Works (27)

Updated: April 22nd, 2023 08:23

2023 article

Single-molecule acceptor rise time (smART) FRET for nanoscale distance sensitivity

Guo, J., Chen, X., Manna, P., Lin, X., Scott, M. N., Chen, W. J., … Schlau-Cohen, G. S. (2023, March 16).

Source: ORCID
Added: April 5, 2023

2022 journal article

Chromatin fiber breaks into clutches under tension and crowding

Nucleic Acids Research, 50(17), 9738–9747.

By: S. Liu*, X. Lin & B. Zhang*

Sources: ORCID, Crossref
Added: April 5, 2023

2022 journal article

Contact map dependence of a T-cell receptor binding repertoire

Physical Review E.

By: K. Chau*, J. George*, J. Onuchic*, X. Lin & H. Levine*

Source: ORCID
Added: April 5, 2023

2022 journal article

Ligand-induced transmembrane conformational coupling in monomeric EGFR

Nature Communications, 13(1).

By: S. Srinivasan*, R. Regmi, X. Lin, C. Dreyer, X. Chen, S. Quinn, W. He, M. Coleman ...

Sources: ORCID, Crossref
Added: April 5, 2023

2021 journal article

Cooperative DNA looping by PRC2 complexes

Nucleic Acids Research, 49(11), 6238–6248.

By: X. Lin, R. Leicher*, S. Liu* & B. Zhang*

Sources: ORCID, Crossref
Added: April 5, 2023

2021 journal article

Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms

Journal of Chemical Theory and Computation, 17(5), 3178–3187.

By: A. Oliveira Junior, X. Lin, P. Kulkarni*, J. Onuchic*, S. Roy* & V. Leite*

Sources: ORCID, Crossref
Added: April 5, 2023

2021 journal article

Multiscale modeling of genome organization with maximum entropy optimization

The Journal of Chemical Physics, 155(1), 010901.

By: X. Lin, Y. Qi*, A. Latham* & B. Zhang*

Sources: ORCID, Crossref
Added: April 5, 2023

2021 journal article

Rapid assessment of T-cell receptor specificity of the immune repertoire

Nature Computational Science, 1(5), 362–373.

By: X. Lin, J. George*, N. Schafer*, K. Ng Chau, M. Birnbaum*, C. Clementi*, J. Onuchic*, H. Levine*

Sources: Crossref, ORCID
Added: April 7, 2023

2021 journal article

Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface

Nature Communications, 12(1).

By: X. Ding*, X. Lin & B. Zhang*

Sources: ORCID, Crossref
Added: April 5, 2023

2020 journal article

Enhancing intracellular accumulation and target engagement of PROTACs with reversible covalent chemistry

Nature Communications, 11(1).

By: W. Guo*, X. Qi*, X. Yu*, Y. Liu*, C. Chung*, F. Bai*, X. Lin, D. Lu* ...

Sources: ORCID, Crossref
Added: April 5, 2023

2020 journal article

Molecular-replacement phasing using predicted protein structures from AWSEM-Suite

IUCrJ, 7(6), 1168–1178.

By: S. Jin*, M. Miller*, M. Chen*, N. Schafer*, X. Lin, X. Chen*, G. Phillips*, P. Wolynes*

Sources: ORCID, Crossref
Added: April 5, 2023

2020 journal article

Protein Structure Prediction in CASP13 Using AWSEM-Suite

Journal of Chemical Theory and Computation, 16(6), 3977–3988.

By: S. Jin, M. Chen, X. Chen*, C. Bueno, W. Lu*, N. Schafer, X. Lin, J. Onuchic*, P. Wolynes*

Sources: ORCID, Crossref
Added: April 5, 2023

2020 journal article

Protein Structure Refinement Guided by Atomic Packing Frustration Analysis

The Journal of Physical Chemistry B, 124(48), 10889–10898.

By: M. Chen*, X. Chen*, S. Jin*, W. Lu*, X. Lin & P. Wolynes*

Sources: Crossref, ORCID
Added: April 6, 2023

2020 journal article

Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin

Proceedings of the National Academy of Sciences, 117(48), 30465–30475.

By: R. Leicher*, E. Ge*, X. Lin, M. Reynolds*, W. Xie*, T. Walz*, B. Zhang*, T. Muir*, S. Liu*

Sources: ORCID, Crossref
Added: April 5, 2023

2019 journal article

Forging tools for refining predicted protein structures

Proceedings of the National Academy of Sciences, 116(19), 9400–9409.

