Works Published in 2013

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Displaying works 1 - 20 of 74 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2013 conference paper

Engineering Cercospora disease-resistant plants using fungal toxin-resistance genes

Presented at the 12th Annual NC State University Summer Undergraduate Research Symposium, Raleigh, NC.

By: N. Maldonado, E. Thomas & M. Daub

Event: 12th Annual NC State University Summer Undergraduate Research Symposium at Raleigh, NC

Source: NC State University Libraries
Added: May 21, 2022

2013 journal article

Transcriptional profiling of sclerotia formation in the soil fungus Rhizoctonia solani

Phytopathology, 103(S2), 144–145.

By: E. Thomas, S. Pakala, V. Joardar, W. Nierman & M. Cubeta

Source: NC State University Libraries
Added: May 21, 2022

2013 conference paper

Effective science instruction for young children

Presented at the MWERA Conference, Evanston, IL.

By: A. George & E. Thomas

Event: MWERA Conference at Evanston, IL

Source: NC State University Libraries
Added: May 21, 2022

2013 journal article

Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response    

Plant Physiology, 162(1), 212–224.

By: K. Hill*, D. Mathews*, H. Kim*, I. Street*, S. Wildes*, Y. Chiang*, M. Mason*, J. Alonso* ...

MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytokinins / metabolism; Gene Expression Regulation, Plant; Multigene Family; Mutagenesis, Insertional; Phenotype; Plant Growth Regulators / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Plants, Genetically Modified; RNA, Plant / genetics; Regulatory Sequences, Nucleic Acid; Seedlings / genetics; Seedlings / growth & development; Seedlings / metabolism; Signal Transduction / physiology; Transcription Factors / genetics; Transcription Factors / metabolism; Transgenes
TL;DR: The results indicate that type-B ARR expression profiles in the plant, along with posttranscriptional regulation, play significant roles in modulating their contribution to cytokinin signaling. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: Crossref, ORCID
Added: October 9, 2021

2013 journal article

Mechanisms of Metabolic Programming Toward Anthocyanin Biosynthesis in Cultured Red Arabidopsis Cells

In Vitro Cellular & Developmental Biology - Plant, 49(4), 484–485.

By: D. Xie, M. Shi & Z. Liu

Source: NC State University Libraries
Added: April 4, 2021

2013 journal article

Efficient Somatic Embryogenesis and Organogenesis of Self-Pollination <i>Artemisia annua</i> Progeny and Artemisinin Formation in Regenerated Plants

American Journal of Plant Sciences, 04(11), 2206–2217.

By: F. Alejos-Gonzalez, K. Perkins, M. Winston & D. Xie*

TL;DR: The results show the highly efficient regeneration capacity of self-pollination A. annua plants that can form a new platform to enhance the understanding of artemisinin biosynthesis and metabolic engineering. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: March 20, 2021

2013 journal article

Mechanisms Underlying Plant Sexual Dimorphism in Multi-Trophic Arthropod Communities

Ecology, 94(9), 2055–2065.

By: W. Petry*, K. Perry*, A. Fremgen*, S. Rudeen*, M. Lopez*, J. Dryburgh*, K. Mooney*

author keywords: Aphis valerianae; community genetics; dioecy; herbivory; indirect effects; interaction modification; mutualism; predation; sex-biased herbivory; tri-trophic interactions; Valeriana edulis
MeSH headings : Animals; Food Chain; Insecta / classification; Insecta / physiology; Plants / anatomy & histology; Plants / classification; Predatory Behavior
TL;DR: It is shown how weak indirect effects on predators and parasitoids (via herbivores) can be complemented by strong direct effects via common plant traits (floral resources) in contrast to the prediction of diminished plant genetic effects with increasing trophic level. (via Semantic Scholar)
Source: ORCID
Added: March 4, 2021

2013 journal article

High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants

PLoS ONE, 8(10).

By: B. Howard n, Q. Hu n, A. Babaoglu n, M. Chandra n, M. Borghi n, X. Tan n, L. He n, H. Winter-Sederoff ...

Contributors: B. Howard n, Q. Hu n, A. Babaoglu n, M. Chandra n, M. Borghi n, X. Tan n, L. He n, H. Winter-Sederoff ...

MeSH headings : Alternative Splicing / genetics; Arabidopsis / microbiology; Exons / genetics; Gene Expression Profiling; Genomics; High-Throughput Nucleotide Sequencing; Introns / genetics; Pseudomonas syringae / genetics; Pseudomonas syringae / physiology; RNA Splice Sites / genetics; Sequence Analysis, RNA; Transcription, Genetic / genetics
TL;DR: A genome-wide analysis of transcription in Arabidopsis thaliana after treatment with Pseudomonas syringae pathovar tomato finds several genes previously known to be alternatively spliced or expressed during the defense response may serve as a pool of candidate genes for regulated alternative splicing with possible biological relevance for thedefense response against invasive pathogens. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: ORCID
Added: February 11, 2021

2013 journal article

Introducing primary scientific literature to first-year undergraduate researchers

Council on Undergraduate Research on the Web, 34(4), 17–22.

