High-dimensional Integration of Biological Systems

Works Published in 2011

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Displaying all 6 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2011 journal article

Nuclear Factor κ-Light Chain-Enhancer of Activated B Cells is Activated by Radiotherapy and is Prognostic for Overall Survival in Patients With Rectal Cancer Treated With Preoperative Fluorouracil-Based Chemoradiotheraphy

International Journal of Radiation Oncology*Biology*Physics, 80(3), 705–711.

By: B. O'Neil*, W. Funkhouser*, B. Calvo*, M. Meyers*, H. Kim*, R. Goldberg*, S. Bernard*, L. Caskey* ...

author keywords: Chemoradiotherapy; NF-kappa B; rectal cancer; prognostic markers; inducible resistance genes; TRAF1; Bcl-2; cIAP-2; interleukin 8
MeSH headings : Adult; Aged; Aged, 80 and over; Combined Modality Therapy / methods; Female; Genes, bcl-2 / genetics; Humans; Inhibitor of Apoptosis Proteins / genetics; Interleukin-8 / genetics; Male; Middle Aged; NF-kappa B / metabolism; Neoplasm Proteins / metabolism; Prognosis; Prospective Studies; Radiation Tolerance / genetics; Rectal Neoplasms / drug therapy; Rectal Neoplasms / genetics; Rectal Neoplasms / metabolism; Rectal Neoplasms / mortality; Rectal Neoplasms / radiotherapy; Retrospective Studies; TNF Receptor-Associated Factor 1 / genetics; Treatment Outcome
TL;DR: NF-κB might play an important role in tumor metastasis but not to the resistance to chemoradiotherapy, and nuclear expression at baseline in rectal cancer was prognostic for overall survival but not predictive of the response to RT. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: Crossref
Added: January 4, 2021

2011 journal article

Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2

Nature Genetics, 43(6), 539–546.

By: F. Wright*, L. Strug*, V. Doshi*, C. Commander*, S. Blackman*, L. Sun*, Y. Berthiaume*, D. Cutler* ...

MeSH headings : Adolescent; Adult; Child; Chromosomes, Human, Pair 11; Chromosomes, Human, Pair 20; Cystic Fibrosis / genetics; Female; Genetic Linkage; Genome-Wide Association Study; Humans; Lung Diseases / genetics; Male; Phenotype; Quantitative Trait Loci
TL;DR: The authors' findings provide insight into the causes of variation in lung disease severity in cystic fibrosis and suggest new therapeutic targets for this life-limiting disorder. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: Crossref
Added: August 28, 2020

2011 journal article

MicroRNA expression in the livers of inbred mice

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, 714(1-2), 126–133.

author keywords: MicroRNA; Liver; Mouse; Gene expression
MeSH headings : Animals; Gene Expression; Liver / metabolism; Mice; Mice, Inbred Strains / genetics; MicroRNAs / metabolism; Polymorphism, Single Nucleotide
TL;DR: The stability of mouse liver miRNA expression in a genetically diverse population suggests that treatment-induced disruptions in liver mi RNA expression may indicate an important mechanism for the disturbance of normal liver function, and may prove to be a useful genetic background-independent biomarker of toxicant effect. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2011 journal article

A novel lung disease phenotype adjusted for mortality attrition for cystic fibrosis Genetic modifier studies

Pediatric Pulmonology, 46(9), 857–869.

By: C. Taylor*, C. Commander*, J. Collaco*, L. Strug*, W. Li*, F. Wright*, A. Webel*, R. Pace* ...

author keywords: forced expiratory volume; age effects; severity of illness index
MeSH headings : Adolescent; Child; Chronic Disease; Clinical Trials as Topic; Cystic Fibrosis / genetics; Cystic Fibrosis / mortality; Female; Humans; Male; Multicenter Studies as Topic; Phenotype; Respiratory Function Tests; Severity of Illness Index; Survival Analysis
TL;DR: Genetic studies of lung disease in cystic fibrosis are hampered by the lack of a severity measure that accounts for chronic disease progression and mortality attrition and combining analyses across studies requires common phenotypes that are robust to study design and patient ascertainment. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: Crossref
Added: August 28, 2020

2011 journal article

A powerful and flexible approach to the analysis of RNA sequence count data

Bioinformatics, 27(19), 2672–2678.

By: Y. Zhou, K. Xia & F. Wright

Source: ORCID
Added: October 7, 2019

2011 journal article

seeQTL: a searchable database for human eQTLs

Bioinformatics, 28(3), 451–452.

By: K. Xia, A. Shabalin, S. Huang, V. Madar, Y. Zhou, W. Wang, F. Zou, W. Sun, P. Sullivan, F. Wright

Source: ORCID
Added: October 7, 2019

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