Plant and Microbial Biology

College of Agriculture and Life Sciences

Works Published in 2019

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Displaying works 1 - 20 of 86 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2019 journal article

Transplanting the pathway engineering toolbox to methanogens

Current Opinion in Biotechnology, 59, 46–54.

MeSH headings : Animals; Chemoautotrophic Growth; Ecosystem; Humans; Methane; Soil
Source: ORCID
Added: August 16, 2023

2019 article

Diversity and Taxonomy of Methanogens

Lyu, Z., & Liu, Y. (2019, July). Biogenesis of Hydrocarbons, pp. 19–77.

By: Z. Lyu* & Y. Liu*

Source: ORCID
Added: August 16, 2023

2019 journal article

The Nbp35/ApbC homolog acts as a nonessential [4Fe‐4S] transfer protein in methanogenic archaea

FEBS Letters, 594(5), 924–932.

MeSH headings : Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Cell Nucleus / metabolism; Cytosol / metabolism; Gene Deletion; Iron-Sulfur Proteins / genetics; Iron-Sulfur Proteins / metabolism; Methanococcus / genetics; Methanococcus / growth & development; Methanococcus / metabolism; Phylogeny
Source: ORCID
Added: August 16, 2023

2019 journal article

A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria

MSystems, 4(2).

By: M. Choudoir*, S. Rossabi*, M. Gebert*, D. Helmig* & N. Fierer*

Ed(s): K. Whiteson

author keywords: Actinobacteria; VOC; actinomycetes; microbial interactions; natural products; volatile organic compounds
Source: ORCID
Added: September 18, 2022

2019 journal article

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes

Microbiome.

author keywords: Gut microbiome; Metaproteomics; Crohn's disease; Longitudinal analyses; Microbial metabolic function; Human microbiome
MeSH headings : Acetylglucosamine / analysis; Adult; Bacteria / genetics; Bacteria / metabolism; Crohn Disease / microbiology; Crohn Disease / surgery; Cytidine Monophosphate N-Acetylneuraminic Acid / analysis; Fatty Acids, Volatile / analysis; Feces / microbiology; Female; Gastrointestinal Microbiome / genetics; Gastrointestinal Microbiome / physiology; Humans; Male; Middle Aged; Proteome / metabolism; Proteomics; RNA, Ribosomal, 16S / genetics
Source: ORCID
Added: August 25, 2022

2019 journal article

Combining integrated systems-biology approaches with intervention-based experimental design provides a higher-resolution path forward for microbiome research

Behavioral and Brain Sciences.

Source: ORCID
Added: August 25, 2022

2019 journal article

Meiosis research in orphan and non-orphan tropical crops

Frontiers in Plant Science, 10, 1–7.

author keywords: meiosis; plant breeding; genetic diversity; tropical agriculture; food security; climate change
Source: ORCID
Added: July 11, 2022

2019 article

TheTrichoplaxmicrobiome: the simplest animal lives in an intimate symbiosis with two intracellular bacteria

Gruber-Vodicka, H. R., Leisch, N., Kleiner, M., Hinzke, T., Liebeke, M., McFall-Ngai, M., … Dubilier, N. (2019, March 5). (Vol. 3). Vol. 3.

Source: ORCID
Added: August 9, 2021

2019 article

Sulfur-oxidizing symbionts without canonical genes for autotrophic CO2fixation

Seah, B. K. B., Antony, C. P., Huettel, B., Zarzycki, J., Borzyskowski, L. S., Erb, T. J., … Gruber-Vodicka, H. R. (2019, February 5). (Vol. 2). Vol. 2.

Source: ORCID
Added: August 9, 2021

2019 article

Host-microbe interactions in the chemosyntheticRiftia pachyptilasymbiosis

Hinzke, T., Kleiner, M., Breusing, C., Felbeck, H., Häsler, R., Sievert, S. M., … Markert, S. (2019, May 27). (Vol. 5). Vol. 5.

By: T. Hinzke*, M. Kleiner n, C. Breusing*, H. Felbeck*, R. Häsler, S. Sievert*, R. Schlüter, P. Rosenstiel* ...

Source: ORCID
Added: August 9, 2021

2019 journal article

Inducibility of chemical defences in young oak trees is stronger in species with high elevational ranges

Tree Physiology, 39(4), 606–614.

author keywords: climate; defences; elevation; herbivory; phenolic compounds; Quercus
MeSH headings : Altitude; Animals; Ecology; Herbivory; Host-Parasite Interactions; Moths / physiology; Phenotype; Plant Diseases / immunology; Plant Diseases / parasitology; Plant Leaves / chemistry; Plant Leaves / immunology; Plant Leaves / physiology; Quercus / chemistry; Quercus / immunology; Quercus / physiology; Tannins / metabolism
Source: ORCID
Added: March 4, 2021

2019 journal article

Identification and Characterization of the Core Rice Seed Microbiome

PHYTOBIOMES JOURNAL, 3(2), 148–157.

