Statistical Genetics & Bioinformatics

A deep-learning-based score to evaluate multiple sequence alignments

Serok, N., Polonsky, K., Ashkenazy, H., Mayrose, I., Thorne, J. L., & Pupko, T. (2026, February 5).

A practical introduction to wavelet analysis in electroretinography

Shwetar, Y. J., Lalush, D. S., Zhang, A. Y., McAnany, J. J., Jeffrey, B. G., & Haendel, M. A. (2025, December 15). Documenta Ophthalmologica.

Feasibility of deep learning-based cancer detection in ultrasound microvascular images

Bautista, K. J. B., Kierski, T. M., Newsome, I. G., Lee, H. R., Legant, W. R., Lalush, D. S., & Dayton, P. A. (2025, November 20). Ultrasonics.

Articular Cartilage Differences Between Those With High And Normal Body Mass Index Following Acl Injury

Lee, H., Zawel, M., Dausch, M. E., Lisee, C., Favoreto, N., Spang, J., … Pietrosimone, B. (2025, September 16). Medicine & Science in Sports & Exercise, Vol. 57, pp. 200–200.

A Practical Introduction to Wavelet Analysis in Electroretinography

Shwetar, Y., Lalush, D., McAnany, J., Jeffrey, B., & Haendel, M. (2025, July 27).

Aberrant Gait Biomechanics Linked to Cartilage Changes After ACL Reconstruction in Those With High Body Mass Index

Lee, H., Buck, A. N., Armitano‐Lago, C., Creighton, R. A., Kamath, G. M., Spang, J. T., … Pietrosimone, B. (2025, May 19). Journal of Orthopaedic Research®, Vol. 5.

Perimenopausal Effects of Estradiol on Anhedonia and Psychosis Study (PEEPs): Study Protocol for a Neural and Molecular Mechanistic Clinical Trial {1}

ResearchSquare.

Perimenopausal Effects of Estradiol on Anhedonia and Psychosis Study (PEEPs): study protocol for a neural and molecular mechanistic clinical trial

Walsh, M. J. M., Gibson, K., Hynd, M., Eisenlohr-Moul, T. A., Walsh, E. C., Schiff, L., … Schiller, C. E. (2023, February 28). Trials, Vol. 24.

Striatal TSPO binding is associated with anhedonia severity and early life stress exposure in anhedonic patients with major depressive disorder

Phillips, R. D., Cummings, K., Dharanikota, A., Eisenlohr-Moul, T., Muscatell, K. A., Dichter, G. S., … Walsh, E. C. (2023, November 1). Brain Behavior and Immunity, Vol. 114, pp. 22–22.

Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization

Yang, Y., Xu, T., Conant, G., Kishino, H., Thorne, J. L., & Ji, X. (2023, September 1). Molecular Biology and Evolution, Vol. 40.

Striatal dopamine in anhedonia: A simultaneous [11C]raclopride positron emission tomography and functional magnetic resonance imaging investigation

Phillips, R. D., Walsh, E. C., Zürcher, N. R., Lalush, D. S., Kinard, J. L., Tseng, C.-E., … Dichter, G. S. (2023, June 1). Psychiatry Research Neuroimaging, Vol. 333.

Scalable Bayesian Divergence Time Estimation With Ratio Transformations

Ji, X., Fisher, A. A., Su, S., Thorne, J. L., Potter, B., Lemey, P., … Suchard, M. A. (2023, July 17). Systematic Biology.

Delayed cartilage oligomeric matrix protein response to loading is associated with femoral cartilage composition post-ACLR

Lisee, C., Evans-Pickett, A., Davis-Wilson, H., Munsch, A. E., Longobardi, L., Schwartz, T. A., … Pietrosimone, B. (2023, June 16). European Journal of Applied Physiology, Vol. 6.