By: S. Carson & E. Miller

Sources: NC State University Libraries, ORCID
Added: February 6, 2021

2013 journal article

Characterization of Flavan-3-ols and Expression of MYB and Late Pathway Genes Involved in Proanthocyanidin Biosynthesis in Foliage of Vitis bellula

Metabolites, 3(1), 185–203.

By: Y. Zhu*, Q. Peng*, C. Du*, K. Li* & D. Xie n

author keywords: Vitis bellula; proanthocyanidins; anthocyanidin reductase; leucoanthocyanidin reductase; flavan-3-ols
TL;DR: PA formation and characterization of gene expression involved in PA biosynthesis in leaves of V. bellula are reported and it is shown that both ANR and LAR branches are involved in PAs biosynthetic processes of this wild edible grape species. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 13, 2020

2013 journal article

RNAi silencing of a cytochrome P450 monoxygenase disrupts the ability of a filamentous fungus, Graphium sp., to grow on short-chain gaseous alkanes and ethers.

Biodegradation.

Michael Hyman

author keywords: Fungi; Alkane oxidation; Tetrahydrofuran; Cometabolism; Cytochrome P450
MeSH headings : Alkanes / metabolism; Biodegradation, Environmental; Cytochrome P-450 Enzyme Inhibitors; Cytochrome P-450 Enzyme System / classification; Cytochrome P-450 Enzyme System / genetics; Cytochrome P-450 Enzyme System / metabolism; Environmental Pollutants / metabolism; Ethers / metabolism; Gases; Gene Expression; Isoenzymes / antagonists & inhibitors; Isoenzymes / classification; Isoenzymes / genetics; Isoenzymes / metabolism; Oxidation-Reduction; Phylogeny; RNA, Small Interfering / genetics; RNA, Small Interfering / metabolism; Saccharomycetales / enzymology; Saccharomycetales / genetics; Sequence Analysis, DNA
TL;DR: The results of this study suggest that GSPALK1 is the enzyme that catalyzes the initial oxidation of alkanes and ethers but is not involved in the later steps of alkane or ether metabolism. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: ORCID
Added: April 28, 2020

2013 journal article

ASI:Dunaliellamarine microalgae to drop-in replacement liquid transportation fuel

Environmental Progress & Sustainable Energy, 32(4), 916–925.

By: W. Wang n, E. Allen n, A. Campos n, R. Cade n, L. Dean*, M. Dvora n, J. Immer n, S. Mixson n ...

Contributors: W. Wang n, E. Allen n, A. Campos n, R. Cade n, L. Dean*, M. Dvora n, J. Immer n, S. Mixson n ...

TL;DR: A technically feasible and scalable thermo-catalytic process to convert the lipids into replacements for liquid transportation fuels has been developed and these alkanes can be reformed into renewable diesel via conventional catalytic hydrocarbon isomerization reactions to improve cold flow properties, if desired. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: March 1, 2020

2013 journal article

A Single Amino Acid Alteration in PGR5 Confers Resistance to Antimycin A in Cyclic Electron Transport around PSI

Plant and Cell Physiology, 54(9), 1525–1534.

By: K. Sugimoto*, Y. Okegawa*, A. Tohri*, T. Long n, S. Covert*, T. Hisabori*, T. Shikanai*

Contributors: K. Sugimoto*, Y. Okegawa*, A. Tohri*, T. Long n, S. Covert*, T. Hisabori*, T. Shikanai*

author keywords: Antimycin A; Arabidopsis thaliana; Cyclic electron transport; FQR; PGR5; Pinus taeda
MeSH headings : Amino Acid Sequence; Amino Acid Substitution; Antifungal Agents / pharmacology; Antimycin A / pharmacology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Chlorophyll / metabolism; Chloroplasts / drug effects; Chloroplasts / genetics; Chloroplasts / metabolism; Drug Resistance / genetics; Electron Transport / drug effects; Genetic Complementation Test; Immunoblotting; Molecular Sequence Data; Mutation; Photosynthetic Reaction Center Complex Proteins / genetics; Photosynthetic Reaction Center Complex Proteins / metabolism; Photosystem I Protein Complex / genetics; Photosystem I Protein Complex / metabolism; Photosystem II Protein Complex / genetics; Photosystem II Protein Complex / metabolism; Pinus taeda / genetics; Plant Leaves / genetics; Plant Leaves / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plants, Genetically Modified; Sequence Homology, Amino Acid
TL;DR: It is found that ferredoxin-dependent plastoquinone reduction in ruptured chloroplasts was less sensitive to antimycin A in Arabidopsis that overaccumulated PGR5 (PROTON GRADIENT REGULATION 5) originating from Pinus taeda than that in the wild type. (via Semantic Scholar)
Source: ORCID
Added: February 11, 2020

2013 chapter

Measurement of Inositol (1,4,5) Trisphosphate in Plant Tissues by a Competitive Receptor Binding Assay

In Methods in Molecular Biology (pp. 33–41).

