Srijeet Kumar Mitra

Works (5)

Updated: July 5th, 2023 15:55

2015 journal article

An autophosphorylation site database for leucine-rich repeat receptor-like kinases in Arabidopsis thaliana

PLANT JOURNAL, 82(6), 1042–1060.

By: S. Mitra n, R. Chen n, M. Dhandaydham n, X. Wang n, R. Blackburn n, U. Kota n, M. Goshe  n, D. Schwartz *, S. Huber *, S. Clouse n

author keywords: receptor kinase; phosphorylation; Arabidopsis thaliana; mass spectrometry; motif analysis
MeSH headings : Amino Acid Motifs; Amino Acid Sequence; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytoplasm / metabolism; Databases, Factual; Escherichia coli / genetics; Molecular Sequence Data; Phosphorylation; Protein Kinases / genetics; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Protein Structure, Tertiary
TL;DR: This study employed high-throughput cloning and a variety of mass spectrometry approaches to generate an autophosphorylation site database representative of more than 30% of the approximately 223 LRR RLKs in Arabidopsis thaliana, and used this database to analyze trends in the localization of phosphorylation sites across cytoplasmic kinase subdomains. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Identification and Functional Analysis of Tomato BRI1 and BAK1 Receptor Kinase Phosphorylation Sites

PLANT PHYSIOLOGY, 163(1), 30–42.

By: V. Bajwa n, X. Wang*, R. Blackburn  n, M. Goshe n, S. Mitra*, E. Williams*, G. Bishop *, S. Krasnyanski* ...

MeSH headings : Binding Sites; Kinetics; Solanum lycopersicum / enzymology; Phosphorylation; Plant Proteins / chemistry; Plant Proteins / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / metabolism; Signal Transduction
TL;DR: Liquid chromatography-tandem mass spectrometry was used to identify multiple in vitro phosphorylation sites of the tomato BRI1 and BAK1 cytoplasmic domains and found that tomato TRIP1 is a substrate of both tomato Bri1 andBAK1 kinases in vitro. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Improving Protein and Proteome Coverage through Data-Independent Multiplexed Peptide Fragmentation

JOURNAL OF PROTEOME RESEARCH, 9(7), 3621–3637.

By: K. Blackburn n, F. Mbeunkui n, S. Mitra n, T. Mentzel n & M. Goshe n

author keywords: Proteomics; mass spectrometry; protein characterization; data-independent acquisition (DIA); data-dependent acquisition (DDA); protein identification; LC/MSE
MeSH headings : Amino Acid Sequence; Animals; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Artifacts; Cattle; Chromatography, Liquid / methods; Ions / chemistry; Solanum lycopersicum; Mass Spectrometry / methods; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / metabolism; Plant Leaves; Plant Proteins / chemistry; Plant Proteins / metabolism; Protein Kinases / chemistry; Protein Kinases / metabolism; Proteomics / methods; Serum Albumin, Bovine / chemistry; Serum Albumin, Bovine / metabolism; Trypsin / metabolism
TL;DR: The fundamental limitations of serial MS/MS interrogation are revealed and the advantages of parallel fragmentation by DIA for more comprehensive protein identification and characterization are revealed which holds promise for enhanced isoform and post-translational modification analysis. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2009 journal article

An Efficient Organic Solvent Based Extraction Method for the Proteomic Analysis of Arabidopsis Plasma Membranes

JOURNAL OF PROTEOME RESEARCH, 8(6), 2752–2767.

By: S. Mitra n, B. Walters  n, S. Clouse n & M. Goshe n

author keywords: Proteomics; mass spectrometry; liquid chromatography; strong cation exchanges; phase partitioning; membrane proteins; transporters; Arabidopsis; methanol
MeSH headings : Amino Acid Sequence; Arabidopsis / chemistry; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / isolation & purification; Arabidopsis Proteins / metabolism; Chemical Fractionation / methods; Chloroform; Chlorophyll; Chromatography, Ion Exchange; Databases, Protein; Membrane Proteins / chemistry; Membrane Proteins / isolation & purification; Membrane Proteins / metabolism; Methanol; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / metabolism; Protein Kinases / isolation & purification; Protein Kinases / metabolism; Proteomics / methods; Solvents / chemistry; Tandem Mass Spectrometry; Trypsin / metabolism
TL;DR: The combined use of methanol and chloroform provides an effective method to study membrane proteins and can be readily applied to other tissues and cells types for proteomic analysis. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques

JOURNAL OF PROTEOME RESEARCH, 6(5), 1933–1950.

By: S. Mitra n, J. Gantt n, J. Ruby n, S. Clouse n & M. Goshe n

author keywords: arabidopsis; proteomics; liquid chromatography; mass spectrometry; membrane proteins; phosphorylation; leucine-rich repeat receptor-like kinases
MeSH headings : Amino Acid Sequence; Arabidopsis / chemistry; Arabidopsis / cytology; Arabidopsis Proteins / analysis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / isolation & purification; Bacteriorhodopsins / analysis; Bacteriorhodopsins / genetics; Bacteriorhodopsins / isolation & purification; Cetomacrogol / chemistry; Chromatography, Liquid / methods; Cytochromes c / analysis; Cytochromes c / genetics; Cytochromes c / isolation & purification; Membrane Proteins / analysis; Membrane Proteins / genetics; Membrane Proteins / isolation & purification; Methanol / chemistry; Molecular Sequence Data; Peptides / analysis; Peptides / chemistry; Peptides / genetics; Proteome / analysis; Solubility; Surface-Active Agents / chemistry; Tandem Mass Spectrometry / methods
TL;DR: Overall, the data show that methanol is a better alternative for identifying a wider range of membrane proteins than the nonionic detergent Brij-58. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2025) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.