Bioinformatics Research Center

Recent Works

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Sorted by most recent date added to the index first, which may not be the same as publication date order.

2026 journal article

In-season yield forecasting using multitemporal remote sensing environmental observations and machine learning: Applications for sweetpotato in North Carolina, USA

EUROPEAN JOURNAL OF AGRONOMY, 172.

By: M. Carbajal, D. Jones, C. Williams & N. Nelson

author keywords: USA; Agricultural census data; Ensemble learning algorithms; Yield prediction; Vegetation index; Satellite-derived composites; Agricultural decision-making
topics (OpenAlex):
Sources: ORCID, Web Of Science, NC State University Libraries
Added: September 10, 2025

2025 article

Fetal Polygenic Growth Score and Risk for Large for Gestational Age Birth Weight in Nulliparas: Secondary Analysis of a Prospective Cohort Study

Aamir, M., Feghali, M., Yee, L., Silver, R., Durnwald, C., Steller, J. G., … Scifres, C. M. (2025, November 4).

By: M. Aamir, M. Feghali, L. Yee, R. Silver, C. Durnwald, J. Steller, D. Haas, R. Guerrero, C. Scifres

Source: ORCID
Added: November 4, 2025

2025 article

Hi-C informed kernel association test: integrating 3-dimensional genome structure into variant-set association for whole-genome sequencing data

Basu, R., Huang, Y., Tzeng, J. Y., Lu, W., Holloway, S., & Li, Y. (2025, October 30).

By: Y. Huang, R. Basu, W. Lu, S. Holloway, Y. Li & J. Tzeng

topics (OpenAlex):
Source: ORCID
Added: October 30, 2025

2025 article

Gonadal Transcriptome Differences Between the Sexes in Wild Caught Southern Flounder (Paralichthys lethostigma) During a Critical Development Period

Harned, S., Mankiewicz, J. L., Smith, E., Borski, R. J., Guerrero, R. F., Reiskind, M. B., & Godwin, J. (2025, October 22).

By: S. Harned, J. Mankiewicz, E. Smith, R. Borski, R. Guerrero, M. Reiskind, J. Godwin

topics (OpenAlex):
Source: ORCID
Added: October 22, 2025

2025 article

Active regulation of the epidermal growth factor receptor by the membrane bilayer

Srinivasan, S., Lin, X., Chen, X., Regmi, R., Zhang, B., & Schlau-Cohen, G. S. (2025, October 13).

By: S. Srinivasan, X. Lin, X. Chen, R. Regmi, B. Zhang & G. Schlau-Cohen

topics (OpenAlex):
Source: ORCID
Added: October 13, 2025

2025 article

Active regulation of the epidermal growth factor receptor by the membrane bilayer

Srinivasan, S., Lin, X., Chen, X., Regmi, R., Zhang, B., & Schlau-Cohen, G. S. (2025, October 13).

By: S. Srinivasan, X. Lin, X. Chen, R. Regmi, B. Zhang & G. Schlau-Cohen

topics (OpenAlex):
Source: ORCID
Added: October 13, 2025

2025 journal article

Uterine histotroph and conceptus development. V. Comparative analyses of arginine-mediated transcriptomic reprogramming in conceptus trophectoderm of pigs and sheep

Biology of Reproduction.

By: S. Paudel, X. Wang, H. Yu, T. Wang, X. Peng, F. Bazer, R. Burghardt, G. Hu, X. Wang

topics (OpenAlex):
Source: ORCID
Added: October 7, 2025

2025 article

Maternal and offspring genome-wide association study of C-reactive protein reveals limited polygenic association with gestational diabetes mellitus

Zhang, Y., Moore, A., Ryckman, K. K., Yan, Q., Guerrero, R. F., Li, M., … Liu, N. (2025, October 2).

By: Y. Zhang, A. Moore, K. Ryckman, Q. Yan, R. Guerrero, M. Li, R. Silver, L. Yee ...

topics (OpenAlex):
Source: ORCID
Added: October 2, 2025

2025 article

Bridging Genomics and Grower Needs: Developing Molecular Tools for Phenology and Quality Improvement in Blueberry Breeding Programs

Ashrafi, H. (2025, September 29). [Data Management Plan]. DMP Tool.].

