Recent Works
search all worksSorted by most recent date added to the index first, which may not be the same as publication date order.
2025 article
VILMIR is a trans-acting long noncoding RNA that enhances the host interferon response in human epithelial cells
John, K., Smith, E., Istishin, A., Mahmood, N., Diveley, K., Tollison, T. S., … Peng, X. (2025, August 22).
2025 article
Active regulation of the epidermal growth factor receptor by the membrane bilayer
Srinivasan, S., Lin, X., Chen, X., Regmi, R., Zhang, B., & Schlau-Cohen, G. S. (2025, August 18).
2025 article
Phased chromosome-level assembly provides insight into the genome architecture of hexaploid sweetpotato
Wu, S., Sun, H., Zhao, X., Hamilton, J. P., Mollinari, M., Gesteira, G. D. S., … Fei, Z. (2025, August 8). NATURE PLANTS.
2025 article
KeySDL: Sparse Dictionary Learning for Keystone Microbe Identification
Gordon, M., Akyol, T. Y., Amos, B., Andersen, S. U., & Williams, C. (2025, August 11).
2025 journal article
Cervicovaginal microbial features predict Chlamydia trachomatis spread to the upper genital tract of infected women
Infection and Immunity.
Ed(s): M. Raffatellu
2025 journal article
No more laborious stem counting: AI-powered computer vision enables identification and quantification of solid and hollow alfalfa stems at the pixel level
Smart Agricultural Technology.
2025 journal article
High-throughput classification and quantification of skinning phenotype in sweet potatoes
PLANT PHENOME JOURNAL, 8(1).
2025 journal article
Experimental Evolution of <i>Phytophthora infestans</i> on Tomato Reveals Rapid Genotypic and Phenotypic Adaptation and Dynamic RXLR Genome Variation
Coomber, A., Rasmussen, D. A., & Ristaino, J. B. (2025, July 31). PHYTOPATHOLOGY, Vol. 7.
2025 article
Genomic Evaluation of Canine Prostatic Carcinomas as a Model for the Human Disease
Thomas, R., Luff, J. A., Dickey, A. N., Dillon, M. N., Livingston, I. G., Schrag, C. A., … Breen, M. (2025, July 23). VETERINARY AND COMPARATIVE ONCOLOGY, Vol. 7.

2025 journal article
Spiner, deep learning-based automated detection of spiral ganglion neurons in intact cochleae
ISCIENCE, 28(7).
2025 journal article
Genetic effects on chromatin accessibility uncover mechanisms of liver gene regulation and quantitative traits
GENOME RESEARCH, 35(7), 1485–1502.
2025 journal article
Signature gene expression model for quantitative evaluation of MASH-like liver injury in mice☆
TOXICOLOGY AND APPLIED PHARMACOLOGY, 502.
2025 journal article
Spatiotemporal dynamics of NF-κB/Dorsal inhibitor IκBα/Cactus in<i> Drosophila</i> blastoderm embryos
ISCIENCE, 28(7).
2025 journal article
Interpretable protein-DNA interactions captured by structure-sequence optimization
ELife.
2025 journal article
NIAGADS: A data repository for Alzheimer's disease and related dementia genomics
ALZHEIMERS & DEMENTIA, 21(6).
2025 journal article
Structural variation detection and association analysis of whole-genome-sequence data from 16,543 Alzheimer's disease sequencing project subjects
ALZHEIMERS & DEMENTIA, 21(6).
2025 article
A network perspective on the evolution of hybrid incompatibilities
Brud, E., & Guerrero, R. F. (2025, July 15).
2025 journal article
Yeast Surface Display of Protein Addresses Confers Robust Storage and Access of DNA-Based Data
DNA.
2025 article
Optimizing genomic sampling for demographic and epidemiological inference with Markov decision processes
Rasmussen, D. A., Bursell, M. G., & Burkhart, F. (2025, July 4).
2025 article
Guidelines for preventing and reporting contamination in low-biomass microbiome studies
Fierer, N., Leung, P. M., Lappan, R., Eisenhofer, R., Ricci, F., Holland, S. I., … Greening, C. (2025, June 20). NATURE MICROBIOLOGY, Vol. 6.

2025 article
Knowledge and Opportunities for Managing Plant-Parasitic Nematodes Using Decision Intelligence
Roberts, D. L., Gorny, A., Jones, D. S., Kudenov, M. W., Pratt, L., Malcolm, N., & Williams, C. (2025, June 18). PHYTOFRONTIERS, Vol. 6.
2025 journal article
Optimization of Adventitious Shoot Regeneration Protocols for Six<i> Vaccinium corymbosum </i>Cultivars
HORTSCIENCE, 60(7), 1109–1117.
2025 article
Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors
Selberg, A., Clark, N. L., Sackton, T. B., Muse, S. V., Lucaci, A. G., Weaver, S., … Pond, S. L. K. (2025, June 26).
2025 article
Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors
Selberg, A., Clark, N. L., Sackton, T. B., Muse, S. V., Lucaci, A. G., Weaver, S., … Pond, S. L. K. (2025, June 26).
2025 journal article
Characterizing DNA recognition preferences of transcription factors using global couplings and high-throughput sequencing
NUCLEIC ACIDS RESEARCH, 53(12).