Striatal Dopamine Binding in Anhedonia: A Simultaneous [ ¹¹ C]Raclopride Positron Emission Tomography and Functional Magnetic Resonance Imaging Investigation

Phillips, R. D., Walsh, E. C., Zürcher, N. R., Lalush, D., Kinard, J., Tseng, C.-E., … Dichter, G. S. (2022, July 22). MedRxiv.

Correlations between alignment gaps and nucleotide substitution or amino acid replacement

Seo, T.-K., Redelings, B. D., & Thorne, J. L. (2022, August 16). Proceedings of the National Academy of Sciences.

Worse Tibiofemoral Cartilage Composition Is Associated with Insufficient Gait Kinetics After ACL Reconstruction

EVANS-PICKETT, A. L. Y. S. S. A., LISEE, C. A. R. O. L. I. N. E., HORTON, W. Z. A. C. H. A. R. Y., LALUSH, D. A. V. I. D., NISSMAN, D. A. N. I. E. L., BLACKBURN, J. T. R. O. Y., … PIETROSIMONE, B. R. I. A. N. (2022, June 11). Medicine & Science in Sports & Exercise, Vol. 54, pp. 1771–1781.

Convergent evolution of polyploid genomes from across the eukaryotic tree of life

Hao, Y., Fleming, J., Petterson, J., Lyons, E., Edger, P. P., Pires, J. C., … Conant, G. C. (2022, April 22). G3 Genes Genomes Genetics, Vol. 5.

Exome sequencing of hepatocellular carcinoma in lemurs identifies potential cancer drivers

Gunady, E. F., Ware, K. E., Plumlee, S. H., Devos, N., Corcoran, D., Prinz, J., … Somarelli, J. A. (2022, January 1). Evolution Medicine and Public Health, Vol. 1.

Loading during Midstance of Gait Is Associated with Magnetic Resonance Imaging of Cartilage Composition Following Anterior Cruciate Ligament Reconstruction

Bjornsen, E., Schwartz, T. A., Lisee, C., Blackburn, T., Lalush, D., Nissman, D., … Pietrosimone, B. (2022, January 1). Cartilage, Vol. 13.

In Vivo Compositional Changes in the Articular Cartilage of the Patellofemoral Joint Following Anterior Cruciate Ligament Reconstruction

Boling, M. C., Dupell, M., Pfeiffer, S. J., Wallace, K., Lalush, D., Spang, J. T., … Pietrosimone, B. (2021, January 18). Arthritis Care & Research, Vol. 74, pp. 1172–1178.

Measuring Phylogenetic Information of Incomplete Sequence Data

Seo, T.-K., Gascuel, O., & Thorne, J. L. (2021, September 1). Systematic Biology.

Tibiofemoral articular cartilage composition differs based on serum biochemical profiles following anterior cruciate ligament reconstruction

Lisee, C., Spang, J. T., Loeser, R., Longobardi, L., Lalush, D., Nissman, D., … Pietrosimone, B. (2021, September 15). Osteoarthritis and Cartilage, Vol. 29, pp. 1732–1740.

Association of Jump-Landing Biomechanics With Tibiofemoral Articular Cartilage Composition 12 Months After ACL Reconstruction

Pfeiffer, S. J., Spang, J. T., Nissman, D., Lalush, D., Wallace, K., Harkey, M. S., … Pietrosimone, B. (2021, July 1). Orthopaedic Journal of Sports Medicine, Vol. 9.

Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur

Campbell, C. R., Tiley, G. P., Poelstra, J. W., Hunnicutt, K. E., Larsen, P. A., Lee, H.-J., … Yoder, A. D. (2021, July 16). Heredity.

A simultaneous [11C]raclopride positron emission tomography and functional magnetic resonance imaging investigation of striatal dopamine binding in autism

Zürcher, N. R., Walsh, E. C., Phillips, R. D., Cernasov, P. M., Tseng, C.-E. J., Dharanikota, A., … Dichter, G. S. (2021, January 11). Translational Psychiatry, Vol. 11.