Matthew R. Johnson
Works (11)
Updated: July 5th, 2023 15:58
2009 journal article
Temperature, not LuxS, mediates AI-2 formation in hydrothermal habitats
FEMS MICROBIOLOGY ECOLOGY, 68(2), 173–181.
author keywords: autoinducer-2; AI-2; hyperthermophiles; hydrothermal environments; Thermotoga maritima; Pyrococcus furiosus
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Carbon-Sulfur Lyases / genetics; Carbon-Sulfur Lyases / metabolism; Gas Chromatography-Mass Spectrometry; Gene Expression Regulation, Bacterial; Homoserine / analogs & derivatives; Homoserine / biosynthesis; Hot Temperature; Lactones; Pyrococcus furiosus / genetics; Pyrococcus furiosus / metabolism; Quorum Sensing; Thermotoga maritima / genetics; Thermotoga maritima / metabolism
academic.oup.com (publisher PDF)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2007 journal article
Role of the beta 1 subunit in the function and stability of the 20S proteasome in the hyperthermophilic archaeon Pyrococcus furiosus
JOURNAL OF BACTERIOLOGY, 189(2), 583–590.
MeSH headings : Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Archaeal Proteins / physiology; Calorimetry, Differential Scanning; Genome, Archaeal; Hot Temperature; Molecular Chaperones / genetics; Molecular Chaperones / metabolism; Proteasome Endopeptidase Complex / genetics; Proteasome Endopeptidase Complex / metabolism; Proteasome Endopeptidase Complex / physiology; Protein Subunits / genetics; Protein Subunits / metabolism; Protein Subunits / physiology; Pyrococcus furiosus / genetics; Pyrococcus furiosus / metabolism; Temperature; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2006 journal article
Colocation of genes encoding a tRNA-mRNA hybrid and a putative signaling peptide on complementary strands in the genome of the hyperthermophilic bacterium Thermotoga maritima
JOURNAL OF BACTERIOLOGY, 188(19), 6802–6807.
MeSH headings : Amino Acid Sequence; Anti-Bacterial Agents / pharmacology; Chloramphenicol / pharmacology; Coculture Techniques; DNA, Bacterial / genetics; Gene Expression; Gene Expression Regulation, Bacterial; Genes, Bacterial; Genome, Bacterial; Intracellular Signaling Peptides and Proteins / genetics; Methanococcus; RNA, Bacterial / analysis; RNA, Bacterial / genetics; RNA, Messenger / analysis; RNA, Messenger / genetics; Reverse Transcriptase Polymerase Chain Reaction; Sequence Alignment; Synteny; Thermotoga maritima / genetics; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2006 review
Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species
[Review of ]. FEMS MICROBIOLOGY REVIEWS, 30(6), 872–905.
author keywords: Thermotoga; hyperthermophiles; functional genomics
MeSH headings : Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Bacterial Proteins / physiology; Biotechnology; Carbohydrate Metabolism; Genetic Variation; Genome, Bacterial; Genomics; Gram-Negative Anaerobic Straight, Curved, and Helical Rods / genetics; Gram-Negative Anaerobic Straight, Curved, and Helical Rods / physiology; Hot Temperature; Iron / metabolism; Monosaccharides / biosynthesis; Phylogeny; Polysaccharides / biosynthesis; Signal Transduction; Sulfur / metabolism; Thermotoga maritima / genetics; Thermotoga maritima / isolation & purification; Thermotoga maritima / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2006 journal article
Transcriptional and biochemical analysis of starch metabolism in the hyperthermophilic archaeon Pyrococcus furiosus
JOURNAL OF BACTERIOLOGY, 188(6), 2115–2125.
MeSH headings : Archaeal Proteins / genetics; Bacterial Proteins / genetics; DNA, Archaeal / chemistry; DNA, Archaeal / genetics; Gene Expression Profiling; Gene Expression Regulation, Archaeal; Glucose / metabolism; Glucosephosphates / metabolism; Glucosyltransferases / genetics; Glycogen Debranching Enzyme System / genetics; Glycoside Hydrolases / genetics; Monosaccharide Transport Proteins / genetics; Oligonucleotide Array Sequence Analysis; Pyrococcus furiosus / genetics; Pyrococcus furiosus / metabolism; Sequence Analysis, DNA; Starch / metabolism; Substrate Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018
2005 journal article
An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima
JOURNAL OF BACTERIOLOGY, 187(21), 7267–7282.
