Works Published in 2015
Displaying all 8 works
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2015 journal article
Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.
Proceedings of the National Academy of Sciences of the United States of America.
author keywords: genome-wide; circadian clock; clock-controlled outputs; transcriptional regulation
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Genome, Plant; Transcription Factors / genetics; Transcriptome
TL;DR:
A genome-wide characterization of the direct targets of a key clock component in Arabidopsis revealed several CCA1 targets that do not cycle in either LL or LD conditions, suggesting that C CA1 plays an important role in regulating a large subset of the rhythmic transcriptome.
(via Semantic Scholar)
www.pnas.org (publisher PDF)
Source: ORCID
Added: January 25, 2021
2015 journal article
Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.
The Plant Journal : for Cell and Molecular Biology.
author keywords: CBF regulatory pathway; low-temperature regulatory network; freezing tolerance; Arabidopsis thaliana
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cold Temperature; Gene Expression Regulation, Plant; Regulon / genetics
TL;DR:
The results indicate that cold regulation of the CBF regulon involves extensive co-regulation by other first-wave transcription factors; that the low-temperature regulatory network beyond theCBF pathway is complex and highly interconnected; and that the increase in freezing tolerance that occurs with cold acclimation is only partially dependent on the CBf-CRT/DRE regulatory module.
(via Semantic Scholar)
Source: ORCID
Added: January 25, 2021
2015 journal article
Comparative proteomic analysis of Populus trichocarpa early stem from primary to secondary growth
JOURNAL OF PROTEOMICS, 126, 94–108.
author keywords: Proteomics; Early stem development; Secondary growth; Populus trichocarpa
MeSH headings : Plant Proteins / biosynthesis; Plant Stems / metabolism; Populus / metabolism; Proteome / biosynthesis; Proteomics
TL;DR:
The proteomic characteristics indicated that carbohydrate metabolism, oxido-reduction, protein degradation and secondary cell wall metabolism were the dominantly occurring biochemical processes during Populus early stem development.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa
JOURNAL OF PROTEOME RESEARCH, 14(10), 4158–4168.
Contributors: P. Loziuk n, J. Parker n, W. Li n, C. Lin n, J. Wang n , Q. Li *, R. Sederoff n, V. Chiang n, D. Muddiman n
author keywords: shotgun discovery proteomics; absolute quantification; PC-IDMS; cellulose biosynthesis; transcription factor; targeted mass spectrometiry; SRM
MeSH headings : Carbohydrate Metabolism; Cellulose / biosynthesis; Cellulose / genetics; Chromatography, Liquid; Gene Expression Regulation, Plant; Molecular Sequence Annotation; Plant Proteins / genetics; Plant Proteins / isolation & purification; Plant Proteins / metabolism; Populus / genetics; Populus / metabolism; Proteome / genetics; Proteome / isolation & purification; Proteome / metabolism; Proteomics; Tandem Mass Spectrometry; Transcription Factors / genetics; Transcription Factors / isolation & purification; Transcription Factors / metabolism; Wood / chemistry; Wood / metabolism; Xylem / genetics; Xylem / metabolism
TL;DR:
The study described herein sought to identify the proteins directly involved in cellulose biosynthesis during wood formation in Populus trichocarpa along with known xylem-specific transcription factors involved in regulating these key proteins.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
9. Industry, Innovation and Infrastructure
(OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(27), 8481–8486.
Contributors: J. Wang n , L. Chuang n, P. Loziuk n, H. Chen n, Y. Lin n, R. Shi n, G. Qu *, D. Muddiman n, R. Sederoff n, V. Chiang n
author keywords: AldOMT; COMT; lignin; phosphoproteomics; phosphoregulation
MeSH headings : Acrolein / analogs & derivatives; Acrolein / metabolism; Amino Acid Sequence; Binding Sites / genetics; Biocatalysis; Catechols / metabolism; Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Isoenzymes / genetics; Isoenzymes / metabolism; Lignin / biosynthesis; Methyltransferases / genetics; Methyltransferases / metabolism; Microscopy, Confocal; Molecular Sequence Data; Mutation; Phosphoproteins / metabolism; Phosphorylation; Plant Proteins / genetics; Plant Proteins / metabolism; Populus / enzymology; Populus / genetics; Populus / metabolism; Proteomics / methods; Protoplasts / enzymology; Protoplasts / metabolism; Sequence Homology, Amino Acid; Tandem Mass Spectrometry
TL;DR:
It is shown that reversible monophosphorylation at Ser123 or Ser125 acts as an on/off switch for the activity of 5-hydroxyconiferaldehyde O-methyltransferase 2 (PtrAldOMT2), an enzyme central to monolignol biosynthesis for lignification in stem-differentiating xylem of Populus trichocarpa.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 review
Adoption and economics of alternate wetting and drying water management for irrigated lowland rice
[Review of ]. FIELD CROPS RESEARCH, 170, 95–108.
author keywords: AWD; Field water tube; Farmers income; Impact pathway; Asia
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa
MOLECULAR PLANT, 8(1), 176–187.
author keywords: monolignol biosynthesis; Populus trichocarpa; metabolic flux; reaction and inhibition kinetics; LC-MS/MS; 4-coumaroyl and caffeoyl shikimic acids
MeSH headings : Acyl Coenzyme A / metabolism; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Coumaric Acids / pharmacology; Hydroxylation / drug effects; Plant Proteins / metabolism; Populus / drug effects; Populus / enzymology; Populus / metabolism; Propionates; Shikimic Acid / pharmacology
TL;DR:
4-coumaroyl and caffeoyl shikimic acids are inhibitors of Ptr4CL3 and Ptr 4CL5, which can reduce lignin content in a number of plant species and play significant regulatory roles when these inhibitors accumulate.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
IMPROVED PROTOCOL FOR ALKALINE NITROBENZENE OXIDATION OF WOODY AND NON-WOODY BIOMASS
JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 35(1), 52–61.
author keywords: Nitrobenzene oxidation; survivival factors; lignin model compounds; Sr/V and B/V ratios
Source: Web Of Science
Added: August 6, 2018
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