Works Published in 2012

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Displaying all 16 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2012 journal article

Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus.

40(18), 8917–8926.

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧
MeSH headings : Alleles; Animals; DNA Methylation; Genetic Loci; Genomic Imprinting; Mice; Mice, Inbred C57BL; Nerve Tissue Proteins / genetics; Nerve Tissue Proteins / metabolism; Nuclear Proteins; Polyadenylation; Protein Isoforms / genetics; Protein Isoforms / metabolism; RNA, Messenger / metabolism; Transcription, Genetic; Ubiquitin-Protein Ligases / genetics; Ubiquitin-Protein Ligases / metabolism
Source: ORCID
Added: September 28, 2022

2012 journal article

Effects of Column and Gradient Lengths on Peak Capacity and Peptide Identification in Nanoflow LC-MS/MS of Complex Proteomic Samples

Journal of The American Society for Mass Spectrometry, 24(1), 148–153.

By: E. Hsieh*, M. Bereman*, S. Durand, G. Valaskovic & M. MacCoss*

co-author countries: United States of America 🇺🇸
author keywords: Shotgun proteomics; Nanoflow liquid chromatography; Peak capacity
MeSH headings : Caenorhabditis elegans Proteins / analysis; Caenorhabditis elegans Proteins / chemistry; Chromatography, Liquid / instrumentation; Chromatography, Liquid / methods; Nanotechnology / instrumentation; Peptide Mapping / instrumentation; Peptide Mapping / methods; Proteome / analysis; Proteome / chemistry; Proteomics / instrumentation; Proteomics / methods; Tandem Mass Spectrometry / methods
Source: Crossref
Added: January 5, 2021

2012 journal article

Resetting for the Next Generation

Molecular Cell, 48(6), 819–821.

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧
Sources: Crossref, ORCID
Added: August 28, 2020

2012 journal article

Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes

Molecular Cell, 47(6), 909–920.

co-author countries: France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧
MeSH headings : Animals; Blastocyst / metabolism; Cadherins / genetics; DNA Methylation; Embryo, Mammalian / cytology; Embryo, Mammalian / metabolism; Fertilization; Genetic Testing; Genomic Imprinting; Germ Cells / metabolism; Mice; Oocytes / metabolism; Pseudogenes; Sequence Analysis, DNA
Sources: Crossref, ORCID
Added: August 28, 2020

2012 journal article

341 ANDROGENETIC ALOPECIA AT VARIOUS AGES AND PROSTATE CANCER RISK IN AN EQUAL ACCESS MULTIETHNIC CASE CONTROL SERIES OF VETERANS

Journal of Urology, 187(4S).

By: J. Thomas, J. Antonelli, L. Bañez, L. Gerber, C. Hoyo*, D. Grant, W. Demark-Wahnefried*, E. Platz ...

co-author countries: United States of America 🇺🇸
Source: Crossref
Added: August 28, 2020

2012 journal article

Insulin-Like Growth Factor 2/H19 Methylation at Birth and Risk of Overweight and Obesity in Children

The Journal of Pediatrics, 161(1), 31–39.

By: E. Perkins*, S. Murphy*, A. Murtha*, J. Schildkraut*, R. Jirtle*, W. Demark-Wahnefried*, M. Forman*, J. Kurtzberg* ...

co-author countries: United States of America 🇺🇸
MeSH headings : DNA Methylation; Female; Humans; Infant; Insulin-Like Growth Factor II / genetics; Male; Obesity / genetics; Overweight / genetics; Prospective Studies; Risk
Source: Crossref
Added: August 28, 2020

2012 journal article

Gender-specific methylation differences in relation to prenatal exposure to cigarette smoke

Gene, 494(1), 36–43.

co-author countries: United States of America 🇺🇸
author keywords: Sex-specific methylation effects; Imprinted gene; Pyrosequencing; Early origins hypothesis
MeSH headings : Adult; Birth Weight; DNA Methylation; Female; Fetal Blood / chemistry; Genomic Imprinting; Humans; Insulin-Like Growth Factor II / genetics; Male; Maternal-Fetal Exchange; Pregnancy; RNA, Long Noncoding; RNA, Untranslated; Sex Characteristics; Smoking / genetics
Source: Crossref
Added: August 28, 2020

2012 journal article

Genetic variants in IGF-I, IGF-II, IGFBP-3, and adiponectin genes and colon cancer risk in African Americans and Whites

Cancer Causes & Control, 23(7), 1127–1138.