By: H. Ashrafi

topics (OpenAlex):
Source: ORCID
Added: September 29, 2025

2025 journal article

Linkage map construction and QTL mapping for morphological traits in <i>Ipomoea trifida</i>, a diploid sweetpotato relative

PLANT GENOME, 18(3).

co-author countries: Brazil 🇧🇷 Kenya 🇰🇪 Peru 🇵🇪
MeSH headings : Quantitative Trait Loci; Chromosome Mapping; Ipomoea / genetics; Ipomoea / anatomy & histology; Polymorphism, Single Nucleotide; Diploidy; Phenotype; Genetic Linkage; Chromosomes, Plant / genetics; Ipomoea batatas / genetics
topics (OpenAlex): Genetic Mapping and Diversity in Plants and Animals
Sources: Web Of Science, NC State University Libraries
Added: September 29, 2025

2025 article

Assessing contamination in DNA extraction kits commonly used for microbiome research

Rabasco, J. T., Kisthardt, S. C., Theriot, C. M., & Callahan, B. J. (2025, September 23).

By: J. Rabasco, S. Kisthardt, C. Theriot & B. Callahan

topics (OpenAlex):
Source: ORCID
Added: September 24, 2025

2025 journal article

Deployment and analysis of instance segmentation algorithm for in-field yield estimation of sweet potatoes

PLANT PHENOME JOURNAL, 8(1).

By: H. Nguyen, S. Gyurek, R. Mierop, K. Pecota, K. Lagamba, M. Boyette, G. Yencho, C. Williams, M. Kudenov

topics (OpenAlex):
Sources: ORCID, Web Of Science, NC State University Libraries
Added: September 22, 2025

2025 article

IRIS Integrates Sparse Sequence, Experimental, and AI-Predicted Structures for Protein-RNA Affinity Prediction and Motif Discovery

Rosa, E. C., Zhang, Y., & Lin, X. (2025, September 16).

By: E. Rosa, Y. Zhang & X. Lin

topics (OpenAlex):
Source: ORCID
Added: September 16, 2025

2025 journal article

Organophosphate Flame Retardants Disrupt Autism-Relevant Gene Networks Across Development: A Cross-Species Multi-Omics Study

ENVIRONMENTAL RESEARCH, 286.

author keywords: Organophosphate flame retardants; Neurodevelopment; Transcriptomics; Lipidomics; Gene expression; Autism; Environmental toxicology
topics (OpenAlex): GDF15 and Related Biomarkers; RNA regulation and disease; RNA Research and Splicing; Nuclear Receptors and Signaling
Sources: ORCID, Web Of Science
Added: September 15, 2025

2025 journal article

Reliability and Usefulness of Seedling Plant Data in Cassava Breeding

Plants.

By: C. Phumichai, H. Ceballos, P. Pleeprom, T. Chomsuk, P. Kongsil, W. Wannarat, W. Siriwan, T. Jaisuwan ...

topics (OpenAlex):
Source: ORCID
Added: September 12, 2025

2025 article

Mediation analysis of the molecular phenotypes in a severe MASH-like liver injury mouse model

Song, Z., Tryndyak, V. P., Willett, R. A., Pogribny, I. P., Rusyn, I., & Wright, F. A. (2025, August 28). TOXICOLOGICAL SCIENCES.

author keywords: liver; steatohepatitis; fibrosis
topics (OpenAlex): Liver Disease Diagnosis and Treatment; Hepatitis B Virus Studies; Endoplasmic Reticulum Stress and Disease
Source: Web Of Science
Added: September 8, 2025

2025 article

Genetic linkage mapping in Megathyrsus maximus (Jacq.) with multiple dosage markers

Gesteira, G. de S., Ferreira, G. C., Mollinari, M., Santos, M. F., Jank, L., Vilela, M. de M., … Garcia, A. A. F. (2025, August 19). G3-GENES GENOMES GENETICS, Vol. 8.

By: G. Gesteira n, G. Ferreira*, M. Mollinari n, M. Santos, L. Jank, M. Vilela, A. Raposo, L. Chiari, Z. Zeng n, A. Garcia*

co-author countries: Brazil 🇧🇷
author keywords: linkage map; polyploid; autotetraploid; guineagrass
topics (OpenAlex): Genetic and phenotypic traits in livestock; Genetic and Environmental Crop Studies; Genetic diversity and population structure
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 25, 2025

2025 journal article

Injection of vocal fold lamina propria-derived hydrogels modulates fibrosis in injured vocal folds

BIOMATERIALS ADVANCES, 178.

