Derrick L. Lewis

Works (11)

Updated: April 23rd, 2025 19:19

2014 article

A mutant (‘lab strain’) of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology

Lewis, D. L., Notey, J. S., Chandrayan, S. K., Loder, A. J., Lipscomb, G. L., Adams, M. W. W., & Kelly, R. M. (2014, December 3). Extremophiles, Vol. 19, pp. 269–281.

By: D. Lewis n, J. Notey n, S. Chandrayan *, A. Loder n, G. Lipscomb*, M. Adams *, R. Kelly n 

author keywords: Pyrococcus furiosus; Hyperthermophile; Archaeon; Growth physiology; Flagella
MeSH headings : Cell Proliferation; Flagella / genetics; Flagella / ultrastructure; Genes, Bacterial; Mutation; Phenotype; Pyrococcus furiosus / genetics; Pyrococcus furiosus / growth & development; Pyrococcus furiosus / metabolism; Pyrococcus furiosus / physiology; Transcriptome
topics (OpenAlex): Photosynthetic Processes and Mechanisms; Bacterial Genetics and Biotechnology; Protist diversity and phylogeny
TL;DR: It is indicated that flagella play a key role, beyond motility, in the growth physiology of P. furiosus and, unlike the WT, showed minimal evidence of exopolysaccharide-based cell aggregation in post-exponential phase. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2011 article

Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725

Dam, P., Kataeva, I., Yang, S.-J., Zhou, F., Yin, Y., Chou, W., … Adams, M. W. W. (2011, January 10). Nucleic Acids Research, Vol. 39, pp. 3240–3254.

By: P. Dam n, I. Kataeva n, S. Yang n, F. Zhou  n, Y. Yin  n, W. Chou  n, F. Poole n, J. Westpheling  n ...

MeSH headings : Bacterial Adhesion; Bacterial Proteins / genetics; Biomass; Carbohydrate Metabolism / genetics; Gene Expression Profiling; Genes, Bacterial; Genome, Bacterial; Genomics; Gram-Positive Bacteria / genetics; Gram-Positive Bacteria / metabolism; Gram-Positive Bacteria / ultrastructure; Plants / metabolism; Proteomics
topics (OpenAlex): Biofuel production and bioconversion; Enzyme Production and Characterization; Genomics and Phylogenetic Studies
TL;DR: The high duplication of CAZy domains coupled with the ability to acquire foreign genes by LGT may have allowed the bacterium to rapidly adapt to changing plant biomass-rich environments. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Erratum to: Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, August 14). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1837–1837.

By: G. Andrews n, D. Lewis n, J. Notey n, R. Kelly n  & D. Muddiman n 

topics (OpenAlex): Advanced Proteomics Techniques and Applications; S100 Proteins and Annexins; Enzyme Structure and Function
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Erratum to: Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, August 12). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1839–1839.

By: G. Andrews n, D. Lewis n, J. Notey n, R. Kelly n  & D. Muddiman n 

topics (OpenAlex): Advanced Proteomics Techniques and Applications; Machine Learning in Bioinformatics; Genomics and Phylogenetic Studies
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2. Zero Hunger (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2

Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010, July 10). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 377–389.

By: D. Muddiman n , G. Andrews n, D. Lewis n, J. Notey n & R. Kelly n 

author keywords: Secretome; Caldicellulosiruptor saccharolyticus; GeLC-MS2; Thermophile; Sample preparation
MeSH headings : Bacterial Proteins / analysis; Bacterial Proteins / metabolism; Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Extracellular Space / metabolism; Gram-Positive Bacteria / metabolism; Proteome / analysis; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Temperature
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Enzyme Structure and Function; Protein Structure and Dynamics
TL;DR: In an effort to define the extracellular proteome of the extreme thermophilic bacterium Caldicellulosiruptor saccharolyticus, several techniques were considered regarding sample processing to achieve the most in-depth analysis of secreted proteins. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting

Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010, June 26). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 391–404.

By: D. Muddiman n , G. Andrews n, D. Lewis n, J. Notey n & R. Kelly n 

author keywords: Thermotoga maritima; Caldicellulosiruptor saccharolyticus; GeLC-MS2; Co-cultivation; Intracellular proteome; Spectral counting
MeSH headings : Bacterial Proteins / analysis; Bacterial Proteins / metabolism; Chemotaxis; Chromatography, Liquid; Coculture Techniques; Electrophoresis, Polyacrylamide Gel; Fourier Analysis; Gram-Positive Bacteria / growth & development; Gram-Positive Bacteria / metabolism; Intracellular Space / metabolism; Proteome / analysis; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectrum Analysis / statistics & numerical data; Temperature; Thermotoga maritima / growth & development; Thermotoga maritima / metabolism
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Bacteriophages and microbial interactions; Genomics and Phylogenetic Studies
TL;DR: Altering in growth conditions of these bacterial thermophilic microorganisms offer a glimpse into the intricacy of microbial behavior and interaction as well as insight into microbial interaction and behavior. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Phylogenetic, Microbiological, and Glycoside Hydrolase Diversities within the Extremely Thermophilic, Plant Biomass-Degrading Genus Caldicellulosiruptor

Blumer-Schuette, S. E., Lewis, D. L., & Kelly, R. M. (2010, October 23). Applied and Environmental Microbiology, Vol. 76, pp. 8084–8092.

