Works (7)

Updated: July 17th, 2023 21:17

2017 journal article

A gene encoding maize caffeoyl-CoA O-methyltransferase confers quantitative resistance to multiple pathogens

Nature Genetics, 49(9), 1364–1372.

By: Q. Yang n, Y. He n, M. Kabahuma*, T. Chaya*, A. Kelly n, E. Borrego*, Y. Bian n, F. El Kasmi* ...

Contributors: Q. Yang n, Y. He n, M. Kabahuma*, T. Chaya*, A. Kelly n, E. Borrego*, Y. Bian n, F. El Kasmi* ...

MeSH headings : Apoptosis / genetics; Chromosome Mapping / methods; Disease Resistance / genetics; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Genes, Plant / genetics; Lignin / metabolism; Methyltransferases / genetics; Methyltransferases / metabolism; Microscopy, Fluorescence; Mutation; Phenylpropionates / metabolism; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Leaves / genetics; Plant Leaves / metabolism; Plant Leaves / microbiology; Plants, Genetically Modified; Quantitative Trait Loci / genetics; Reverse Transcriptase Polymerase Chain Reaction; Zea mays / genetics; Zea mays / metabolism; Zea mays / microbiology
TL;DR: It is suggested that resistance might be caused by allelic variation at the level of both gene expression and amino acid sequence, thus resulting in differences in levels of lignin and other metabolites of the phenylpropanoid pathway and regulation of programmed cell death. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations

HEREDITY, 118(6), 585–593.

By: Y. Bian n & J. Holland n

Contributors: Y. Bian n & J. Holland n

MeSH headings : Computer Simulation; Genetic Association Studies; Genetics, Population; Genomics / methods; Genotype; Models, Genetic; Multifactorial Inheritance; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Zea mays / genetics
TL;DR: The approach provides a new integrative modeling approach for both reliable gene discovery and robust GP that includes the fixed effects of the most significantly associated SNPs along with the polygenic background for moderately complex but not highly polygenic traits measured in the maize nested association mapping population. (via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2016 journal article

The Genetics of Leaf Flecking in Maize and Its Relationship to Plant Defense and Disease Resistance

Plant Physiology, 172(3), 1787–1803.

MeSH headings : Alleles; Chromosome Mapping; Disease Resistance / genetics; Genetics, Population; Genome-Wide Association Study; Inbreeding; Light; Phenotype; Plant Diseases / genetics; Plant Diseases / immunology; Plant Leaves / genetics; Plant Leaves / radiation effects; Polymorphism, Single Nucleotide / genetics; Quantitative Trait Loci / genetics; Reactive Oxygen Species / metabolism; Seeds / genetics; Zea mays / genetics; Zea mays / radiation effects
TL;DR: Evidence is presented suggesting that mild flecking could be used as a selection criterion for breeding programs trying to incorporate broad-spectrum disease resistance and positive correlations were found between increased flecking, stronger defense response, increased disease resistance, and increased pest resistance. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018

2015 journal article

Ensemble Learning of QTL Models Improves Prediction of Complex Traits

G3-GENES GENOMES GENETICS, 5(10), 2073–2084.

By: Y. Bian n & J. Holland n

Contributors: Y. Bian n & J. Holland n

author keywords: quantitative trait loci; thinning and aggregating; ensemble modeling; Zea mays
MeSH headings : Algorithms; Chromosome Mapping; Genetic Association Studies; Genetic Linkage; Genotype; Models, Genetic; Phenotype; Quantitative Trait Loci; Quantitative Trait, Heritable; Reproducibility of Results; Zea mays / genetics
TL;DR: An ensemble model combining predictions from TAGGING-assisted QTL and infinitesimal models improved prediction abilities over the component models, indicating some complementarity between model assumptions and suggesting that some trait genetic architectures involve a mixture of a few majorQTL and polygenic effects. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2015 journal article

Joint-multiple family linkage analysis predicts within-family variation better than single-family analysis of the maize nested association mapping population

HEREDITY, 114(6), 552–563.

By: F. Ogut n, Y. Bian n, P. Bradbury* & J. Holland*

Contributors: F. Ogut n, Y. Bian n, P. Bradbury* & J. Holland*

MeSH headings : Chromosome Mapping / methods; Genetic Linkage; Genetic Markers; Genetics, Population; Models, Genetic; Quantitative Trait Loci; Zea mays / genetics
TL;DR: The superior predictive ability of joint-family QTL models despite important genetic differences among families suggests that joint- family models capture sufficient smaller effect QTL that is shared across families to compensate for missing some rare large-effect QTL. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2014 journal article

Limits on the reproducibility of marker associations with southern leaf blight resistance in the maize nested association mapping population

BMC GENOMICS, 15(1).

By: Y. Bian n, Q. Yang n, P. Balint-Kurti n, R. Wisser* & J. Holland n

Contributors: Y. Bian n, Q. Yang n, P. Balint-Kurti n, R. Wisser* & J. Holland n

author keywords: Quantitative trait loci; Nested association mapping; Disease resistance; Genome wide association study; Zea mays
MeSH headings : Alleles; Chromosome Mapping; Chromosomes, Plant / genetics; Disease Resistance / genetics; Genetic Linkage; Genome-Wide Association Study; Genotype; Linkage Disequilibrium; Phenotype; Plant Leaves / genetics; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Zea mays / genetics
TL;DR: The highly polygenic nature of resistance to SLB complicates the identification of causal genes and the updated NAM genetic linkage map improves QTL estimation and, along with a much denser SNP HapMap, greatly increases the likelihood of detecting SNPs in linkage with causal variants. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2014 journal article

Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure

MOLECULAR BREEDING, 34(2), 675–689.

By: Y. Bian n, J. Ballington n, A. Raja n, C. Brouwer*, R. Reid*, M. Burke*, X. Wang*, L. Rowland, N. Bassil*, A. Brown n

author keywords: Blueberry; Vaccinium; Genetic diversity; SSR; STRUCTURE
TL;DR: The analysis of population structure among blueberry accessions revealed inter- and intra-specific levels of stratification and the identification of substructure that correlates with known pedigree information, and the availability of new genomic molecular markers will facilitate future evolutionary and genetic studies in blueberry. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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