Works (11)

Updated: July 5th, 2023 15:54

2015 journal article

A mutant ('lab strain') of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology

EXTREMOPHILES, 19(2), 269–281.

By: D. Lewis n, J. Notey n, S. Chandrayan*, A. Loder n, G. Lipscomb*, M. Adams*, R. Kelly n

author keywords: Pyrococcus furiosus; Hyperthermophile; Archaeon; Growth physiology; Flagella
TL;DR: It is indicated that flagella play a key role, beyond motility, in the growth physiology of P. furiosus and, unlike the WT, showed minimal evidence of exopolysaccharide-based cell aggregation in post-exponential phase. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2011 journal article

Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725

NUCLEIC ACIDS RESEARCH, 39(8), 3240–3254.

By: P. Dam n, I. Kataeva n, S. Yang n, F. Zhou n, Y. Yin n, W. Chou n, F. Poole n, J. Westpheling n ...

MeSH headings : Bacterial Adhesion; Bacterial Proteins / genetics; Biomass; Carbohydrate Metabolism / genetics; Gene Expression Profiling; Genes, Bacterial; Genome, Bacterial; Genomics; Gram-Positive Bacteria / genetics; Gram-Positive Bacteria / metabolism; Gram-Positive Bacteria / ultrastructure; Plants / metabolism; Proteomics
TL;DR: The high duplication of CAZy domains coupled with the ability to acquire foreign genes by LGT may have allowed the bacterium to rapidly adapt to changing plant biomass-rich environments. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 journal article

Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 398(1), 377–389.

By: D. Muddiman n, G. Andrews n, D. Lewis n, J. Notey n & R. Kelly n

author keywords: Secretome; Caldicellulosiruptor saccharolyticus; GeLC-MS2; Thermophile; Sample preparation
MeSH headings : Bacterial Proteins / analysis; Bacterial Proteins / metabolism; Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Extracellular Space / metabolism; Gram-Positive Bacteria / metabolism; Proteome / analysis; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Temperature
TL;DR: In an effort to define the extracellular proteome of the extreme thermophilic bacterium Caldicellulosiruptor saccharolyticus, several techniques were considered regarding sample processing to achieve the most in-depth analysis of secreted proteins. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2 (vol 398, pg 377, 2010)

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, October). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 398, pp. 1837–1837.

By: G. Andrews n, D. Lewis n, J. Notey n, R. Kelly n & D. Muddiman*

Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 journal article

Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 398(1), 391–404.

By: D. Muddiman n, G. Andrews n, D. Lewis n, J. Notey n & R. Kelly n

author keywords: Thermotoga maritima; Caldicellulosiruptor saccharolyticus; GeLC-MS2; Co-cultivation; Intracellular proteome; Spectral counting
MeSH headings : Bacterial Proteins / analysis; Bacterial Proteins / metabolism; Chemotaxis; Chromatography, Liquid; Coculture Techniques; Electrophoresis, Polyacrylamide Gel; Fourier Analysis; Gram-Positive Bacteria / growth & development; Gram-Positive Bacteria / metabolism; Intracellular Space / metabolism; Proteome / analysis; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectrum Analysis / statistics & numerical data; Temperature; Thermotoga maritima / growth & development; Thermotoga maritima / metabolism
TL;DR: Altering in growth conditions of these bacterial thermophilic microorganisms offer a glimpse into the intricacy of microbial behavior and interaction as well as insight into microbial interaction and behavior. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting (vol 398, pg 391, 2010)

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, October). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 398, pp. 1839–1839.

By: G. Andrews n, D. Lewis n, J. Notey n, R. Kelly n & D. Muddiman n

Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 journal article

Phylogenetic, Microbiological, and Glycoside Hydrolase Diversities within the Extremely Thermophilic, Plant Biomass-Degrading Genus Caldicellulosiruptor

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(24), 8084–8092.

