Erik James Soderblom

Works (7)

Updated: July 13th, 2023 21:15

2007 article

Characterization of a new family of protein kinases from Arabidopsis containing phosphoinositide 3/4-kinase and ubiquitin-like domains

Galvão, R. M., Kota, U., Soderblom, E. J., Goshe, M. B., & Boss, W. F. (2007, December 11). Biochemical Journal.

By: R. Galvão n, U. Kota n, E. Soderblom n, M. Goshe n & W. Boss n

author keywords: phosphoinositide kinase (PIK); phosphorylation; proteasome regulatory particle non-ATPase 10 subunit (proteasome RPN10 subunit); protein kinase; ubiquitin fusion degradation (UFD); ubiquitin-like domain (UBL domain)
MeSH headings : Adaptor Proteins, Signal Transducing / chemistry; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Catalysis; Class Ia Phosphatidylinositol 3-Kinase; Cloning, Molecular; DNA, Complementary / metabolism; Genetic Vectors; Humans; Phosphatidylinositol 3-Kinases / chemistry; Phosphatidylinositol 3-Kinases / metabolism; Phosphorylation; Phylogeny; Protein Kinases / chemistry; Protein Kinases / classification; Protein Structure, Tertiary; Recombinant Proteins / chemistry; Ubiquitin / chemistry; Ubiquitin / metabolism
topics (OpenAlex): Ubiquitin and proteasome pathways; Cellular transport and secretion; Cancer-related Molecular Pathways
TL;DR: In vitro analysis of AtPI4Kgamma4 indicates that it interacts directly with, and phosphorylates, two proteins involved in the ubiquitin-proteasome system, namely UFD1 (ubiquitin fusion degradation 1) and RPN10 (regulatory particle non-ATPase 10). (via Semantic Scholar)
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Source: Web Of Science
Added: August 6, 2018

2007 article

Location and Role of Free Cysteinyl Residues in the Sindbis Virus E1 and E2 Glycoproteins

Whitehurst, C. B., Soderblom, E. J., West, M. L., Hernandez, R., Goshe, M. B., & Brown, D. T. (2007, April 5). Journal of Virology.

By: C. Whitehurst  n, E. Soderblom n, M. West n, R. Hernandez n, M. Goshe n & D. Brown n

MeSH headings : Amino Acid Sequence; Animals; Capsid / chemistry; Cell Line; Chromatography, Liquid; Cricetinae; Cysteine / chemistry; Disulfides / chemistry; Iodoacetamide / pharmacology; Mass Spectrometry; Membrane Glycoproteins / chemistry; Molecular Sequence Data; Mutation; Protein Conformation; Viral Envelope Proteins / chemistry
topics (OpenAlex): Animal Virus Infections Studies; Viral gastroenteritis research and epidemiology; Bacteriophages and microbial interactions
TL;DR: Native virus particles alkylated with iodoacetamide demonstrated a 4-log decrease in viral infectivity, which suggests that the modification of free cysteinyl residues results in the loss of infectivity by destabilizing the virus particle or that a rearrangement of disulfide bonds, which is required forinfectivity, is blocked by the modification. (via Semantic Scholar)
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Source: Web Of Science
Added: August 6, 2018

2007 article

Tandem mass spectrometry acquisition approaches to enhance identification of protein‐protein interactions using low‐energy collision‐induced dissociative chemical crosslinking reagents

Soderblom, E. J., Bobay, B. G., Cavanagh, J., & Goshe, M. B. (2007, September 28). Rapid Communications in Mass Spectrometry.

By: E. Soderblom n, B. Bobay n, J. Cavanagh n & M. Goshe n

MeSH headings : Amino Acid Sequence; Bacillus subtilis / chemistry; Bacillus subtilis / metabolism; Bacterial Proteins / chemistry; Cross-Linking Reagents / chemistry; DNA-Binding Proteins / chemistry; Molecular Sequence Data; Peptide Mapping; Peptides / chemistry; Protein Conformation; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry / methods; Transcription Factors / chemistry
topics (OpenAlex): Mass Spectrometry Techniques and Applications; Advanced Proteomics Techniques and Applications; RNA and protein synthesis mechanisms
TL;DR: The ability to segregate intrapeptide and interpeptide crosslinks using ITCID represents the first step towards high-throughput analysis of protein-protein cross links using the CID-CXL reagents. (via Semantic Scholar)
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7. Affordable and Clean Energy (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2006 journal article

A mass spectrometry-based proteomic approach to study Marek's Disease Virus gene expression

Journal of Virological Methods, 135(1), 66–75.

