Works Published in 2011
Displaying works 81 - 100 of 306 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2011 journal article
Short communication: The complete genome sequence of Bifidobacterium animalis subspecies animalis ATCC 25527T and comparative analysis of growth in milk with B. animalis subspecies lactis DSM 10140T
Journal of Dairy Science, 94(12), 5864–5870.
author keywords: Bifidobacterium animalis ssp animalis; genome; growth in milk; clustered regularly interspaced short palindromic repeats (CRISPR)
MeSH headings : Animals; Base Sequence; Bifidobacterium / genetics; Bifidobacterium / growth & development; DNA, Intergenic / genetics; Genome, Bacterial / genetics; Inverted Repeat Sequences / genetics; Milk / microbiology; Molecular Sequence Data; Sequence Alignment; Sequence Analysis, DNA / methods; Sequence Homology, Nucleic Acid
www.journalofdairyscience.org (publisher PDF)
Source: ORCID
Added: January 2, 2020
2011 journal article
Evolution and classification of the CRISPR–Cas systems
Nature Reviews Microbiology, 9(6), 467–477.
MeSH headings : Adaptive Immunity / genetics; Archaea / genetics; Archaeal Proteins / classification; Archaeal Proteins / genetics; Bacterial Proteins / classification; Bacterial Proteins / genetics; Genome, Bacterial; Phylogeny; Repetitive Sequences, Nucleic Acid
TL;DR:
An updated analysis of the evolutionary relationships between CRISPR–Cas systems and Cas proteins is provided and a 'polythetic' classification that integrates the phylogenies of the most common cas genes, the sequence and organization of theCRISPR repeats and the architecture of the CRISpr–cas loci is proposed.
(via Semantic Scholar)
Source: ORCID
Added: January 2, 2020
2011 journal article
CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
Annual Review of Genetics, 45(1), 273–297.
author keywords: coevolution; immunity; interference; RNAi; bacteriophage
MeSH headings : Adaptive Immunity; Archaea / chemistry; Archaea / genetics; Archaea / immunology; Archaea / virology; Bacteria / chemistry; Bacteria / genetics; Bacteria / immunology; Bacteria / virology; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / immunology; Bacteriophages / genetics; Bacteriophages / immunology; CRISPR-Associated Proteins; Computational Biology; Endodeoxyribonucleases / chemistry; Endodeoxyribonucleases / genetics; Escherichia coli Proteins; Evolution, Molecular; Gene Expression Regulation, Archaeal; Gene Expression Regulation, Bacterial; Genetic Loci; Plasmids / immunology; RNA Interference; RNA Processing, Post-Transcriptional; RNA, Archaeal / chemistry; RNA, Archaeal / genetics; RNA, Archaeal / immunology; RNA, Bacterial / chemistry; RNA, Bacterial / genetics; RNA, Bacterial / immunology; RNA, Small Untranslated / chemistry; RNA, Small Untranslated / genetics; RNA, Small Untranslated / immunology; Transcription, Genetic; Virus Diseases / genetics; Virus Diseases / immunology; Virus Diseases / virology
TL;DR:
Exciting breakthroughs in understanding the mechanisms of the CRISPR-Cas system and its potential for biotechnological applications and understanding evolutionary dynamics are discussed.
(via Semantic Scholar)
Source: ORCID
Added: January 2, 2020
2011 journal article
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli
Nucleic Acids Research, 39(21), 9275–9282.
MeSH headings : Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Bacteriophage lambda / genetics; Base Sequence; Cloning, Molecular; DNA, Bacterial / chemistry; Escherichia coli / genetics; Escherichia coli / immunology; Escherichia coli / virology; Immunity; Molecular Sequence Data; Mutation; Nucleotide Motifs; Plasmids / genetics; Protein Structure, Tertiary; Repetitive Sequences, Nucleic Acid; Streptococcus thermophilus / genetics; Transformation, Bacterial
TL;DR:
The results show that active CRISPR/Cas systems can be transferred across distant genera and provide heterologous interference against invasive nucleic acids and can be leveraged to develop strains more robust against phage attack, and safer organisms less likely to uptake and disseminate plasmid-encoded undesirable genetic elements.
(via Semantic Scholar)
Source: ORCID
Added: January 2, 2020
2011 article
Lactic Acid Bacteria Defenses Against Phages
Stress Responses of Lactic Acid Bacteria, pp. 459–478.
TL;DR:
This chapter highlights the most broadly used phage-resistance systems in LAB, with an emphasis on the novel CRISPR/Cas system, which provides acquired adaptive immunity against phages by targeting viral nucleic acid in a sequence-specific manner.
(via Semantic Scholar)
Source: ORCID
Added: January 2, 2020
2011 article
Genus Lactobacillus
Lactic Acid Bacteria, pp. 77–91.