By: T. Keku*, A. Vidal*, S. Oliver*, C. Hoyo*, I. Hall*, O. Omofoye*, M. McDoom*, K. Worley* ...

co-author countries: United States of America 🇺🇸
author keywords: Insulin; IGF; Polymorphism; Colon cancer; African Americans
MeSH headings : Adiponectin / genetics; Adiponectin / metabolism; Black or African American / genetics; Aged; C-Peptide / blood; Colonic Neoplasms / blood; Colonic Neoplasms / ethnology; Colonic Neoplasms / genetics; Female; Gene Frequency; Genetic Predisposition to Disease / ethnology; Genetic Predisposition to Disease / genetics; Genotype; Genotyping Techniques / methods; Humans; Insulin-Like Growth Factor Binding Protein 3 / genetics; Insulin-Like Growth Factor Binding Protein 3 / metabolism; Insulin-Like Growth Factor I / genetics; Insulin-Like Growth Factor I / metabolism; Insulin-Like Growth Factor II / genetics; Insulin-Like Growth Factor II / metabolism; Logistic Models; Male; Middle Aged; Polymorphism, Genetic; Risk Factors; White People / genetics
Source: Crossref
Added: August 28, 2020

2012 journal article

Association of cord blood methylation fractions at imprinted insulin-like growth factor 2 (IGF2), plasma IGF2, and birth weight

Cancer Causes & Control, 23(4), 635–645.

co-author countries: United States of America 🇺🇸
author keywords: IGF2; H19; ELISA; DNA methylation; Epigenetics; Epidemiology
MeSH headings : Birth Weight / genetics; DNA Methylation / genetics; Enzyme-Linked Immunosorbent Assay; Female; Fetal Blood; Genomic Imprinting; Humans; Infant, Newborn; Insulin-Like Growth Factor II / analysis; Insulin-Like Growth Factor II / genetics; Male
Source: Crossref
Added: August 28, 2020

2012 journal article

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline

Molecular & Cellular Proteomics, 11(5), 202–214.

By: B. Schilling*, M. Rardin*, B. MacLean*, A. Zawadzka*, B. Frewen*, M. Cusack*, D. Sorensen*, M. Bereman* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Acetylation; Amino Acid Sequence; Animals; Breast Neoplasms; Calibration / standards; Cell Line, Tumor; Chromatography, High Pressure Liquid; Culture Media, Conditioned / chemistry; Female; Fourier Analysis; Humans; Mice; Mice, Knockout; Mitochondria, Liver / enzymology; Mitochondria, Muscle / metabolism; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Mapping / methods; Phosphorylation; Protein Processing, Post-Translational; Proteome / chemistry; Proteome / isolation & purification; Proteome / metabolism; Proteomics; Pyruvate Dehydrogenase Complex / chemistry; Pyruvate Dehydrogenase Complex / isolation & purification; Pyruvate Dehydrogenase Complex / metabolism; Reference Standards; Software; Tandem Mass Spectrometry / standards
Source: Crossref
Added: February 24, 2020

2012 journal article

Learning Score Function Parameters for Improved Spectrum Identification in Tandem Mass Spectrometry Experiments

Journal of Proteome Research, 11(9), 4499–4508.

By: M. Spivak*, M. Bereman*, M. MacCoss* & W. Noble*

co-author countries: United States of America 🇺🇸
author keywords: machine learning; spectrum identification; shotgun proteomics
MeSH headings : Algorithms; Artificial Intelligence; Caenorhabditis elegans Proteins / chemistry; Peptide Fragments / chemistry; Peptide Mapping / methods; Reproducibility of Results; Saccharomyces cerevisiae Proteins / chemistry; Software; Tandem Mass Spectrometry / methods
Source: Crossref
Added: February 24, 2020

2012 journal article

Evaluation of Front-End Higher Energy Collision-Induced Dissociation on a Benchtop Dual-Pressure Linear Ion Trap Mass Spectrometer for Shotgun Proteomics

Analytical Chemistry, 84(3), 1533–1539.