By: C. Mora-Navarro n, E. Smith n, Z. Wang n, M. Ramos-Alamo*, L. Collins n, N. Awad*, D. Cruz*, T. Tollison n ...

co-author countries: Puerto Rico 🇵🇷
author keywords: Vocal fold lamina propria; Fibrosis; Extracellular matrix; Hydrogels; TGF-(31
topics (OpenAlex): Voice and Speech Disorders; Dysphagia Assessment and Management; Tissue Engineering and Regenerative Medicine
Sources: Web Of Science, NC State University Libraries
Added: August 25, 2025

2025 journal article

Two-body triton photodisintegration and Wigner-SU(4) symmetry

PHYSICAL REVIEW C, 112(2).

By: X. Lin & J. Vanasse

topics (OpenAlex): Molecular spectroscopy and chirality; Advanced Chemical Physics Studies
Sources: Web Of Science, NC State University Libraries
Added: August 25, 2025

2025 article

VILMIR is a trans-acting long noncoding RNA that enhances the host interferon response in human epithelial cells

John, K., Smith, E., Istishin, A., Mahmood, N., Diveley, K., Tollison, T. S., … Peng, X. (2025, August 22).

By: K. John, E. Smith, A. Istishin, N. Mahmood, K. Diveley, T. Tollison, S. Carpenter, X. Peng

topics (OpenAlex):
Source: ORCID
Added: August 22, 2025

2025 article

Active regulation of the epidermal growth factor receptor by the membrane bilayer

Srinivasan, S., Lin, X., Chen, X., Regmi, R., Zhang, B., & Schlau-Cohen, G. S. (2025, August 18).

By: S. Srinivasan, X. Lin*, X. Chen, R. Regmi, B. Zhang & G. Schlau-Cohen

topics (OpenAlex): Monoclonal and Polyclonal Antibodies Research; HER2/EGFR in Cancer Research
Source: ORCID
Added: August 19, 2025

2025 article

Phased chromosome-level assembly provides insight into the genome architecture of hexaploid sweetpotato

Wu, S., Sun, H., Zhao, X., Hamilton, J. P., Mollinari, M., Gesteira, G. D. S., … Fei, Z. (2025, August 8). NATURE PLANTS, Vol. 8.

co-author countries: China 🇨🇳
topics (OpenAlex): Plant Virus Research Studies; Chromosomal and Genetic Variations; Cocoa and Sweet Potato Agronomy
Sources: Web Of Science, NC State University Libraries
Added: August 18, 2025

2025 article

KeySDL: Sparse Dictionary Learning for Keystone Microbe Identification

Gordon, M., Akyol, T. Y., Amos, B., Andersen, S. U., & Williams, C. (2025, August 11).

co-author countries: Denmark 🇩🇰
topics (OpenAlex): Gut microbiota and health; Bacterial Identification and Susceptibility Testing; Genomics and Phylogenetic Studies; Oral microbiology and periodontitis research; Machine Learning in Bioinformatics
Source: ORCID
Added: August 15, 2025

2025 article

Cervicovaginal microbial features predict <i>Chlamydia trachomatis</i> spread to the upper genital tract of infected women

Jeong, S., Tollison, T., Brochu, H., Chou, H., Huntress, I., Yount, K. S., … Peng, X. (2025, August 12). (M. Raffatellu, Ed.). INFECTION AND IMMUNITY, Vol. 8.

Ed(s): M. Raffatellu

author keywords: cervicovaginal microbiome; <italic>Chlamydia trachomatis</italic>; upper genital tract infection; 16S rRNA sequencing
topics (OpenAlex): Reproductive tract infections research; Pelvic floor disorders treatments; Urinary Tract Infections Management
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 12, 2025

2025 journal article

No more laborious stem counting: AI-powered computer vision enables identification and quantification of solid and hollow alfalfa stems at the pixel level

SMART AGRICULTURAL TECHNOLOGY, 12.

By: B. Weihs, Z. Tang, S. Roy*, Z. Tian, D. Heuschele, Z. Zhang, C. Williams*, Z. Zhang ...

author keywords: YOLO; Computer vision; Alfalfa; Image analysis; Pixel; Stem hollowness
topics (OpenAlex): Industrial Vision Systems and Defect Detection; Smart Agriculture and AI; Spectroscopy and Chemometric Analyses
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 8, 2025

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