Plant and Microbial Biology
College of Agriculture and Life Sciences
Works Published in 2019
Displaying works 1 - 20 of 86 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2019 journal article
Transplanting the pathway engineering toolbox to methanogens
Current Opinion in Biotechnology, 59, 46–54.
MeSH headings : Animals; Chemoautotrophic Growth; Ecosystem; Humans; Methane; Soil
manuscript.elsevier.com (publisher PDF)
Source: ORCID
Added: August 16, 2023
2019 article
Diversity and Taxonomy of Methanogens
Lyu, Z., & Liu, Y. (2019, July). Biogenesis of Hydrocarbons, pp. 19–77.
Source: ORCID
Added: August 16, 2023
2019 journal article
The Nbp35/ApbC homolog acts as a nonessential [4Fe‐4S] transfer protein in methanogenic archaea
FEBS Letters, 594(5), 924–932.
MeSH headings : Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Cell Nucleus / metabolism; Cytosol / metabolism; Gene Deletion; Iron-Sulfur Proteins / genetics; Iron-Sulfur Proteins / metabolism; Methanococcus / genetics; Methanococcus / growth & development; Methanococcus / metabolism; Phylogeny
Source: ORCID
Added: August 16, 2023
2019 journal article
A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria
MSystems, 4(2).
Ed(s): K. Whiteson
author keywords: Actinobacteria; VOC; actinomycetes; microbial interactions; natural products; volatile organic compounds
Source: ORCID
Added: September 18, 2022
2019 journal article
Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes
Microbiome.
author keywords: Gut microbiome; Metaproteomics; Crohn's disease; Longitudinal analyses; Microbial metabolic function; Human microbiome
MeSH headings : Acetylglucosamine / analysis; Adult; Bacteria / genetics; Bacteria / metabolism; Crohn Disease / microbiology; Crohn Disease / surgery; Cytidine Monophosphate N-Acetylneuraminic Acid / analysis; Fatty Acids, Volatile / analysis; Feces / microbiology; Female; Gastrointestinal Microbiome / genetics; Gastrointestinal Microbiome / physiology; Humans; Male; Middle Aged; Proteome / metabolism; Proteomics; RNA, Ribosomal, 16S / genetics
Source: ORCID
Added: August 25, 2022
2019 journal article
Combining integrated systems-biology approaches with intervention-based experimental design provides a higher-resolution path forward for microbiome research
Behavioral and Brain Sciences.
Source: ORCID
Added: August 25, 2022
2019 journal article
Meiosis research in orphan and non-orphan tropical crops
Frontiers in Plant Science, 10, 1–7.
author keywords: meiosis; plant breeding; genetic diversity; tropical agriculture; food security; climate change
Source: ORCID
Added: July 11, 2022
2019 article
TheTrichoplaxmicrobiome: the simplest animal lives in an intimate symbiosis with two intracellular bacteria
Gruber-Vodicka, H. R., Leisch, N., Kleiner, M., Hinzke, T., Liebeke, M., McFall-Ngai, M., … Dubilier, N. (2019, March 5). (Vol. 3). Vol. 3.
Source: ORCID
Added: August 9, 2021
2019 article
Sulfur-oxidizing symbionts without canonical genes for autotrophic CO2fixation
Seah, B. K. B., Antony, C. P., Huettel, B., Zarzycki, J., Borzyskowski, L. S., Erb, T. J., … Gruber-Vodicka, H. R. (2019, February 5). (Vol. 2). Vol. 2.
Source: ORCID
Added: August 9, 2021
2019 article
Host-microbe interactions in the chemosyntheticRiftia pachyptilasymbiosis
Hinzke, T., Kleiner, M., Breusing, C., Felbeck, H., Häsler, R., Sievert, S. M., … Markert, S. (2019, May 27). (Vol. 5). Vol. 5.