MeSH headings : 5' Flanking Region / genetics; ATP-Binding Cassette Transporters / chemistry; ATP-Binding Cassette Transporters / genetics; Biological Evolution; Biological Transport / genetics; Carbohydrate Metabolism; Computational Biology; Gene Duplication; Gene Expression Profiling; Genes, Bacterial; Genes, Regulator; Genomics; Monosaccharide Transport Proteins / genetics; Nucleic Acid Conformation; Oligosaccharides / metabolism; Pentose Phosphate Pathway / genetics; Regulon / physiology; Rhamnose / metabolism; Thermotoga maritima / genetics; Thermotoga maritima / metabolism; Xylose / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2005 journal article
Genorne-wide transcriptional variation within and between steady states for continuous growth of the hyperthermophile Thermotoga maritima
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(9), 5572–5576.
Sources: Web Of Science, ORCID
Added: August 6, 2018
2005 journal article
Population density-dependent regulation of exopolysaccharide formation in the hyperthermophilic bacterium Thermotoga maritima
MOLECULAR MICROBIOLOGY, 55(3), 664–674.
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Culture Media; Ecosystem; Gene Expression Profiling; Gene Expression Regulation, Bacterial; Genome, Archaeal; Genome, Bacterial; Methanococcus / genetics; Methanococcus / growth & development; Methanococcus / metabolism; Oligonucleotide Array Sequence Analysis; Polysaccharides, Bacterial / metabolism; Signal Transduction; Temperature; Thermotoga maritima / growth & development; Thermotoga maritima / metabolism; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 article
Functional genomics-based studies of the microbial ecology of hyperthermophilic micro-organisms
Johnson, M. R., Montero, C. I., Conners, S. B., Shockley, K. R., Pysz, M. A., & Kelly, R. M. (2004, April). BIOCHEMICAL SOCIETY TRANSACTIONS, Vol. 32, pp. 188–192.
author keywords: ecology; functional qenomics; hyperthermophile; microarray; mixed culture
MeSH headings : Biofilms; DNA, Complementary / metabolism; Ecology; Gene Transfer Techniques; Genes, Archaeal; Genome; Genome, Archaeal; Microscopy, Fluorescence; Oligonucleotide Array Sequence Analysis; Phylogeny; RNA, Ribosomal, 16S / genetics; Temperature
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 review
Transcriptional analysis of biofilm formation processes in the anaerobic, hyperthermophilic bacterium Thermotoga maritima
[Review of ]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 70(10), 6098–6112.
MeSH headings : ATP-Binding Cassette Transporters / genetics; ATP-Binding Cassette Transporters / metabolism; Base Sequence; Biofilms / growth & development; Bioreactors; DNA, Bacterial / genetics; Gene Expression Profiling; Genes, Bacterial; Iron / metabolism; Models, Biological; Oligonucleotide Array Sequence Analysis; Oxidative Stress; Polysaccharides, Bacterial / genetics; Polysaccharides, Bacterial / metabolism; Sulfur / metabolism; Temperature; Thermotoga maritima / genetics; Thermotoga maritima / physiology; Thermotoga maritima / ultrastructure; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 journal article
Transcriptional analysis of dynamic heat-shock response by the hyperthermophilic bacterium Thermotoga maritima
EXTREMOPHILES, 8(3), 209–217.
author keywords: cDNA microarray; groESL; heat shock; hrcA; hyperthermophile; Thermotoga
MeSH headings : Base Sequence; DNA, Bacterial / genetics; Endopeptidases / genetics; Gene Expression; Genome, Bacterial; Heat-Shock Response / genetics; Hot Temperature; Oligonucleotide Array Sequence Analysis; SOS Response, Genetics; Sigma Factor / genetics; Thermotoga maritima / genetics; Thermotoga maritima / metabolism; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