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: January 2, 2020
2011 journal article
Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus
Proceedings of the National Academy of Sciences, 108(43), 17785–17790.
author keywords: lactose permease; catabolite repression element
MeSH headings : DNA, Complementary / genetics; Gene Expression Regulation, Bacterial / physiology; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / metabolism; Membrane Transport Proteins / metabolism; Microarray Analysis; Oligonucleotide Array Sequence Analysis; Oligosaccharides / pharmacokinetics; Prebiotics; Reverse Transcriptase Polymerase Chain Reaction; beta-Galactosidase / genetics; beta-Galactosidase / metabolism
TL;DR:
P phenotypic confirmation of the functional LacS permease not only for the utilization of lactose and GOS but also lactitol is confirmed, suggesting a prominent role of LacS in the metabolism of a broad range of prebiotic β-galactosides, known to selectively modulate the beneficial gut microbiota.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: January 2, 2020
2011 journal article
The Potato Late Blight pathogen in Ireland, 1846: reconnecting Irish specimens with the Moore--Berkeley correspondence
Archives of Natural History, 38(2), 356–359.
Source: ORCID
Added: December 20, 2019
2011 conference paper
A LUCID Key to the common Phytophthora species
PHYTOPATHOLOGY, 101(6), S153–S153.
Event: AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
Source: ORCID
Added: December 20, 2019
2011 journal article
Key for identification of common Phytophthora species
CD-Rom Format. American Phytopathological Society.
Source: ORCID
Added: December 20, 2019
2011 conference paper
Deployment of rapid diagnostic tools for Phytophthora on horticultural crops in Central America
APS-IPPC Joint Meeting" Emerging Pests/Invasive Species. Digital Identification Tools: Their role in Biosecurity and Pest-Management", Honolulu, Hawaii, USA.
Source: ORCID
Added: December 20, 2019
2011 journal article
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
Molecular Ecology Resources, 11(6), 1002–1011.
Source: ORCID
Added: December 20, 2019
2011 journal article
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
Molecular Ecology Resources, 11(6), 1002–1011.
Contributors: G. Robideau*, A. De Cock*, M. Coffey*, H. Voglmayr *, H. Brouwer*, K. Bala*, D. Chitty*, N. Désaulniers*
author keywords: cytochrome c oxidase subunit I; DNA barcoding; internal transcribed spacer; oomycete; species identification
MeSH headings : Base Sequence; Cluster Analysis; DNA Barcoding, Taxonomic / methods; DNA Primers / genetics; DNA, Ribosomal Spacer / genetics; Electron Transport Complex IV / genetics; Models, Genetic; Molecular Sequence Data; Oomycetes / genetics; Sequence Analysis, DNA
TL;DR:
The results described in this paper indicate that COI sequencing and the dataset generated are a valuable addition to the currently available oomycete taxonomy resources, and that both COI, the default DNA barcode supported by GenBank, and ITS, the de facto barcode accepted by the oomyCete and mycology community, are acceptable and complementary DNA barcodes to be used for identification of oomy cetes.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2011 journal article
Towards a knowledge-based correction of iron chlorosis
Plant Physiology and Biochemistry, 49(5), 471–482.
Contributors: J. Abadía*
author keywords: Iron deficiency; Iron chlorosis; Iron fertilizers; Iron acquisition; Iron transport
MeSH headings : Chloroplasts / metabolism; Crops, Agricultural / metabolism; Ethylenediamines / metabolism; FMN Reductase / metabolism; Ferric Compounds / analysis; Ferric Compounds / metabolism; Fertilizers; Homeostasis; Iron / analysis; Iron / metabolism; Iron Chelating Agents / metabolism; Mitochondria / metabolism; Phloem / metabolism; Plant Diseases / prevention & control; Plant Leaves / metabolism; Plant Proteins / metabolism; Protein Transport; Prunus / metabolism; Soil / chemistry; Xylem / metabolism
TL;DR:
Agronomical Fe-fertilization practices should benefit from the basic knowledge on plant Fe homeostasis already available and should be considered as a long-term goal that can optimize fertilizer inputs, reduce grower's costs and minimize the environmental impact of fertilization.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: November 15, 2019
2011 journal article
Metabolite profile changes in xylem sap and leaf extracts of strategy I plants in response to iron deficiency and resupply
Frontiers Plant Science, 2(OCT), 66.
Contributors: R. Rellán-Álvarez *
TL;DR:
It is confirmed that Fe deficiency causes consistent changes both in the xylem sap and leaf metabolite profiles, and these data suggest that in low photosynthesis, C-starved Fe-deficient plants anaplerotic reactions involving amino acids can be crucial for short-term survival.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Sources: ORCID, NC State University Libraries, NC State University Libraries
Added: November 15, 2019
2011 journal article
Metabolic response in roots of Prunus rootstocks submitted to iron chlorosis
Journal of Plant Physiology, 168(5), 415–423.
