Recent Works
search all worksSorted by most recent date added to the index first, which may not be the same as publication date order.
2025 article
Aberrant Gait Biomechanics Linked to Cartilage Changes After ACL Reconstruction in Those With High Body Mass Index
Lee, H., Buck, A. N., Armitano-Lago, C., Creighton, R. A., Kamath, G. M., Spang, J. T., … Pietrosimone, B. (2025, May 19). JOURNAL OF ORTHOPAEDIC RESEARCH, Vol. 5.
2023 journal article
Perimenopausal Effects of Estradiol on Anhedonia and Psychosis Study (PEEPs): study protocol for a neural and molecular mechanistic clinical trial
Trials, 24(1).
Contributors: M. Walsh *, K. Gibson*, M. Hynd *, T. Eisenlohr-Moul *, E. Walsh *, L. Schiff *, F. Jarskog*, D. Lalush n , G. Dichter *, C. Schiller *

2023 article
Striatal TSPO binding is associated with anhedonia severity and early life stress exposure in anhedonic patients with major depressive disorder
Phillips, R. D., Cummings, K., Dharanikota, A., Eisenlohr-Moul, T., Muscatell, K. A., Dichter, G. S., … Walsh, E. C. (2023, November). BRAIN BEHAVIOR AND IMMUNITY, Vol. 114, pp. 22–22.
2023 journal article
Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization
MOLECULAR BIOLOGY AND EVOLUTION, 40(9).

2023 journal article
Striatal dopamine in anhedonia: A simultaneous [11C]raclopride positron emission tomography and functional magnetic resonance imaging investigation
PSYCHIATRY RESEARCH-NEUROIMAGING, 333.

2023 article
Scalable Bayesian Divergence Time Estimation With Ratio Transformations
Ji, X., Fisher, A. A., Su, S., Thorne, J. L., Potter, B., Lemey, P., … Suchard, M. A. (2023, July 17). SYSTEMATIC BIOLOGY.

2023 article
Delayed cartilage oligomeric matrix protein response to loading is associated with femoral cartilage composition post-ACLR
Lisee, C., Evans-Pickett, A., Davis-Wilson, H., Munsch, A. E., Longobardi, L., Schwartz, T. A., … Pietrosimone, B. (2023, June 16). EUROPEAN JOURNAL OF APPLIED PHYSIOLOGY, Vol. 6.

2022 article
Striatal Dopamine Binding in Anhedonia: A Simultaneous [<sup>11</sup>C]Raclopride Positron Emission Tomography and Functional Magnetic Resonance Imaging Investigation
MedRxiv.
Contributors: R. Phillips *, E. Walsh *, N. Zürcher *, D. Lalush n , J. Kinard *, C. Tseng *, P. Cernasov *, D. Kan*
2022 journal article
Correlations between alignment gaps and nucleotide substitution or amino acid replacement
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(34).

2022 journal article
Worse Tibiofemoral Cartilage Composition Is Associated with Insufficient Gait Kinetics After ACL Reconstruction
MEDICINE & SCIENCE IN SPORTS & EXERCISE, 54(10), 1771–1781.
Contributors: A. Evans-Pickett *, C. Lisee *, W. Horton*, D. Lalush n , D. Nissman *, J. Blackburn *, J. Spang *, B. Pietrosimone *

2022 article
Convergent evolution of polyploid genomes from across the eukaryotic tree of life
Hao, Y., Fleming, J., Petterson, J., Lyons, E., Edger, P. P., Pires, J. C., … Conant, G. C. (2022, May 10). G3-GENES GENOMES GENETICS, Vol. 5.

2022 journal article
Exome sequencing of hepatocellular carcinoma in lemurs identifies potential cancer drivers A pilot study
EVOLUTION MEDICINE AND PUBLIC HEALTH, 10(1), 221–230.

