Statistical Genetics & Bioinformatics

Works Published in 2023

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Displaying all 5 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2023 article

Striatal TSPO binding is associated with anhedonia severity and early life stress exposure in anhedonic patients with major depressive disorder

Phillips, R. D., Cummings, K., Dharanikota, A., Eisenlohr-Moul, T., Muscatell, K. A., Dichter, G. S., … Walsh, E. C. (2023, November). BRAIN BEHAVIOR AND IMMUNITY, Vol. 114, pp. 22–22.

By: R. Phillips *, K. Cummings *, A. Dharanikota*, T. Eisenlohr-Moul *, K. Muscatell *, G. Dichter *, D. Lalush n, E. Walsh *

Source: Web Of Science
Added: September 23, 2024

2023 journal article

Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization

MOLECULAR BIOLOGY AND EVOLUTION, 40(9).

By: Y. Yang n, T. Xu n, G. Conant n , H. Kishino *, J. Thorne n & X. Ji*

author keywords: interlocus gene conversion; paralog homogenization; teleost genome duplication
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Source: Web Of Science
Added: April 1, 2024

2023 journal article

Striatal dopamine in anhedonia: A simultaneous [11C]raclopride positron emission tomography and functional magnetic resonance imaging investigation

PSYCHIATRY RESEARCH-NEUROIMAGING, 333.

By: R. Phillips *, E. Walsh *, N. Zurcher *, D. Lalush n, J. Kinard *, C. Tseng *, P. Cernasov *, D. Kan* ...

author keywords: Anhedonia; Dopamine; PET-MR; Reward; Mesolimbic; Self-reported stress
TL;DR: Analysis of linkages between striatal DA, reward circuitry functioning, anhedonia, and, in an exploratory fashion, self-reported stress, in a transdiagnostic anhedonic sample provides evidence for reduced striatalDA functioning during reward processing and blunted mesocorticolimbic network functional connectivity. (via Semantic Scholar)
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Source: Web Of Science
Added: February 12, 2024

2023 article

Scalable Bayesian Divergence Time Estimation With Ratio Transformations

Ji, X., Fisher, A. A., Su, S., Thorne, J. L., Potter, B., Lemey, P., … Suchard, M. A. (2023, July 17). SYSTEMATIC BIOLOGY.

By: X. Ji *, A. Fisher *, S. Su *, J. Thorne n, B. Potter *, P. Lemey *, G. Baele *, M. Suchard *

author keywords: Bayesian inference; divergence time estimation; effective sample size; Hamiltonian Monte Carlo; pathogens; phylogenetics; ratio transformation
TL;DR: A ratio transformation is explored that maps the original N-1 internal node heights into a space of one height parameter and N-2 ratio parameters and improves inference efficiency by at least 5-fold and makes it computationally feasible to incorporate mixed-effects molecular clock models for the Ebola virus example. (via Semantic Scholar)
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Source: Web Of Science
Added: September 5, 2023

2023 article

Delayed cartilage oligomeric matrix protein response to loading is associated with femoral cartilage composition post-ACLR

Lisee, C., Evans-Pickett, A., Davis-Wilson, H., Munsch, A. E., Longobardi, L., Schwartz, T. A., … Pietrosimone, B. (2023, June 16). EUROPEAN JOURNAL OF APPLIED PHYSIOLOGY.

By: C. Lisee *, A. Evans-Pickett *, H. Davis-Wilson *, A. Munsch*, L. Longobardi *, T. Schwartz *, D. Lalush n, J. Franz n, B. Pietrosimone *

author keywords: Biomarkers; Serum; Cartilage; COMP; MRI
TL;DR: Greater delayed sCOMP response to loading, a biomarker of cartilage breakdown, is associated with worse lateral femoral cartilage composition in the ACLR limb compared to the uninjured limb. (via Semantic Scholar)
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Source: Web Of Science
Added: June 26, 2023

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