By: S. Blumer-Schuette n, D. Lewis n & R. Kelly n 

MeSH headings : Bacterial Proteins / analysis; Biomass; Carbohydrate Metabolism; Cluster Analysis; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; DNA, Ribosomal / chemistry; DNA, Ribosomal / genetics; Electrophoresis, Gel, Two-Dimensional; Genetic Variation; Glycoside Hydrolases / genetics; Gram-Positive Bacteria / classification; Gram-Positive Bacteria / genetics; Gram-Positive Bacteria / growth & development; Gram-Positive Bacteria / metabolism; Hot Temperature; Microarray Analysis; Molecular Sequence Data; Nucleic Acid Hybridization; Phylogeny; Plants / microbiology; Proteome / analysis; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA
topics (OpenAlex): Biofuel production and bioconversion; Enzyme Production and Characterization; Microbial Metabolic Engineering and Bioproduction
TL;DR: Overall, the genus Caldicellulosiruptor appears to contain more genomic and physiological diversity than previously reported, and this argues for continued efforts to isolate new members from high-temperature terrestrial biotopes. (via Semantic Scholar)
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15. Life on Land (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 article

Hydrogenomics of the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus

Werken, H. J. G., Verhaart, M. R. A., VanFossen, A. L., Willquist, K., Lewis, D. L., Nichols, J. D., … Kengen, S. W. M. (2008, September 6). Applied and Environmental Microbiology, Vol. 74, pp. 6720–6729.

By: H. Werken *, M. Verhaart*, A. VanFossen n, K. Willquist*, D. Lewis n, J. Nichols n, H. Goorissen*, E. Mongodin * ...

MeSH headings : Bacterial Proteins / genetics; Carbohydrate Metabolism / genetics; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Enzymes / genetics; Gene Expression Profiling; Genome, Bacterial; Gram-Positive Bacteria / genetics; Metabolic Networks and Pathways / genetics; Molecular Sequence Data; Sequence Analysis, DNA
topics (OpenAlex): Biofuel production and bioconversion; Microbial Metabolic Engineering and Bioproduction; Anaerobic Digestion and Biogas Production
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 journal article

Polysaccharide Degradation and Synthesis by Extremely Thermophilic Anaerobes

Annals of the New York Academy of Sciences, 1125(1), 322–337.

By: A. VanFossen n, D. Lewis n, J. Nichols n & R. Kelly n 

author keywords: Pyrococcus furiosus; Thermotoga maritima; Caldicellulosiruptor saccharolyticus; extremely thermophilic organism; thermophile; glycoside hydrolases; exopolysaccharides
MeSH headings : Anaerobiosis; Archaeal Proteins / metabolism; Bacterial Proteins / metabolism; Biological Transport; Carbohydrate Metabolism; Glycoside Hydrolases / metabolism; Hot Temperature; Polysaccharides / biosynthesis; Polysaccharides / metabolism; Pyrococcus furiosus / growth & development; Pyrococcus furiosus / metabolism; Thermotoga maritima / growth & development; Thermotoga maritima / metabolism
topics (OpenAlex): Enzyme Production and Characterization; Genomics and Phylogenetic Studies; Microbial Community Ecology and Physiology
TL;DR: The genomes of three model extreme thermophiles and two bacteria, Thermotoga maritima and Caldicellulosiruptor saccharolyticus,encode numerous carbohydrate‐active enzymes, many of which have been characterized biochemically in their native or recombinant forms. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2007 article

Impact of Substrate Glycoside Linkage and Elemental Sulfur on Bioenergetics of and Hydrogen Production by the Hyperthermophilic Archaeon Pyrococcus furiosus

Chou, C.-J., Shockley, K. R., Conners, S. B., Lewis, D. L., Comfort, D. A., Adams, M. W. W., & Kelly, R. M. (2007, September 8). Applied and Environmental Microbiology, Vol. 73, pp. 6842–6853.

By: C. Chou n, K. Shockley n, S. Conners n, D. Lewis n, D. Comfort n, M. Adams  n, R. Kelly n 

MeSH headings : Archaea; Chemical Phenomena; Chemistry; Gene Expression Regulation, Archaeal; Genome, Archaeal; Glycosides / metabolism; Hot Temperature; Hydrogen / metabolism; Oligonucleotide Array Sequence Analysis; Open Reading Frames; Pyrococcus furiosus / enzymology; Pyrococcus furiosus / genetics; Pyrococcus furiosus / physiology; Sulfur / metabolism
topics (OpenAlex): Microbial Metabolic Engineering and Bioproduction; Biofuel production and bioconversion; Anaerobic Digestion and Biogas Production
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

journal article

Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature

Kataeva, I., Foston, M. B., Yang, S. J., Pattathil, S., Biswal, A. K., Poole, F. L., … York, W. S. Energy & Environmental Science, 6(7), 2186–2195.

By: I. Kataeva, M. Foston, S. Yang, S. Pattathil, A. Biswal, F. Poole, M. Basen, A. Rhaesa ...

Source: NC State University Libraries
Added: August 6, 2018

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