2022 journal article
Loading during Midstance of Gait Is Associated with Magnetic Resonance Imaging of Cartilage Composition Following Anterior Cruciate Ligament Reconstruction
CARTILAGE, 13(1).
Contributors: E. Bjornsen *, T. Schwartz *, C. Lisee *, T. Blackburn *, D. Lalush n , D. Nissman *, J. Spang *, B. Pietrosimone *

2021 article
In Vivo Compositional Changes in the Articular Cartilage of the Patellofemoral Joint Following Anterior Cruciate Ligament Reconstruction
Boling, M. C., Dupell, M., Pfeiffer, S. J., Wallace, K., Lalush, D., Spang, J. T., … Pietrosimone, B. (2022, April 13). ARTHRITIS CARE & RESEARCH, Vol. 74.
Contributors: M. Boling *, M. Dupell*, S. Pfeiffer *, K. Wallace *, D. Lalush n , J. Spang *, D. Nissman *, B. Pietrosimone *

2021 article
Measuring Phylogenetic Information of Incomplete Sequence Data
Seo, T.-K., Gascuel, O., & Thorne, J. L. (2021, September 1). SYSTEMATIC BIOLOGY.

2021 journal article
Tibiofemoral articular cartilage composition differs based on serum biochemical profiles following anterior cruciate ligament reconstruction
OSTEOARTHRITIS AND CARTILAGE, 29(12), 1732–1740.
Contributors: C. Lisee *, J. Spang *, R. Loeser *, L. Longobardi *, D. Lalush n , D. Nissman *, T. Schwartz *, D. Hu *, B. Pietrosimone *

2021 journal article
Association of Jump-Landing Biomechanics With Tibiofemoral Articular Cartilage Composition 12 Months After ACL Reconstruction
ORTHOPAEDIC JOURNAL OF SPORTS MEDICINE, 9(7).
Contributors: S. Pfeiffer *, J. Spang *, D. Nissman *, D. Lalush n , K. Wallace *, M. Harkey *, L. Pietrosimone *, D. Padua *, T. Blackburn *, B. Pietrosimone n

2021 article
Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur
Campbell, C. R., Tiley, G. P., Poelstra, J. W., Hunnicutt, K. E., Larsen, P. A., Lee, H.-J., … Yoder, A. D. (2021, July 16). HEREDITY.

2021 journal article
A simultaneous [C-11]raclopride positron emission tomography and functional magnetic resonance imaging investigation of striatal dopamine binding in autism
TRANSLATIONAL PSYCHIATRY, 11(1).
Contributors: N. Zürcher *, E. Walsh *, R. Phillips *, P. Cernasov *, C. Tseng *, A. Dharanikota n, E. Smith *, Z. Li *

2020 article
A simultaneous [<sup>11</sup>C]raclopride positron emission tomography and functional magnetic resonance imaging investigation of striatal dopamine binding in autism
MedRxiv.
Contributors: N. Zürcher, E. Walsh *, R. Phillips *, P. Cernasov *, C. Tseng, A. Dharanikota n, E. Smith, Z. Li
2020 journal article
Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models
JOURNAL OF COMPUTATIONAL BIOLOGY, 27(3), 361–375.

2019 article
ASSOCIATIONS BETWEEN LATERAL COMPARTMENT T1RHO MRI INTER-LIMB RATIOS AND CHANGES IN WALKING GAIT KINEMATICS FOLLOWING ANTERIOR CRUCIATE LIGAMENT RECONSTRUCTION
Pfeiffer, S. J., Spang, J. T., Nissman, D., Lalush, D., Wallace, K., Harkey, M. S., … Pietrosimone, B. (2019, April). OSTEOARTHRITIS AND CARTILAGE, Vol. 27, pp. S136–S137.
2019 journal article
Improving Cancer Drug Discovery by Studying Cancer across the Tree of Life
MOLECULAR BIOLOGY AND EVOLUTION, 37(1), 11–17.

2018 journal article
Lesser Mechanical Loading During Walking Gait Associates with Worse Proteoglycan Density 6 months Following Anterior Cruciate Ligament Reconstruction
Medicine & Science in Sports & Exercise, 50, 40–41.
2018 journal article
3D Auto-Context-Based Locality Adaptive Multi-Modality GANs for PET Synthesis
IEEE TRANSACTIONS ON MEDICAL IMAGING, 38(6), 1328–1339.
