Works Published in 2018

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Displaying works 1 - 20 of 101 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2018 journal article

Methanogenesis

Current Biology, 28(13), R727–R732.

By: Z. Lyu*, N. Shao*, T. Akinyemi* & W. Whitman*

TL;DR: Historically, methanogenesis has been viewed as a highly specialized metabolism restricted to a narrow group of prokaryotes, however, recent developments have revealed enormous diversity within the methanogens and suggest that this metabolism is one of the most ancient on earth. (via Semantic Scholar)
Source: ORCID
Added: August 16, 2023

2018 article

Diversity and Taxonomy of Methanogens

Biogenesis of Hydrocarbons, pp. 1–59.

By: Z. Lyu* & Y. Liu*

UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: ORCID
Added: August 16, 2023

2018 journal article

Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis

Journal of Bacteriology, 200(7).

By: Z. Lyu*, C. Chou*, H. Shi*, L. Wang*, R. Ghebreab*, D. Phillips*, Y. Yan*, E. Duin*, W. Whitman*

Ed(s): W. Metcalf

TL;DR: A working model for MCR assembly is formed and posttranslational modifications and F430 cofactors are embedded in the active sites and can be further tested by the heterologous expression system established here. (via Semantic Scholar)
Source: ORCID
Added: August 16, 2023

2018 journal article

Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments

The ISME Journal.

By: Z. Lyu* & Y. Lu*

MeSH headings : Antioxidants / chemistry; Bayes Theorem; Cluster Analysis; DNA Repair; Euryarchaeota / genetics; Euryarchaeota / metabolism; Genome, Bacterial; Genomics; Methane / metabolism; Oxidative Stress; Phylogeny; RNA, Bacterial / genetics; RNA, Ribosomal, 16S / genetics; Reactive Oxygen Species / metabolism
TL;DR: This work systematically predicted and annotated antioxidant features from representative genomes across six well-established methanogen orders and suggested that the enrichment of antioxidant features in the Class II methanogens may have played a key role in the adaption of this group to oxidative environments today and historically. (via Semantic Scholar)
Source: ORCID
Added: August 16, 2023

2018 journal article

Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators.

Journal of Experimental Botany, 8.

By: N. N*, V. Broeck L, Z. S*, . Cotte B, D. M*, G. K*, I. D*, D. I*

author keywords: AHA2; Arabidopsis thaliana; CRRSP38; leaf growth; mild osmotic stress; phosphoproteome; signalling
MeSH headings : Arabidopsis / drug effects; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Mannitol / pharmacology; Phosphoproteins / metabolism; Plant Growth Regulators / metabolism; Plant Leaves / drug effects; Plant Leaves / metabolism; Proteome / drug effects; Proteome / metabolism
TL;DR: Early changes in the Arabidopsis leaf proteome and phosphoproteome are captured upon mild mannitol stress and AHA2 and CRRSP38 are identified as novel regulators of shoot growth under osmotic stress. (via Semantic Scholar)
Source: ORCID
Added: October 21, 2022

2018 journal article

The Pivotal Role of Ethylene in Plant Growth.

Trends in Plant Science, 4.

By: M. Dubois*, . Broeck L Van & D. Inzé*

MeSH headings : Ethylenes / metabolism; Plant Development; Plant Growth Regulators / physiology; Plant Leaves / growth & development
TL;DR: This review focuses on how ethylene regulates shoot growth, with an emphasis on leaves, and alters the expression of ethylene response factors (ERFs) provides a new strategy for targeted ethylene-response engineering. (via Semantic Scholar)
Source: ORCID
Added: October 21, 2022

2018 journal article

Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in <em>Streptomyces</em>

Antibiotics, 7(1), 12.

By: M. Choudoir*, C. Pepe-Ranney* & D. Buckley*

author keywords: Streptomyces; biogeography; comparative genomics; diversification; secondary metabolite biosynthetic gene clusters; SMGC; natural products
TL;DR: It is shown that changes in SMGC diversity between the sister-taxa were driven primarily by gene acquisition and deletion events, and these changes were associated with an overall change in genome size which accompanied lineage divergence. (via Semantic Scholar)
Source: ORCID
Added: September 18, 2022

2018 journal article

Volatile Organic Compound Emissions From Soil Following Wetting Events

Journal of Geophysical Research: Biogeosciences.