By: A. Eyre n, M. Wang n, Y. Oh n & R. Dean n

author keywords: endophytes; metagenomics; microbiome; microorganism
Source: Web Of Science
Added: May 26, 2020

2019 journal article

Artemisinin Biosynthesis in Non-glandular Trichome Cells of Artemisia annua

Molecular Plant, 12(5), 704–714.

By: R. Judd n, M. Bagley n, M. Li n, Y. Zhu n, C. Lei n, S. Yuzuak n, M. Ekelöf n, G. Pu n ...

author keywords: Artemisia annua; artemisinin; glandular trichome; non-glandular trichome cell
MeSH headings : Artemisia annua / cytology; Artemisia annua / genetics; Artemisia annua / metabolism; Artemisia annua / physiology; Artemisinins / metabolism; Metabolic Engineering; Mutation; Pollination; Trichomes / metabolism
Sources: Crossref, ORCID
Added: February 24, 2020

2019 journal article

Dynamic modelling of the iron deficiency modulated transcriptome response in Arabidopsis thaliana roots

In Silico Plants.

author keywords: Arabidopsis thaliana; modelling; ODE; Gene Regulatory Network; plant stress response
Source: ORCID
Added: February 11, 2020

2019 journal article

Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions.

The ISME Journal.

MeSH headings : Amino Acids / genetics; Amino Acids / metabolism; Animals; Bacteria / genetics; Bacteria / metabolism; Carbonic Anhydrases / metabolism; Chemoautotrophic Growth; Genome, Bacterial / genetics; Gills / metabolism; Host Microbial Interactions; Mytilidae / metabolism; Mytilidae / microbiology; Proteomics; Symbiosis / genetics; Symbiosis / physiology
Source: ORCID
Added: January 30, 2020

2019 journal article

Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis.

MBio, 10(6).

By: T. Hinzke*, M. Kleiner n, C. Breusing*, H. Felbeck*, R. Häsler*, S. Sievert*, R. Schlüter*, P. Rosenstiel* ...

Ed(s): D. Distel & E. Ruby

author keywords: host-microbe interactions; symbiosis; holobiont; chemosynthesis; hydrothermal vents; metaproteomics
MeSH headings : Adaptation, Biological; Animal Nutritional Physiological Phenomena; Animals; Aquatic Organisms; Energy Metabolism; Metabolic Networks and Pathways; Metabolome; Microbiota; Oxidation-Reduction; Polychaeta / metabolism; Polychaeta / microbiology; Polychaeta / ultrastructure; Proteome; Proteomics / methods; Seawater; Symbiosis
Source: ORCID
Added: January 30, 2020

2019 journal article

Phylogenomics, co-evolution of ecological niche and morphology, and historical biogeography of buckeyes, horsechestnuts, and their relatives (Hippocastaneae, Sapindaceae) and the value of RAD-Seq for deep evolutionary inferences back to the Late Cretaceous

Molecular Phylogenetics and Evolution, 106726.

author keywords: Aesculus; Biogeography; ddRAD-seq; Hippocastaneae; Niche and morphological evolution; Phylogenomics
MeSH headings : Aesculus / classification; Aesculus / genetics; Bayes Theorem; Biological Evolution; Ecosystem; Fossils / history; History, Ancient; Phylogeny; Phylogeography; RNA, Plant / chemistry; RNA, Plant / classification; RNA, Plant / metabolism; RNA-Seq
Sources: Crossref, ORCID
Added: January 14, 2020

2019 article

Community turnover by composition and climatic affinity across scales in an alpine system

AMERICAN JOURNAL OF BOTANY.

By: B. Smithers*, M. Oldfather*, M. Koontz*, J. Bishop*, C. Bishop*, J. Nachlinger*, S. Sheth n

author keywords: alpine ecology; beta diversity; climatic niche mean; elevation gradient; GLORIA; Great Basin; Global Observation Research Initiative in Alpine Environments; species turnover; community assembly; White Mountains
MeSH headings : Biodiversity; California; Climate Change; Ecosystem; Microclimate; Plants
Source: ORCID
Added: January 13, 2020

2019 article

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks

PLANT JOURNAL.

By: R. Spurney n, L. Broeck n, N. Clark n, A. Fisher n, M. Luis Balaguer n & R. Sozzani n

author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
Source: ORCID
Added: January 13, 2020

2019 journal article

Vegetation classification at the association level under the China Vegetation Classification System: an example of six Stipa steppe formations in China

JOURNAL OF PLANT ECOLOGY, 12(6), 1009–1024.

author keywords: association; China Vegetation Classification System; consistent classification section; cluster analysis; ordination; Stipa steppe
Source: Web Of Science
Added: January 6, 2020