Source: ORCID
Added: August 9, 2021
2019 journal article
Inducibility of chemical defences in young oak trees is stronger in species with high elevational ranges
Tree Physiology, 39(4), 606–614.
author keywords: climate; defences; elevation; herbivory; phenolic compounds; Quercus
MeSH headings : Altitude; Animals; Ecology; Herbivory; Host-Parasite Interactions; Moths / physiology; Phenotype; Plant Diseases / immunology; Plant Diseases / parasitology; Plant Leaves / chemistry; Plant Leaves / immunology; Plant Leaves / physiology; Quercus / chemistry; Quercus / immunology; Quercus / physiology; Tannins / metabolism
Source: ORCID
Added: March 4, 2021
2019 journal article
Identification and Characterization of the Core Rice Seed Microbiome
PHYTOBIOMES JOURNAL, 3(2), 148–157.
author keywords: endophytes; metagenomics; microbiome; microorganism
Source: Web Of Science
Added: May 26, 2020
2019 journal article
Artemisinin Biosynthesis in Non-glandular Trichome Cells of Artemisia annua
Molecular Plant, 12(5), 704–714.
author keywords: Artemisia annua; artemisinin; glandular trichome; non-glandular trichome cell
MeSH headings : Artemisia annua / cytology; Artemisia annua / genetics; Artemisia annua / metabolism; Artemisia annua / physiology; Artemisinins / metabolism; Metabolic Engineering; Mutation; Pollination; Trichomes / metabolism
Sources: Crossref, ORCID
Added: February 24, 2020
2019 journal article
Dynamic modelling of the iron deficiency modulated transcriptome response in Arabidopsis thaliana roots
In Silico Plants.
author keywords: Arabidopsis thaliana; modelling; ODE; Gene Regulatory Network; plant stress response
Source: ORCID
Added: February 11, 2020
2019 journal article
Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions.
The ISME Journal.
MeSH headings : Amino Acids / genetics; Amino Acids / metabolism; Animals; Bacteria / genetics; Bacteria / metabolism; Carbonic Anhydrases / metabolism; Chemoautotrophic Growth; Genome, Bacterial / genetics; Gills / metabolism; Host Microbial Interactions; Mytilidae / metabolism; Mytilidae / microbiology; Proteomics; Symbiosis / genetics; Symbiosis / physiology
Source: ORCID
Added: January 30, 2020
2019 journal article
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis.
MBio, 10(6).
Ed(s): D. Distel & E. Ruby
author keywords: host-microbe interactions; symbiosis; holobiont; chemosynthesis; hydrothermal vents; metaproteomics
MeSH headings : Adaptation, Biological; Animal Nutritional Physiological Phenomena; Animals; Aquatic Organisms; Energy Metabolism; Metabolic Networks and Pathways; Metabolome; Microbiota; Oxidation-Reduction; Polychaeta / metabolism; Polychaeta / microbiology; Polychaeta / ultrastructure; Proteome; Proteomics / methods; Seawater; Symbiosis
Source: ORCID
Added: January 30, 2020
2019 journal article
Phylogenomics, co-evolution of ecological niche and morphology, and historical biogeography of buckeyes, horsechestnuts, and their relatives (Hippocastaneae, Sapindaceae) and the value of RAD-Seq for deep evolutionary inferences back to the Late Cretaceous
Molecular Phylogenetics and Evolution, 106726.
author keywords: Aesculus; Biogeography; ddRAD-seq; Hippocastaneae; Niche and morphological evolution; Phylogenomics
MeSH headings : Aesculus / classification; Aesculus / genetics; Bayes Theorem; Biological Evolution; Ecosystem; Fossils / history; History, Ancient; Phylogeny; Phylogeography; RNA, Plant / chemistry; RNA, Plant / classification; RNA, Plant / metabolism; RNA-Seq
Sources: Crossref, ORCID
Added: January 14, 2020
2019 article
Community turnover by composition and climatic affinity across scales in an alpine system
AMERICAN JOURNAL OF BOTANY.
author keywords: alpine ecology; beta diversity; climatic niche mean; elevation gradient; GLORIA; Great Basin; Global Observation Research Initiative in Alpine Environments; species turnover; community assembly; White Mountains
MeSH headings : Biodiversity; California; Climate Change; Ecosystem; Microclimate; Plants
Source: ORCID
Added: January 13, 2020
2019 article
tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks
PLANT JOURNAL.
author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
Source: ORCID
Added: January 13, 2020
2019 journal article
Vegetation classification at the association level under the China Vegetation Classification System: an example of six Stipa steppe formations in China
JOURNAL OF PLANT ECOLOGY, 12(6), 1009–1024.
author keywords: association; China Vegetation Classification System; consistent classification section; cluster analysis; ordination; Stipa steppe
Source: Web Of Science
Added: January 6, 2020