MeSH headings : Arabidopsis / metabolism; Binding, Competitive; Biological Assay / methods; Inositol 1,4,5-Trisphosphate / metabolism; Inositol 1,4,5-Trisphosphate Receptors / metabolism; Organ Specificity; Protein Binding; Seedlings / metabolism; Tritium
TL;DR: This chapter describes a protocol for extracting and neutralizing plant samples and performing the receptor binding assay (using a commercially available kit) and has been used effectively to monitor InsP3 levels in plant tissues of different origin and in response to different stresses. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 25, 2020

2013 chapter

Phosphatidylinositol 4-Kinase and Phosphatidylinositol 4-Phosphate 5-Kinase Assays

In Methods in Molecular Biology (pp. 163–174).

By: Y. Im n, I. Brglez n, C. Dieck n, I. Perera n & W. Boss n

MeSH headings : 1-Phosphatidylinositol 4-Kinase / metabolism; Enzyme Assays / methods; Phosphotransferases (Alcohol Group Acceptor) / metabolism; Plants / enzymology
TL;DR: Current protocols for monitoring lipid kinase-specific activity are summarized and important considerations for working with inositol lipids including different methods for substrate delivery when using recombinant proteins are identified. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 25, 2020

2013 journal article

Inquiry into chemotherapy-induced p53 activation in cancer cells as a model for teaching signal transduction

Biochemistry and Molecular Biology Education, 41(6), 419–432.

author keywords: cancer; laboratory; cell signaling; p53
MeSH headings : Antineoplastic Agents, Phytogenic / pharmacology; Biochemistry / education; Blotting, Western; Cell Line, Tumor; Cell Survival / drug effects; Drug Therapy / methods; Etoposide / pharmacology; Flow Cytometry; Humans; Medical Laboratory Personnel / education; Microscopy, Fluorescence; Neoplasms / metabolism; Neoplasms / pathology; Phosphorylation / drug effects; Problem-Based Learning / methods; Reproducibility of Results; Research / education; Research / instrumentation; Research Design / standards; Research Report / standards; Signal Transduction / drug effects; Students; Teaching / methods; Tumor Suppressor Protein p53 / metabolism; Universities
TL;DR: A new laboratory‐intensive course that teaches students the theory and techniques used to study cell signaling pathways as they conduct a hypothesis‐driven research project to elucidate the mechanism of breast cancer cell death caused by a cancer chemotherapeutic agent is developed and implemented. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Crossref, ORCID
Added: January 19, 2020

2013 journal article

Constitutive expression of the Corngrass1 microRNA in poplar affects plant architecture and stem lignin content and composition

Biomass and Bioenergy, 54, 312–321.

By: P. Rubinelli*, G. Chuck*, X. Li* & R. Meilan*

author keywords: Biofuel; Lignin; MicroRNA; Poplar; MIR156
TL;DR: It is demonstrated that over-expression in poplar of a MIR156 class miRNA has dramatic effects on plant architecture, and demonstrated that miRNA over- expression represents a novel approach to altering lignin content and composition in poplars. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 4, 2020

2013 journal article

Forward Genetics by Genome Sequencing Reveals That Rapid Cyanide Release Deters Insect Herbivory of Sorghum bicolor

Genetics, 195(2), 309–318.

By: K. Krothapalli*, E. Buescher*, X. Li*, E. Brown*, C. Chapple*, B. Dilkes*, M. Tuinstra*

MeSH headings : Animals; Chromosome Mapping; Genome, Plant; Herbivory / genetics; Herbivory / physiology; High-Throughput Nucleotide Sequencing; Hydrogen Cyanide / metabolism; Insecta / genetics; Insecta / physiology; Plant Proteins / genetics; Point Mutation; Sorghum / genetics; Sorghum / physiology; beta-Glucosidase / genetics
TL;DR: The gene cloning method substantiates the value of a sequenced genome, a strongly penetrant and easily measurable phenotype, and a workflow to pinpoint a causal mutation in crop genomes and accelerate in the discovery of gene function in the postgenomic era. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 4, 2020

2013 conference paper

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants

2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.

By: K. Merchante n, Q. Hu n, A. Stepanova n, J. Eonso & S. Heber n

Contributors: K. Merchante n, Q. Hu n, A. Stepanova n, J. Eonso & S. Heber n

TL;DR: The goal of this project is to develop genomic tools for the qualitative and quantitative characterization of the plant translatome, and it is hoped ribosome footprinting will allow researchers to correlate precisely mRNA features with translation efficiency, and open the way to investigate globally the mechanism of protein synthesis and its regulation at an unprecedented level of detail. (via Semantic Scholar)
Source: ORCID
Added: December 19, 2019

2013 journal article

Perennial Biomass Grasses and the Mason–Dixon Line: Comparative Productivity across Latitudes in the Southern Great Plains

BioEnergy Research.

Christine Hawkes

author keywords: Biofuel grasses; Switchgrass; Miscanthus; Simulation modeling
Source: ORCID
Added: December 19, 2019

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