan *, Y. Zhou*, J. Zhai *, X. Shen n , O. Mutlu, X. Du *

co-author countries: China πŸ‡¨πŸ‡³ United States of America πŸ‡ΊπŸ‡Έ
author keywords: TADOC; GPU; parallelism; analytics on compressed data
Sources: Web Of Science, ORCID
Added: September 20, 2021

2021 article

Hardware-Based Address-Centric Acceleration of Key-Value Store

2021 27TH IEEE INTERNATIONAL SYMPOSIUM ON HIGH-PERFORMANCE COMPUTER ARCHITECTURE (HPCA 2021), pp. 736–748.

co-author countries: China πŸ‡¨πŸ‡³ United States of America πŸ‡ΊπŸ‡Έ
Sources: Web Of Science, ORCID
Added: July 26, 2021

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