By: M. Bereman*, J. Canterbury*, J. Egertson*, J. Horner*, P. Remes*, J. Schwartz*, V. Zabrouskov*, M. MacCoss*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Caenorhabditis elegans / metabolism; Glycopeptides / analysis; Mass Spectrometry / instrumentation; Mass Spectrometry / methods; Phosphopeptides / analysis; Pressure; Proteomics / instrumentation; Software
Source: Crossref
Added: February 24, 2020

2012 journal article

Homopteran Vector Biomarkers for Efficient Circulative Plant Virus Transmission are Conserved in Multiple Aphid Species and the Whitefly Bemisia tabaci

Journal of Integrative Agriculture, 11(2), 249–262.

co-author countries: United States of America 🇺🇸
author keywords: aphid; whitefly; Schizaphis graminum; Bemisia tabaci; Acyrthosiphon pisum; Toxoptera citricida; Myzus persicae; proteomics; biomarker; circulative transmission; begomovirus; luteovirus; geminivirus; leafhopper; selected reaction monitoring; SRM; mass spectrometry; targeted proteomics; Skyline
Source: Crossref
Added: February 24, 2020

2012 journal article

De Novo Correction of Mass Measurement Error in Low Resolution Tandem MS Spectra for Shotgun Proteomics

Journal of The American Society for Mass Spectrometry, 23(12), 2075–2082.

co-author countries: United States of America 🇺🇸
author keywords: Mass spectrometry; Proteomics; Tandem mass spectrometry; Calibration; Mass measurement accuracy; Shotgun proteomics; Resolution
MeSH headings : Algorithms; Calibration; Models, Molecular; Peptide Fragments / chemistry; Peptide Mapping / methods; Proteomics / methods; Saccharomyces cerevisiae Proteins / chemistry; Sensitivity and Specificity; Tandem Mass Spectrometry / methods; Tandem Mass Spectrometry / standards
Source: Crossref
Added: February 24, 2020

2012 journal article

A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome

Analytical and Bioanalytical Chemistry, 403(8), 2397–2402.

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
author keywords: Protein turnover; Respiratory distress syndrome; Selected reaction monitoring; SRM; Protein kinetics; Protein metabolism
MeSH headings : Amino Acid Sequence; Complement Factor B / analysis; Complement Factor B / metabolism; Humans; Infant, Newborn; Kinetics; Mass Spectrometry / methods; Molecular Sequence Data; Protein Precursors / analysis; Protein Precursors / metabolism; Proteins / analysis; Proteins / metabolism; Proteolipids / analysis; Proteolipids / metabolism; Proteomics / methods; Pulmonary Surfactant-Associated Protein B / analysis; Pulmonary Surfactant-Associated Protein B / metabolism; Respiratory Distress Syndrome, Newborn / metabolism; Trachea / metabolism
Source: Crossref
Added: February 24, 2020

2012 journal article

The development of selected reaction monitoring methods for targeted proteomics via empirical refinement

PROTEOMICS, 12(8), 1134–1141.

co-author countries: United States of America 🇺🇸
author keywords: Selected reaction monitoring; Skyline; SRM assays; Targeted proteomics; Technology
MeSH headings : Amino Acid Sequence; Calibration; Humans; Infant, Newborn; Lung / physiopathology; Mass Spectrometry / methods; Mass Spectrometry / standards; Molecular Sequence Data; Peptides / analysis; Peptides / chemical synthesis; Proteomics / methods; Proteomics / standards; Pulmonary Surfactant-Associated Protein B / analysis; Reference Standards; Reproducibility of Results; Respiratory Distress Syndrome, Newborn / diagnosis; Respiratory Distress Syndrome, Newborn / physiopathology; Sensitivity and Specificity; Software
Source: Crossref
Added: February 24, 2020

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