Bioinformatics Research Center

Experimental Evolution of Phytophthora infestans on Tomato Reveals Rapid Genotypic and Phenotypic Adaptation and Dynamic RXLR Genome Variation

Phytopathology®.

Genomic Evaluation of Canine Prostatic Carcinomas as a Model for the Human Disease

Thomas, R., Luff, J. A., Dickey, A. N., Dillon, M. N., Livingston, I. G., Schrag, C. A., … Breen, M. (2025, July 23). VETERINARY AND COMPARATIVE ONCOLOGY.

Spiner, deep learning-based automated detection of spiral ganglion neurons in intact cochleae

ISCIENCE, 28(7).

Genetic effects on chromatin accessibility uncover mechanisms of liver gene regulation and quantitative traits

GENOME RESEARCH, 35(7), 1485–1502.

Signature gene expression model for quantitative evaluation of MASH-like liver injury in mice☆

TOXICOLOGY AND APPLIED PHARMACOLOGY, 502.

Spatiotemporal dynamics of NF-κB/Dorsal inhibitor IκBα/Cactus in<i> Drosophila</i> blastoderm embryos

ISCIENCE, 28(7).

NIAGADS: A data repository for Alzheimer's disease and related dementia genomics

ALZHEIMERS & DEMENTIA, 21(6).

Structural variation detection and association analysis of whole-genome-sequence data from 16,543 Alzheimer's disease sequencing project subjects

ALZHEIMERS & DEMENTIA, 21(6).

Guidelines for preventing and reporting contamination in low-biomass microbiome studies

Fierer, N., Leung, P. M., Lappan, R., Eisenhofer, R., Ricci, F., Holland, S. I., … Greening, C. (2025, June 20). NATURE MICROBIOLOGY, Vol. 6.

Knowledge and Opportunities for Managing Plant-Parasitic Nematodes Using Decision Intelligence

Roberts, D. L., Gorny, A., Jones, D. S., Kudenov, M. W., Pratt, L., Malcolm, N., & Williams, C. (2025, June 18). PHYTOFRONTIERS, Vol. 6.

Optimization of Adventitious Shoot Regeneration Protocols for Six<i> Vaccinium corymbosum </i>Cultivars

HORTSCIENCE, 60(7), 1109–1117.

Asian diversity in human immune cells

CELL, 188(8).

The integration of quantitative trait locus mapping and transcriptome studies reveals candidate genes for water stress response in St. Augustinegrass

BMC PLANT BIOLOGY, 25(1).

A Class of Allopolyploidy Showing High Duplicate Retention and Continued Homoeologous Exchanges

GENOME BIOLOGY AND EVOLUTION, 17(4).

A theory of heterosis

Zeng, Z.-B., Gesteira, G. D. S., Mo, L., Xiao, Y., & Yan, J. (2025, April 8). GENETICS.

A workflow for human health hazard evaluation using transcriptomic data and Key Characteristics-based gene sets

Tsai, H.-H. D., Oware, K. D., Wright, F. A., Chiu, W. A., & Rusyn, I. (2025, April 3). TOXICOLOGICAL SCIENCES.

Identification of late blight resistance QTLs <i>in an interspecific RIL population of tomato </i>via genotyping-by-sequencing

MOLECULAR BREEDING, 45(4).

Co-occurrence drives horizontal gene transfer among marine prokaryotes

Douglas, G. M., Tromas, N., Gaudin, M., Lypaczewksi, P., Bobay, L.-M., Shapiro, B. J., & Chaffron, S. (2025, March 28).

Development of ferret immune repertoire reference resources and single-cell-based high-throughput profiling assays

Walsh, E. S., Yang, K., Tollison, T. S., Seenu, S., Adams, N., Zeitoun, G., … Peng, X. (2025, March 21). JOURNAL OF VIROLOGY, Vol. 3.

Human long noncoding RNA <i>VILMIR</i> is induced by major respiratory viral infections and modulates the host interferon response

John, K., Huntress, I., Smith, E., Chou, H., Tollison, T. S., Covarrubias, S., … Peng, X. (2025, March 25). (T. Gallagher, Ed.). JOURNAL OF VIROLOGY, Vol. 3.

Diagnostic-avoiding <i>Chlamydia trachomatis</i> variants detected in cervical and endometrial specimens from women during 16S microbiome profiling

BMC INFECTIOUS DISEASES, 25(1).

Genetic control of prickles in tetraploid blackberry

Johns, C. A., Silva, A., Chizk, T. M., Nelson, L., Clark, J. R., Aryal, R., … Worthington, M. L. (2025, April 23). (E. Akhunov, Ed.). G3-GENES GENOMES GENETICS, Vol. 3.

Copy Number Variation and Haplotype Analysis of 17q21.31 Reveals Increased Risk Associated with Progressive Supranuclear Palsy and Gene Expression Changes in Neuronal Cells

Wang, H., Chang, T. S., Dombroski, B. A., Cheng, P.-L., Si, Y.-Q., Tucci, A., … Grp, P. S. P. G. S. (2025, March 8). MOVEMENT DISORDERS, Vol. 3.

A high sensitivity assay of UBE3A ubiquitin ligase activity

METHODS, 235, 92–99.

Connected Chromatin Amplifies Acetylation-Modulated Nucleosome Interactions

Li, R., & Lin, X. (2025, March 3). BIOCHEMISTRY, Vol. 3.