Contributors: S. Jiménez*
author keywords: Iron; Metabolites; Phosphoenolpyruvate carboxylase; Prunus; Rootstock
MeSH headings : Chromatography, Liquid; Iron / metabolism; Magnetic Resonance Spectroscopy; Plant Roots / metabolism; Prunus / metabolism; Spectrometry, Mass, Electrospray Ionization
TL;DR:
The results suggest that the induction of this enzyme activity under iron deficiency, as previously shown in herbaceous plants, indicates the tolerance level of rootstocks to iron chlorosis.
(via Semantic Scholar)
Source: ORCID
Added: November 15, 2019
2011 journal article
Development of a New HPLC-ESI-TOFMS Method for the Determination of Low Molecular Mass Organic Acids in Plant Tissue Extracts
Journal of Agricultural and Food Chemistry, 59(13), 6864–6870.
Contributors: R. Rellán-Álvarez *
author keywords: carboxylates; mass spectrometry; organic acids; plant tissues
MeSH headings : Beta vulgaris / chemistry; Beverages / analysis; Carbon Isotopes; Carboxylic Acids / analysis; Carboxylic Acids / chemistry; Chromatography, High Pressure Liquid / methods; Citrus sinensis / chemistry; Fruit / chemistry; Solanum lycopersicum / chemistry; Molecular Weight; Plant Extracts / chemistry; Reproducibility of Results; Spectrometry, Mass, Electrospray Ionization / methods
TL;DR:
A liquid chromatography-electrospray ionization time-of-flight mass spectrometry method has been developed for the direct and simultaneous determination of 10 low molecular mass organic acids in different plant tissue extracts that may require specific extraction procedures and use of the corresponding (13)C-labeled organic acid as internal standards to improve accuracy.
(via Semantic Scholar)
Source: ORCID
Added: November 15, 2019
2011 journal article
Carboxylate metabolism in sugar beet plants grown with excess Zn
Journal of Plant Physiology, 168(7), 730–733.
Contributors: R. Sagardoy*
author keywords: Heavy metal toxicity; Carboxylate metabolism; Sugar beet; Zn toxicity
MeSH headings : Beta vulgaris / drug effects; Beta vulgaris / metabolism; Citrate (si)-Synthase / metabolism; Citric Acid / metabolism; Enzyme Activation / drug effects; Fumarate Hydratase / metabolism; Malates / metabolism; Plant Leaves / drug effects; Plant Leaves / metabolism; Zinc / toxicity
TL;DR:
A metabolic model of the carboxylate metabolism in sugar beet plants grown under Zn excess is proposed and shown increases in several enzymatic activities related to organic acid metabolism.
(via Semantic Scholar)
Source: ORCID
Added: November 15, 2019
2011 journal article
Xenobiotic-metabolizing gene variants, pesticide use, and the risk of prostate cancer
Pharmacogenetics and Genomics, 21(10), 615–623.
Contributors: S. Koutros *, G. Andreotti *, S. Berndt *, K. Hughes Barry *, J. Lubin*, J. Hoppin* , F. Kamel*, D. Sandler *
author keywords: interaction; pesticides; prostate cancer; single nucleotide polymorphism; xenobiotic-metabolizing enzymes
MeSH headings : Alleles; Epoxide Hydrolases / genetics; Genetic Association Studies; Glutamate-Cysteine Ligase / genetics; Humans; Logistic Models; Male; Occupational Exposure; Oxidative Stress / genetics; Peroxidase / genetics; Pesticides / adverse effects; Polymorphism, Single Nucleotide; Prostatic Neoplasms / genetics; Risk Factors; Thioredoxin Reductase 2 / genetics; Xenobiotics / metabolism
TL;DR:
The number of observed interactions in XMEs was comparable with the number expected by chance alone, and several pesticide–SNP interactions in oxidative stress and phase I/II enzyme genes and risk of prostate cancer were observed.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: September 13, 2019
2011 journal article
Mortality in the agricultural health study, 1993-2007
American Journal of Epidemiology, 173(1), 71–83.
Contributors: J. Waggoner*, G. Kullman, P. Henneberger, D. Umbach, A. Blair, M. Alavanja, F. Kamel, C. Lynch
author keywords: agriculture; healthy worker effect; mortality; neoplasms; pesticides; wounds and injuries
MeSH headings : Adult; Aged; Aged, 80 and over; Agricultural Workers' Diseases / mortality; Cause of Death / trends; Female; Humans; Iowa / epidemiology; Male; Middle Aged; North Carolina / epidemiology; Occupational Exposure / adverse effects; Pesticides / adverse effects; Retrospective Studies; Survival Rate / trends
TL;DR:
Using data from the Agricultural Health Study, a cohort of 89,656 pesticide applicators and their spouses in North Carolina and Iowa, standardized mortality ratios (SMRs) were computed comparing deaths from time of the enrollment through 2007 to state-specific rates.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(OpenAlex)
Source: ORCID
Added: September 13, 2019
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