Works Published in 2019
Displaying works 1 - 20 of 24 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2019 journal article
Are lignin-derived carbon fibers graphitic enough?
Green Chemistry, 21(16), 4253–4265.
www.lib.ncsu.edu (repository)
Source: ORCID
Added: July 28, 2020
2019 journal article
Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future
PLANT DIRECT, 3(1).
author keywords: Arabidopsis; informatics; international collaboration; portal; The Arabidopsis Information Resource
TL;DR:
A “one‐stop shop” website, an Arabidopsis “Super‐Portal” to link tools, data resources, programmatic standards, and best practice descriptions for each data type are proposed, which must have community buy‐in and participation in its establishment and development to encourage adoption.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: February 17, 2020
2019 review
Nutrient Cycling in Organic Field Crops in Canada and the United States
[Review of ]. AGRONOMY JOURNAL, 111(6), 2769–2785.
Contributors: P. Carr *, M. Cavigelli*, H. Darby *, K. Delate *, J. Eberly *, G. Gramig *, J. Heckman*, E. Mallory *
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: January 21, 2020
2019 journal article
Wetland Ecosystem Resilience: Protecting and Restoring Valuable Ecosystems
Transactions of the ASABE, 62(6), 1541–1543.
Contributors: T. Messer n, K. Douglas-Mankin n, N. Nelson n & J. Etheridge n
author keywords: Agricultural wetlands; Resiliency; Temporal data; Treatment wetlands; Water chemistry; Water quality; Water treatment
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(Web of Science)
Source: ORCID
Added: January 21, 2020
2019 journal article
Undergraduate perceptions of climate education exposure in natural resources management
Transactions of the ASABE, 62(3), 831–839.
Contributors: N. Nelson* , L. Montefiore, C. Anthony, L. Merriman, E. Kuster & G. Fox
author keywords: Climate change; Climate science; Natural resources management; Postsecondary education; Undergraduate education; United States
UN Sustainable Development Goal Categories
4. Quality Education
(Web of Science)
13. Climate Action
(OpenAlex)
Source: ORCID
Added: December 31, 2019
2019 journal article
Enhanced carbon dioxide removal from coupled direct air capture-bioenergy systems
SUSTAINABLE ENERGY & FUELS, 3(11), 3135–3146.
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: November 11, 2019
2019 journal article
A novel synthetic-genetic-array-based yeast one-hybrid system for high discovery rate and short processing time
GENOME RESEARCH, 29(8), 1343–1351.
MeSH headings : Animals; DNA / genetics; DNA / metabolism; Gene Expression Regulation; Gene Regulatory Networks; Genetic Markers; Humans; Meiosis; Microarray Analysis / instrumentation; Microarray Analysis / methods; Plasmids / chemistry; Plasmids / metabolism; Ploidies; Populus / cytology; Protein Binding; Protoplasts / cytology; Protoplasts / metabolism; Saccharomyces cerevisiae / genetics; Saccharomyces cerevisiae / metabolism; Time Factors; Transcription Factors / genetics; Transcription Factors / metabolism; Two-Hybrid System Techniques
TL;DR:
A high-throughput meiosis-directed yeast one-hybrid system using the Magic Markers of the synthetic genetic array analysis that has a transcription factor–DNA interaction discovery rate twice as high as the conventional diploid-mating approach and a processing time nearly one-tenth of the haploid-transformation method.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: September 16, 2019
2019 journal article
Quantitative fermentation of unpretreated transgenic poplar by Caldicellulosiruptor bescii
NATURE COMMUNICATIONS, 10(1).
Contributors: C. Straub n, P. Khatibi n, J. Wang n , J. Conway n, A. Williams-Rhaesa*, I. Peszlen n , V. Chiang n, M. Adams *, R. Kelly n
MeSH headings : Biomass; Cellulose / metabolism; Clostridiales / genetics; Clostridiales / metabolism; Ethanol / metabolism; Fermentation; Industrial Microbiology; Lignin / metabolism; Metabolic Engineering; Plants, Genetically Modified / chemistry; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Polysaccharides / metabolism; Populus / chemistry; Populus / genetics; Populus / metabolism
TL;DR:
The authors pair transgenic lignin modified poplar lines with engineered Caldicellusiruptor bescii to achieve biomass solubilization and ethanol conversion without pretreatment and the nearly quantitative microbial conversion of the carbohydrate content of unpretreated transgen lignocellulosic biomass bodes well for full utilization of renewable biomass feedstocks.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy
(Web of Science)
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 26, 2019
2019 journal article
Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals
Phytochemistry Reviews, 18(6), 1409–1433.
author keywords: Diel; Time of day; Temporal regulation; Circadian rhythms; Photoperiod responses; Environmental regulation; Specialized metabolites; Phenols; Flavonoids; Terpenoids; Alkaloids
TL;DR:
The mechanisms underlying diel and seasonal variations in phytochemical composition are reviewed and examples of temporal regulation of specific compounds within phenol, terpenoid, and alkaloidPhytochemical classes are provided and integrating temporal factors will improve the understanding of the underlying regulatory connections and ultimately improve the quality of phytochemicals.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: August 15, 2019
2019 article
Warm nights disrupt global transcriptional rhythms in field-grown rice panicles
Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). (Vol. 7). Vol. 7.
TL;DR:
The system-wide transcriptional perturbations suggest that WNT disrupts the tight temporal coordination between internal molecular events and the environment resulting in reduced productivity in rice.