By: S. Blumer-Schuette n, D. Lewis n & R. Kelly n

MeSH headings : Bacterial Proteins / analysis; Biomass; Carbohydrate Metabolism; Cluster Analysis; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; DNA, Ribosomal / chemistry; DNA, Ribosomal / genetics; Electrophoresis, Gel, Two-Dimensional; Genetic Variation; Glycoside Hydrolases / genetics; Gram-Positive Bacteria / classification; Gram-Positive Bacteria / genetics; Gram-Positive Bacteria / growth & development; Gram-Positive Bacteria / metabolism; Hot Temperature; Microarray Analysis; Molecular Sequence Data; Nucleic Acid Hybridization; Phylogeny; Plants / microbiology; Proteome / analysis; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA
TL;DR: Overall, the genus Caldicellulosiruptor appears to contain more genomic and physiological diversity than previously reported, and this argues for continued efforts to isolate new members from high-temperature terrestrial biotopes. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 journal article

Hydrogenomics of the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74(21), 6720–6729.

By: H. Werken*, M. Verhaart*, A. VanFossen n, K. Willquist*, D. Lewis n, J. Nichols n, H. Goorissen*, E. Mongodin* ...

MeSH headings : Bacterial Proteins / genetics; Carbohydrate Metabolism / genetics; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Enzymes / genetics; Gene Expression Profiling; Genome, Bacterial; Gram-Positive Bacteria / genetics; Metabolic Networks and Pathways / genetics; Molecular Sequence Data; Sequence Analysis, DNA
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 journal article

Polysaccharide Degradation and Synthesis by Extremely Thermophilic Anaerobes

Annals of the New York Academy of Sciences, 1125(1), 322–337.

By: A. VanFossen n, D. Lewis n, J. Nichols n & R. Kelly n

author keywords: Pyrococcus furiosus; Thermotoga maritima; Caldicellulosiruptor saccharolyticus; extremely thermophilic organism; thermophile; glycoside hydrolases; exopolysaccharides
MeSH headings : Anaerobiosis; Archaeal Proteins / metabolism; Bacterial Proteins / metabolism; Biological Transport; Carbohydrate Metabolism; Glycoside Hydrolases / metabolism; Hot Temperature; Polysaccharides / biosynthesis; Polysaccharides / metabolism; Pyrococcus furiosus / growth & development; Pyrococcus furiosus / metabolism; Thermotoga maritima / growth & development; Thermotoga maritima / metabolism
TL;DR: The genomes of three model extreme thermophiles and two bacteria, Thermotoga maritima and Caldicellulosiruptor saccharolyticus,encode numerous carbohydrate‐active enzymes, many of which have been characterized biochemically in their native or recombinant forms. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2007 journal article

Impact of substrate glycoside linkage. and elemental sulfur on bioenergetics, of and hydrogen production by the hyperthermophilic Archaeon Pyrococcus furiosus

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 73(21), 6842–6853.

By: C. Chou n, K. Shockley n, S. Conners n, D. Lewis n, D. Comfort n, M. Adams*, R. Kelly n

MeSH headings : Archaea; Chemical Phenomena; Chemistry; Gene Expression Regulation, Archaeal; Genome, Archaeal; Glycosides / metabolism; Hot Temperature; Hydrogen / metabolism; Oligonucleotide Array Sequence Analysis; Open Reading Frames; Pyrococcus furiosus / enzymology; Pyrococcus furiosus / genetics; Pyrococcus furiosus / physiology; Sulfur / metabolism
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

journal article

Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature

Kataeva, I., Foston, M. B., Yang, S. J., Pattathil, S., Biswal, A. K., Poole, F. L., … York, W. S. Energy & Environmental Science, 6(7), 2186–2195.

By: I. Kataeva, M. Foston, S. Yang, S. Pattathil, A. Biswal, F. Poole, M. Basen, A. Rhaesa ...

Source: NC State University Libraries
Added: August 6, 2018

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