By: S. Rossabi*, M. Choudoir*, D. Helmig*, J. Hueber* & N. Fierer*

author keywords: volatile organic compounds; soil; rewetting pulse; carbon emission rates; carbon flux; carbon dynamics; birch effect
Source: ORCID
Added: September 18, 2022

2018 journal article

Variation in range size and dispersal capabilities of microbial taxa

Ecology, 99(2), 322–334.

author keywords: biogeography; dispersal; dust-associated microbes; geographic range size; microbial dispersal; microbiology
MeSH headings : Animals; Archaea; Bacteria / classification; Ecosystem; Plants
TL;DR: Most microorganisms have small ranges and few have large ranges, a pattern similar to the range size distributions commonly observed for macrobes, which provides insight into the factors shaping patterns of microbial biogeography. (via Semantic Scholar)
Source: ORCID
Added: September 18, 2022

2018 journal article

Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa

The ISME Journal, 12(9), 2176–2186.

MeSH headings : Climate; Gene Flow; Genome, Bacterial; Genomics; Phenotype; Phylogeny; Phylogeography; Streptomyces / classification; Streptomyces / genetics; Streptomyces / isolation & purification; Temperature
TL;DR: Data provide further support for the hypothesis that the Streptomyces latitudinal diversity gradient was formed as a result of historical demographic processes defined by dispersal limitation and driven by paleoclimate dynamics. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (OpenAlex)
Source: ORCID
Added: September 18, 2022

2018 journal article

Integration of Multiple Metabolic Signals Determines Cell Fate Prior to Commitment

Molecular Cell, 71(5), 733–744.e11.

By: O. Argüello-Miranda*, Y. Liu*, N. Wood*, P. Kositangool* & A. Doncic*

Contributors: O. Argüello-Miranda*, Y. Liu*, N. Wood*, P. Kositangool* & A. Doncic*

MeSH headings : Bayes Theorem; Meiosis / physiology; Metabolic Networks and Pathways / physiology; Saccharomycetales / metabolism; Saccharomycetales / physiology
TL;DR: The results show that cells can decide their future fates long before commitment mechanisms are activated, when multiple metabolic parameters simultaneously cross cell-fate-specific thresholds. (via Semantic Scholar)
UN Sustainable Development Goal Categories
16. Peace, Justice and Strong Institutions (OpenAlex)
Source: ORCID
Added: July 11, 2022

2018 journal article

COMPOSICIÓN QUÍMICA Y COMPUESTOS BIOACTIVOS DE TREINTA ACCESIONES DE KIWICHA (Amaranthus caudatus L.)

Rev Soc Quím Perú, 84, n.3, 362–374. http://www.scielo.org.pe/scielo.php?script=sci_arttext&pid=S1810-634X2018000300009

By: C. Gomez, R. Ruth, C. Ritva, Q. Karina & Fredy

Source: ORCID
Added: April 15, 2022

2018 journal article

Gibberellins negatively modulate ovule number in plants

Development, 145(13), dev163865.

By: M. Gomez*, D. Barro-Trastoy*, E. Escoms*, M. Saura-Sánchez*, I. Sánchez*, A. Briones-Moreno*, F. Vera-Sirera*, E. Carrera* ...

author keywords: Ovule; Seed; Gibberellin; Auxin; Arabidopsis; Tomato
MeSH headings : Arabidopsis / cytology; Arabidopsis / embryology; Arabidopsis Proteins / metabolism; Gibberellins / metabolism; Ovule / cytology; Ovule / embryology
TL;DR: This work provides molecular and genetic evidence that points to DELLA proteins as novel players in the determination of ovule number in Arabidopsis and in species of agronomic interest, adding a new layer of complexity to this important developmental process. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Crossref, NC State University Libraries
Added: October 9, 2021

2018 article

Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)

Assié, A., Leisch, N., Meier, D. V., Gruber-Vodicka, H., Tegetmeyer, H. E., Meyerdirks, A., … Petersen, J. M. (2018, October 8). (Vol. 10). Vol. 10.