(via Semantic Scholar)
Source: ORCID
Added: July 17, 2019
2019 review
Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks
[Review of ]. FRONTIERS IN PLANT SCIENCE, 10.
Contributors: A. Myburg *, S. Hussey *, J. Wang n , N. Street * & E. Mizrachi *
author keywords: synthetic biology (synbio); systems biology; systems genetics; woody biomass; biorefinery; bioeconomy; lignin biosynthesis; wood formation
TL;DR:
A bioengineering paradigm based on a deeper understanding and rational design of biological parts, devices, and integrated systems will be crucial for the development of a new generation of woody biorefinery crops.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: July 8, 2019
2019 journal article
Novel transcriptional responses to heat revealed by turning up the heat at night
Plant Molecular Biology, 101(1-2), 1–19.
author keywords: Heat shock; Diel regulation; Transcriptional networks; Abiotic stress; Gating of plant responses; Circadian clock
MeSH headings : Acclimatization; Arabidopsis / genetics; Arabidopsis / physiology; Circadian Clocks / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Genome, Plant / genetics; Heat-Shock Proteins / genetics; Heat-Shock Response / genetics; Hot Temperature; Seedlings / genetics; Seedlings / physiology; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
TL;DR:
It is proposed that using time as a perturbagen is an approach that will enhance the understanding of plant regulatory networks and responses to environmental stresses and underpinning new aspects of heat stress responses not previously appreciated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: June 25, 2019
2019 journal article
New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum
J. Exp. Bot, 4.
author keywords: Candidate genes; chilling stress; genome-wide association mapping; genomic regions; root-shoot; sorghum
MeSH headings : Chromosome Mapping; Cold Temperature; Crop Production; Genes, Plant; Genetic Markers; Sorghum / genetics; Stress, Physiological / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: June 25, 2019
2019 journal article
Directions for research and training in plant omics: Big Questions and Big Data
Plant Direct, 3(4).
author keywords: genomics; metabolomics; proteomics; training; transcriptomics
TL;DR:
It is hoped that this article will inspire beginning and established scientists, corporations, and funding agencies to pursue directions in research and training identified by this workshop, capitalizing on the reference species Arabidopsis thaliana and other valuable plant systems.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: June 25, 2019
2019 article
Featured Collection Introduction: The Emerging Science of Aquatic System Connectivity II
Smith, L. L., Jones, C. N., & Nelson, N. G. (2019, June). JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION, Vol. 55, pp. 526–528.
Contributors: L. Smith *, C. Jones * & N. Nelson n
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: June 24, 2019
2019 article
Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa
Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2019, June 19). (Vol. 6). Vol. 6.
TL;DR:
A computational model is developed that more accurately estimates transcript and protein abundances in differentiating xylem tissue when individual and families of monolignol genes were perturbed, and is an important addition to current models of lignin biosynthesis.
(via Semantic Scholar)
Source: ORCID
Added: June 20, 2019
2019 journal article
Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome
RNA, 25(6), 669–684.
author keywords: Oryza sativa; differential gene expression; splicing; reference genome; RNA-seq; transcriptome analysis
MeSH headings : Alternative Splicing; Base Sequence; Chromosome Mapping / methods; Gene Expression Profiling / standards; Genes, Essential; Genome, Plant; High-Throughput Nucleotide Sequencing; Oryza / classification; Oryza / genetics; Oryza / metabolism; Polymorphism, Single Nucleotide; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reference Standards; Sequence Alignment; Transcriptome
TL;DR:
It is concluded that even between two closely related genomes of similar quality, using the reference genome that is most closely related to the species being sampled significantly improves transcriptome analysis.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: June 4, 2019
2019 journal article
Featured Collection Introduction: The Emerging Science of Aquatic System Connectivity I
JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION, 55(2), 287–293.
Contributors: C. Jones *, N. Nelson n & L. Smith *
author keywords: aquatic system connectivity; hydrologic connectivity; ecosystem functions; ecosystem services
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: April 29, 2019
2019 journal article
The AREB1 Transcription Factor Influences Histone Acetylation to Regulate Drought Responses and Tolerance in Populus trichocarpa
Plant Cell, 31(3), 663–686.
MeSH headings : Abscisic Acid / metabolism; Acetylation; Droughts; Gene Expression Regulation, Plant; Histone Acetyltransferases / genetics; Histone Acetyltransferases / metabolism; Histones / metabolism; Nucleotide Motifs; Phenotype; Plant Growth Regulators / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Populus / genetics; Populus / physiology; Promoter Regions, Genetic / genetics; Protein Processing, Post-Translational; RNA Polymerase II / genetics; RNA Polymerase II / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism; Transcriptional Activation
TL;DR:
The combinatorial function of the ternary proteins establishes a coordinated histone acetylation and transcription factor-mediated gene activation for drought response and tolerance in Populus species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Source: ORCID
Added: April 24, 2019
2019 journal article
Flux modeling for monolignol biosynthesis
Current Opinion in Biotechnology, 56, 187–192.
Contributors: J. Wang n , M. Matthews n, P. Naik n, C. Williams n, J. Ducoste n, R. Sederoff n, V. Chiang n
MeSH headings : Biosynthetic Pathways; Kinetics; Lignin / biosynthesis; Metabolic Engineering; Metabolic Flux Analysis; Models, Biological
TL;DR:
This review summarizes the recent progress in flux modeling and its application to lignin engineering for improved plant development and utilization.
(via Semantic Scholar)
Source: ORCID
Added: April 24, 2019
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