By: X. Lin, N. Schafer*, W. Lu*, S. Jin*, X. Chen*, M. Chen*, J. Onuchic*, P. Wolynes*

Sources: ORCID, Crossref
Added: April 5, 2023

2019 journal article

Recent Advances in Computational Protocols Addressing Intrinsically Disordered Proteins

Biomolecules, 9(4), 146.

By: S. Bhattacharya* & X. Lin

Sources: ORCID, Crossref
Added: April 5, 2023

2019 journal article

Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level

Biomolecules, 9(2), 77.

By: X. Lin, P. Kulkarni*, F. Bocci*, N. Schafer*, S. Roy*, M. Tsai*, Y. He*, Y. Chen* ...

author keywords: PAGE4; intrinsically disordered proteins; conformational plasticity; order-disorder transition; phosphorylation
Sources: ORCID, Crossref, Web Of Science
Added: March 25, 2019

2018 journal article

Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill

Proceedings of the National Academy of Sciences, 115(34).

By: X. Lin, J. Noel*, Q. Wang*, J. Ma* & J. Onuchic*

Sources: ORCID, Crossref
Added: April 5, 2023

2018 journal article

PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer

Journal of Molecular Biology, 430(16), 2422–2438.

By: X. Lin, S. Roy*, M. Jolly*, F. Bocci*, N. Schafer*, M. Tsai*, Y. Chen*, Y. He* ...

author keywords: intrinsically disordered protein; PAGE4; AWSEM; order-disorder transition; non-genetic heterogeneity
Sources: ORCID, Crossref
Added: February 5, 2020

2018 journal article

Template-Guided Protein Structure Prediction and Refinement Using Optimized Folding Landscape Force Fields

Journal of Chemical Theory and Computation, 14(11), 6102–6116.

By: M. Chen*, X. Lin, W. Lu*, N. Schafer*, J. Onuchic* & P. Wolynes*

Sources: ORCID, Crossref
Added: April 5, 2023

2017 journal article

Quantum Image Processing and Its Application to Edge Detection: Theory and Experiment

Physical Review X, 7(3).

By: X. Yao*, H. Wang*, Z. Liao*, M. Chen*, J. Pan*, J. Li*, K. Zhang*, X. Lin ...

Sources: ORCID, Crossref
Added: April 5, 2023

2016 journal article

Lowered pH Leads to Fusion Peptide Release and a Highly Dynamic Intermediate of Influenza Hemagglutinin

The Journal of Physical Chemistry B, 120(36), 9654–9660.

By: X. Lin, J. Noel*, Q. Wang*, J. Ma* & J. Onuchic*

Sources: ORCID, Crossref
Added: April 5, 2023

2016 journal article

Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins

The Journal of Physical Chemistry B, 121(15), 3473–3482.

By: M. Chen*, X. Lin, W. Lu*, J. Onuchic* & P. Wolynes*

Sources: ORCID, Crossref
Added: April 5, 2023

2016 journal article

Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model

The Journal of Physical Chemistry B, 120(33), 8557–8565.

By: M. Chen*, X. Lin, W. Zheng*, J. Onuchic* & P. Wolynes*

Sources: ORCID, Crossref
Added: April 5, 2023

2014 journal article

Order and disorder control the functional rearrangement of influenza hemagglutinin

Proceedings of the National Academy of Sciences, 111(33), 12049–12054.

By: X. Lin, N. Eddy*, J. Noel*, P. Whitford*, Q. Wang*, J. Ma*, J. Onuchic*

Sources: ORCID, Crossref
Added: April 5, 2023

2010 journal article

Measurement method of logical gate in bulk spin quantum computer

Wuhan Ligong Daxue Xuebao/Journal of Wuhan University of Technology, 32(15), 142–145.

By: X. Yao, Z. Chen, X. Mu, J. Pan, C. Yang, X. Lin, J. Lian, X. Wang

Source: ORCID
Added: April 5, 2023

2010 journal article

Subspace quantum process tomography via nuclear magnetic resonance

Acta Physica Sinica, 59(10), 6837.

By: Z. Bi-Rong, L. Qin, M. Xiao-Yang, L. Xing-Cheng, Y. Chun, P. Jian, C. Zhong

Sources: Crossref, ORCID
Added: April 7, 2023

Employment

Updated: December 17th, 2018 23:06

2018 - present

Massachusetts Institute of Technology Cambridge, MA, US
Postdoctoral Fellow Chemistry

2018 - 2018

Rice University Houston, TX, US
Post-doctoral Researcher Center for Theoretical Biological Physics

Education

Updated: February 11th, 2018 23:45

2011 - present

Rice University Houston, TX, US
Doctor Physics and Astronomy