By: H. Liu n, E. Soderblom n & M. Goshe n

author keywords: proteomics; gene expression; liquid chromatography; mass spectrometry; Marek's Disease Virus
MeSH headings : Animals; Cells, Cultured; Chick Embryo; Chromatography, Ion Exchange; Computational Biology; Databases, Protein; Fibroblasts / virology; Gas Chromatography-Mass Spectrometry; Gene Expression Profiling / methods; Herpesvirus 2, Gallid / genetics; Proteome / analysis; Proteome / isolation & purification; Proteomics / methods; Trypsin / metabolism; Viral Proteins / analysis; Viral Proteins / isolation & purification
topics (OpenAlex): Herpesvirus Infections and Treatments; Cytomegalovirus and herpesvirus research; Yersinia bacterium, plague, ectoparasites research
TL;DR: A mass spectrometry-based strategy was developed to identify viral proteins and to qualitatively examine their abundance in lytically infected chicken embryo fibroblast (CEF) cells and it is anticipated that this approach will be a viable method for determining how viral and host proteome changes occurring in Marek's Disease pathogenesis regulate the switch between the lytic and latent phases of the MDV life cycle. (via Semantic Scholar)
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Sources: Web Of Science, Crossref
Added: August 6, 2018

2006 article

Collision-Induced Dissociative Chemical Cross-Linking Reagents and Methodology:  Applications to Protein Structural Characterization Using Tandem Mass Spectrometry Analysis

Soderblom, E. J., & Goshe, M. B. (2006, October 28). Analytical Chemistry.

By: E. Soderblom n & M. Goshe n

MeSH headings : Amino Acid Sequence; Animals; Aspartic Acid / chemistry; Cross-Linking Reagents / chemistry; Glutathione Transferase / chemistry; Glutathione Transferase / genetics; Glutathione Transferase / metabolism; Models, Molecular; Molecular Sequence Data; Proline / chemistry; Protein Structure, Tertiary; Recombinant Fusion Proteins / chemistry; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Schistosoma japonicum / genetics; Schistosoma japonicum / metabolism; Serum Albumin, Bovine / chemistry; Serum Albumin, Bovine / genetics; Serum Albumin, Bovine / metabolism; Tandem Mass Spectrometry / methods
topics (OpenAlex): Mass Spectrometry Techniques and Applications; Advanced Proteomics Techniques and Applications; Protein Structure and Dynamics
TL;DR: Common acquisition approaches such as data-dependent acquisition experiments using ion trap mass spectrometers and product ion spectral analysis using SEQUEST were shown to be compatible with the CID-CXL-MS/MS reagents, obviating the requirement for high resolution and high mass accuracy measurements to identify both intra- and interpeptide cross-links. (via Semantic Scholar)
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Source: Web Of Science
Added: August 6, 2018

2005 article

Identification and Functional Analysis of in Vivo Phosphorylation Sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 Receptor Kinase

Wang, X., Goshe, M. B., Soderblom, E. J., Phinney, B. S., Kuchar, J. A., Li, J., … Clouse, S. D. (2005, May 13). The Plant Cell.

By: X. Wang n, M. Goshe n, E. Soderblom n, B. Phinney *, J. Kuchar*, J. Li *, T. Asami *, S. Yoshida *, S. Huber*, S. Clouse n

MeSH headings : Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Binding Sites / physiology; Cell Membrane / metabolism; Conserved Sequence / genetics; Mutation / genetics; Phosphorylation; Protein Kinases / chemistry; Protein Kinases / genetics; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Protein Structure, Tertiary / physiology; Serine / chemistry; Serine / metabolism; Signal Transduction / physiology; Threonine / chemistry; Threonine / metabolism
topics (OpenAlex): Plant Reproductive Biology; Plant Molecular Biology Research; Polysaccharides and Plant Cell Walls
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2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Novel protein purification system utilizing an N-terminal fusion protein and a caspase-3 cleavable linker

Protein Expression and Purification, 47(1), 311–318.

By: B. Feeney n, E. Soderblom n, M. Goshe n & A. Clark n

author keywords: caspase-3; fusion protein; protein expression; proteolysis
MeSH headings : Amino Acid Sequence; Caspase 3 / metabolism; Caspase 3 / physiology; Glutathione Transferase / genetics; Histidine / genetics; Hydrolysis; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / genetics; Peptide Fragments / metabolism; Protein Structure, Tertiary / genetics; Proteins / genetics; Proteins / isolation & purification; Proteins / metabolism; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / isolation & purification; Recombinant Fusion Proteins / metabolism
topics (OpenAlex): Biochemical and Molecular Research; Virus-based gene therapy research; Monoclonal and Polyclonal Antibodies Research
TL;DR: A glutathione S-transferase-fusion protein vector with a caspase-3 consensus cleavage sequence located between the N-terminal GST tag and a target protein is designed and it is shown that the enzyme efficiently cleaves the fusion protein without leaving excess amino acids on the target protein. (via Semantic Scholar)
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Sources: Web Of Science, Crossref
Added: August 6, 2018

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