Whole-Exome Sequencing Identifies Rare and Low-Frequency Coding Variants Associated with LDL Cholesterol
The American Journal of Human Genetics, 94(2), 233–245.
By: L. Lange, Y. Hu, H. Zhang, C. Xue, E. Schmidt, Z. Tang, C. Bizon, E. Lange ..., J. Smith, E. Turner, G. Jun, H. Kang, G. Peloso, P. Auer, K. Li, J. Flannick, J. Zhang, C. Fuchsberger, K. Gaulton, C. Lindgren, A. Locke, A. Manning, X. Sim, M. Rivas, O. Holmen, O. Gottesman, Y. Lu, D. Ruderfer, E. Stahl, Q. Duan, Y. Li, P. Durda, S. Jiao, A. Isaacs, A. Hofman, J. Bis, A. Correa, M. Griswold, J. Jakobsdottir, A. Smith, P. Schreiner, M. Feitosa, Q. Zhang, J. Huffman, J. Crosby, C. Wassel, R. Do, N. Franceschini, L. Martin, J. Robinson, T. Assimes, D. Crosslin, E. Rosenthal, M. Tsai, M. Rieder, D. Farlow, A. Folsom, T. Lumley, E. Fox, C. Carlson, U. Peters, R. Jackson, C. van Duijn, A. Uitterlinden, D. Levy, J. Rotter, H. Taylor, V. Gudnason, D. Siscovick, M. Fornage, I. Borecki, C. Hayward, I. Rudan, Y. Chen, E. Bottinger, R. Loos, P. Sætrom, K. Hveem, M. Boehnke, L. Groop, M. McCarthy, T. Meitinger, C. Ballantyne, S. Gabriel, C. O’Donnell, W. Post, K. North, A. Reiner, E. Boerwinkle, B. Psaty, D. Altshuler, S. Kathiresan, D. Lin, G. Jarvik, L. Cupples, C. Kooperberg, J. Wilson, D. Nickerson, G. Abecasis, S. Rich, R. Tracy, C. Willer, S. Gabriel, D. Altshuler, G. Abecasis, H. Allayee, S. Cresci, M. Daly, P. de Bakker, M. DePristo, R. Do, P. Donnelly, D. Farlow, T. Fennell, K. Garimella, S. Hazen, Y. Hu, D. Jordan, G. Jun, S. Kathiresan, H. Kang, A. Kiezun, G. Lettre, B. Li, M. Li, C. Newton-Cheh, S. Padmanabhan, G. Peloso, S. Pulit, D. Rader, D. Reich, M. Reilly, M. Rivas, S. Schwartz, L. Scott, D. Siscovick, J. Spertus, N. Stitziel, N. Stoletzki, S. Sunyaev, B. Voight, C. Willer, S. Rich, E. Akylbekova, L. Atwood, C. Ballantyne, M. Barbalic, R. Barr, E. Benjamin, J. Bis, E. Boerwinkle, D. Bowden, J. Brody, M. Budoff, G. Burke, S. Buxbaum, J. Carr, D. Chen, I. Chen, W. Chen, P. Concannon, J. Crosby, L. Cupples, R. D’Agostino, A. DeStefano, A. Dreisbach, J. Dupuis, J. Durda, J. Ellis, A. Folsom, M. Fornage, C. Fox, E. Fox, V. Funari, S. Ganesh, J. Gardin, D. Goff, O. Gordon, W. Grody, M. Gross, X. Guo, I. Hall, N. Heard-Costa, S. Heckbert, N. Heintz, D. Herrington, D. Hickson, J. Huang, S. Hwang, D. Jacobs, N. Jenny, A. Johnson, C. Johnson, S. Kawut, R. Kronmal, R. Kurz, E. Lange, L. Lange, M. Larson, M. Lawson, C. Lewis, D. Levy, D. Li, H. Lin, C. Liu, J. Liu, K. Liu, X. Liu, Y. Liu, W. Longstreth, C. Loria, T. Lumley, K. Lunetta, A. Mackey, R. Mackey, A. Manichaikul, T. Maxwell, B. McKnight, J. Meigs, A. Morrison, S. Musani, J. Mychaleckyj, J. Nettleton, K. North, C. O’Donnell, D. O’Leary, F. Ong, W. Palmas, J. Pankow, N. Pankratz, S. Paul, M. Perez, S. Person, J. Polak, W. Post, B. Psaty, A. Quinlan, L. Raffel, V. Ramachandran, A. Reiner, K. Rice, J. Rotter, J. Sanders, P. Schreiner, S. Seshadri, S. Shea, S. Sidney, K. Silverstein, N. Smith, N. Sotoodehnia, A. Srinivasan, H. Taylor, K. Taylor, F. Thomas, R. Tracy, M. Tsai, K. Volcik, C. Wassel, K. Watson, G. Wei, W. White, K. Wiggins, J. Wilk, O. Williams, G. Wilson, J. Wilson, P. Wolf, N. Zakai, J. Hardy, J. Meschia, M. Nalls, A. Singleton, B. Worrall, M. Bamshad, K. Barnes, I. Abdulhamid, F. Accurso, R. Anbar, T. Beaty, A. Bigham, P. Black, E. Bleecker, K. Buckingham, A. Cairns, D. Caplan, B. Chatfield, A. Chidekel, M. Cho, D. Christiani, J. Crapo, J. Crouch, D. Daley, A. Dang, H. Dang, A. De Paula, J. DeCelie-Germana, A. Drumm, M. Dyson, J. Emerson, M. Emond, T. Ferkol, R. Fink, C. Foster, D. Froh, L. Gao, W. Gershan, R. Gibson, E. Godwin, M. Gondor, H. Gutierrez, N. Hansel, P. Hassoun, P. Hiatt, J. Hokanson, M. Howenstine, L. Hummer, J. Kanga, Y. Kim, M. Knowles, M. Konstan, T. Lahiri, N. Laird, C. Lange, L. Lin, X. Lin, T. Louie, D. Lynch, B. Make, T. Martin, S. Mathai, R. Mathias, J. McNamara, S. McNamara, D. Meyers, S. Millard, P. Mogayzel, R. Moss, T. Murray, D. Nielson, B. Noyes, W. O’Neal, D. Orenstein, B. O’Sullivan, R. Pace, P. Pare, H. Parker, M. Passero, E. Perkett, A. Prestridge, N. Rafaels, B. Ramsey, E. Regan, C. Ren, G. Retsch-Bogart, M. Rock, A. Rosen, M. Rosenfeld, I. Ruczinski, A. Sanford, D. Schaeffer, C. Sell, D. Sheehan, E. Silverman, D. Sin, T. Spencer, J. Stonebraker, H. Tabor, L. Varlotta, C. Vergara, R. Weiss, F. Wigley, R. Wise, F. Wright, M. Wurfel, R. Zanni, F. Zou, D. Nickerson, M. Rieder, P. Green, J. Shendure, J. Akey, C. Bustamante, D. Crosslin, E. Eichler, P. Fox, W. Fu, A. Gordon, S. Gravel, G. Jarvik, J. Johnsen, M. Kan, E. Kenny, J. Kidd, F. Lara-Garduno, S. Leal, D. Liu, S. McGee, T. O’Connor, B. Paeper, P. Robertson, J. Smith, J. Staples, J. Tennessen, E. Turner, G. Wang, Q. Yi, R. Jackson, U. Peters, C. Carlson, G. Anderson, H. Anton-Culver, T. Assimes, P. Auer, S. Beresford, C. Bizon, H. Black, R. Brunner, R. Brzyski, D. Burwen, B. Caan, C. Carty, R. Chlebowski, S. Cummings, J. Curb, C. Eaton, L. Ford, N. Franceschini, S. Fullerton, M. Gass, N. Geller, G. Heiss, B. Howard, L. Hsu, C. Hutter, J. Ioannidis, S. Jiao, K. Johnson, C. Kooperberg, L. Kuller, A. LaCroix, K. Lakshminarayan, D. Lane, N. Lasser, E. LeBlanc, K. Li, M. Limacher, D. Lin, B. Logsdon, S. Ludlam, J. Manson, K. Margolis, L. Martin, J. McGowan, K. Monda, J. Kotchen, L. Nathan, J. Ockene, M. O’Sullivan, L. Phillips, R. Prentice, J. Robbins, J. Robinson, J. Rossouw, H. Sangi-Haghpeykar, G. Sarto, S. Shumaker, M. Simon, M. Stefanick, E. Stein, H. Tang, K. Taylor, C. Thomson, T. Thornton, L. Van Horn, M. Vitolins, J. Wactawski-Wende, R. Wallace, S. Wassertheil-Smoller, D. Zeng, D. Applebaum-Bowden, M. Feolo, W. Gan, D. Paltoo, P. Sholinsky, A. Sturcke
TL;DR:
This large whole-exome-sequencing study for LDL-C identified a gene not known to be implicated in LDL- C and provides unique insight into the design and analysis of similar experiments.
(via Semantic Scholar)
TL;DR:
Gen expression profiles in 2,752 twins were assessed, using a classic twin design, to quantify expression heritability and quantitative trait loci (eQTLs) in peripheral blood, providing a new resource toward understanding the genetic control of transcription.
(via Semantic Scholar)
Physiologically based pharmacokinetic (PBPK) modeling of interstrain variability in trichloroethylene metabolism in the mouse
Environmental Health Perspectives, 122(5), 456.
Yi-Hui Zhou
Source: ORCID
Added: October 7, 2019
2014journal article
Heritability and genomics of gene expression in peripheral blood
Nature Genetics, 46(5), 430.
By: F. Wright, P. Sullivan, A. Brooks, F. Zou, W. Sun, K. Xia, V. Madar, R. Jansen ..., W. Chung, Y. Zhou & others
Source: ORCID
Added: October 7, 2019
2014journal article
Cadmium exposure and the epigenome: Exposure-associated patterns of DNA methylation in leukocytes from mother-baby pairs
Epigenetics, 9(2), 212–221.
By: A. Sanders, L. Smeester, D. Rojas, T. DeBussycher, M. Wu, F. Wright, Y. Zhou, J. Laine ..., J. Rager, G. Swamy & others
Source: ORCID
Added: October 7, 2019
2014journal article
Heritability and genomics of gene expression in peripheral blood
Nature Genetics, 46(5), 430–437.
By: F. Wright, P. Sullivan, A. Brooks, F. Zou, W. Sun, K. Xia, V. Madar, R. Jansen ..., W. Chung, Y. Zhou, A. Abdellaoui, S. Batista, C. Butler, G. Chen, T. Chen, D. D'Ambrosiol, P. Gallins, M. Ha, J. Hottenga
Source: NC State University Libraries
Added: August 6, 2018
2014journal article
Convergence of sample eigenvalues, eigenvectors, and principal component scores for ultra-high dimensional data
author keywords: High-dimension low sample size data; Principal component analysis; Random matrix
TL;DR:
This paper investigates principal component analysis under the ultra-high dimensional regime, where both the number of features and the sample size increase as the ratio of the two quantities also increases.
(via Semantic Scholar)
TL;DR:
When extrapolated to lower doses more relevant to environmental exposures, mouse population-derived variability estimates for TCE metabolism closely matched population variability estimates previously derived from human toxicokinetic studies with TCE, highlighting the utility of mouse interstrain metabolism studies for addressing toxicokinetics variability.
(via Semantic Scholar)
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