By: A. Assié*, N. Leisch*, D. Meier*, H. Gruber-Vodicka*, H. Tegetmeyer*, A. Meyerdirks*, M. Kleiner n, T. Hinzke* ...

UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: ORCID
Added: August 9, 2021

2018 article

A metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities

Kleiner, M., Dong, X., Hinzke, T., Wippler, J., Thorson, E., Mayer, B., & Strous, M. (2018, January 9). (Vol. 1). Vol. 1.

By: M. Kleiner n, X. Dong*, T. Hinzke*, J. Wippler*, E. Thorson*, B. Mayer*, M. Strous*

TL;DR: The direct Protein-SIF method that is developed allows linking microbial species in communities to the environmental carbon sources they consume by determining their stable carbon isotope signature and allows assessing which carbon fixation pathway is used by autotrophic microorganisms that directly assimilate CO2. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: ORCID
Added: August 9, 2021

2018 journal article

Interspecific Variation in Leaf Functional and Defensive Traits in Oak Species and Its Underlying Climatic Drivers

PLOS ONE, 13(8), e0202548.

Will Petry

MeSH headings : Adaptation, Physiological; Climatic Processes; Ecosystem; Herbivory / physiology; Lignin / metabolism; Nitrogen / metabolism; Phenols / metabolism; Phenotype; Plant Leaves / growth & development; Principal Component Analysis; Quercus / growth & development
TL;DR: The role of abiotic controls over all-inclusive axes of trait variation are emphasized and contribute to a more complete understanding of interspecific variation in plant functional strategies. (via Semantic Scholar)
Source: ORCID
Added: March 4, 2021

2018 journal article

Global predation pressure redistribution under future climate change

Nature Climate Change, 8(12), 1087–1091.

TL;DR: A global experiment using model caterpillars shows that climate explains patterns of predation better than latitude or elevation alone, and predation pressure is found to be greater under higher temperatures and more stable climatic conditions. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (OpenAlex)
Source: ORCID
Added: March 4, 2021

2018 journal article

Elevational Gradients in Plant Defences and Insect Herbivory: Recent Advances in the Field and Prospects for Future Research

Ecography, 41(9), 1485–1496.

Will Petry

author keywords: abiotic factors; climate change; community ecology; diversity; ecological gradients; insect herbivory; plant defences; tritrophic interactions
TL;DR: It is concluded that the next generation of studies should embrace community complexity – including multi‐trophic dynamics and the multivariate nature of plant defence – and to do so by combining observational data, manipulative experiments and emerging analytical tools. (via Semantic Scholar)
Source: ORCID
Added: March 4, 2021

2018 journal article

A competition–defence trade‐off both promotes and weakens coexistence in an annual plant community

Journal of Ecology, 106(5), 1806–1818.

Ed(s): I. Bartomeus

author keywords: annual plant; coexistence; competition; competition-defence trade-off; fitness hierarchy; granivory; harvester ant; seed depot
TL;DR: The results show that the presence of a competition–defence trade‐off in a community with stabilising niche differences does not always increase diversity and suggest that variation in consumer pressure may be an important driver of large‐scale diversity patterns. (via Semantic Scholar)
Source: ORCID
Added: March 4, 2021

2018 chapter

Toricelliaceae

In K. Kubitzki, J. W. Kadereit, & V. Bittrich (Eds.), The Families and Genera of Vascular Plants : Flowering Plants Eudicots-Apiales, Gentianales (Except Rubiaceae): Vol. XV (pp. 549–556). Switzerland: Springer.

By: G. Plunkett, Q. Xiang, P. Lowery & G. Schutzs

Ed(s): K. Kubitzki, J. Kadereit & V. Bittrich

Source: NC State University Libraries
Added: November 21, 2020

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