Works Published in 2021

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Displaying works 1 - 20 of 120 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2021 article

Rapid multilocus adaptation of clonal cabbage leaf curl virus populations to Arabidopsis thaliana

Hoyer, J. S., Wilkins, O. W., Munshi, A., Wiese, E., Dubey, D., Renard, S., … Ascencio-Ibáñez, J. T. (2021, December 1).

By: J. Hoyer*, O. Wilkins n, A. Munshi n, E. Wiese n, D. Dubey*, S. Renard n, K. Mortensen n, A. Dye n ...

TL;DR: The results reinforce the fact that spontaneous mutation of this type of virus occurs rapidly and can change the majority consensus sequence of a within-plant virus population in weeks. (via Semantic Scholar)
Source: ORCID
Added: March 1, 2024

2021 journal article

Lipid remodeling in response to low phosphate is modulated by inositol pyrophosphates

The FASEB Journal.

By: C. Cridland*, E. Land n, P. Williams*, S. Hildreth*, R. Helm*, I. Perera n, G. Gillaspy*

Source: ORCID
Added: December 4, 2023

2021 journal article

Tuning Gene Expression by Phosphate in the Methanogenic Archaeon Methanococcus maripaludis

ACS Synthetic Biology, 10(11), 3028–3039.

By: T. Akinyemi*, N. Shao*, Z. Lyu*, I. Drake*, Y. Liu* & W. Whitman*

MeSH headings : Formates / metabolism; Gene Expression / drug effects; Methane / metabolism; Methanococcus / drug effects; Methanococcus / genetics; Oxidoreductases / metabolism; Phosphates / pharmacology
TL;DR: A library of differentially regulated promoters was designed and characterized based on the pst promoter, which responds to the inorganic phosphate concentration in the growth medium and resulted in significant improvements in the expression of a key methanogenic enzyme complex, methyl-coenzyme M reductase, and the potentially toxic arginine methyltransferase MmpX. (via Semantic Scholar)
Source: ORCID
Added: August 16, 2023

2021 journal article

Back to the Source: Molecular Identification of Methanogenic Archaea as Markers of Colonic Methane Production

Digestive Diseases and Sciences, 66(11), 3661–3664.

By: Z. Lyu*

MeSH headings : Archaea / genetics; Euryarchaeota; Humans; Methane
TL;DR: Diagnostic standards for overgrowth of methanogens are ambiguous, as the understanding of this phenomenon is still in its infancy, and the semi-quantitative hydrogen breath test has been proposed as an alternative to intestinal bacterial culture for SIBO diagnosis. (via Semantic Scholar)
Source: ORCID
Added: August 16, 2023

2021 journal article

Creation of a Cohort of Educational Research Practitioners: The TH!NK Researchers Program

The Journal of Faculty Development, 35(2), 10–19.

By: M. Gallardo-Williams, L. Parks & S. Carson

Sources: NC State University Libraries, ORCID
Added: February 13, 2023

2021 article

The Role of Fire in the Dynamics of Piedmont Vegetation

FIRE ECOLOGY AND MANAGEMENT PAST, PRESENT, AND FUTURE OF US FORESTED ECOSYSTEMS, Vol. 39, pp. 31–62.

By: J. Spooner*, R. Peet*, M. Schafale*, A. Weakley* & T. Wentworth n

author keywords: Indigenous peoples; Land-use change; Mesophication; Oak-hickory forest; Oak-pine forest; Prescribed fire; Savanna; Ultisols; Heliophytes; Forest management; Forest structure; Oak regeneration; Restoration; Disturbance; Southeastern North America
Source: Web Of Science
Added: October 24, 2022

2021 article

The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice

Franchini, E., Beretta, V. M., Din, I. U., Lacchini, E., Broeck, L. V., Sozzani, R., … Kater, M. M. (2021, May 3). (Vol. 5). Vol. 5.

By: E. Franchini*, V. Beretta*, I. Din*, E. Lacchini*, L. Broeck n, R. Sozzani n, G. Orozco-Arroyo*, H. Adam* ...

TL;DR: The spatio-temporal expression profiling and phenotypical analysis of CRISPR loss-of-function mutants of the homeodomain-leucine zipper transcription factor gene OsHOX14 suggest that the proposed GRN indeed serves as a valuable resource for the identification of new players involved in rice inflorescence development. (via Semantic Scholar)
Source: ORCID
Added: October 21, 2022

2021 article

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation

Thomas, H., Broeck, L. V., Spurney, R., Sozzani, R., & Frank, M. (2021, February 27). (Vol. 2). Vol. 2.

By: H. Thomas*, L. Broeck n, R. Spurney n, R. Sozzani n & M. Frank*

UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: ORCID
Added: October 21, 2022

2021 journal article

Tissue Regeneration with Hydrogel Encapsulation: A Review of Developments in Plants and Animals

BioDesign Research.

TL;DR: A background into the adoption of hydrogel encapsulation methods in the study of mammalian cells is provided, some key findings that may aid with the adopters' adoption are highlighted, and key findings of studies that have utilized these methods in plant sciences are discussed. (via Semantic Scholar)
Source: ORCID
Added: October 21, 2022

2021 article

A non-adaptive demographic mechanism for genome expansion in <i>Streptomyces</i>

Choudoir, M. J., Järvenpää, M. J., Marttinen, P., & Buckley, D. H. (2021, January 11). (Vol. 1). Vol. 1.

Contributors: M. Choudoir*

TL;DR: It is shown that non-adaptive evolutionary phenomena can explain expansion of microbial genome size, and suggested that this mechanism might explain why so many bacteria with large genomes can be found in soil. (via Semantic Scholar)
Source: ORCID
Added: September 19, 2022

2021 journal article

Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice

MSystems, 6(4).

Ed(s): J. Gilbert

author keywords: biopolitics; health disparities; social determinants of health; structural determinants of health; integrated research; microbiomes
TL;DR: Opportunities for integrating microbiology and social equity work through broadening education and training; diversifying research topics, methods, and perspectives; and advocating for evidence-based public policy that supports sustainable, equitable, and microbial wealth for all are outlined. (via Semantic Scholar)
Source: ORCID
Added: September 18, 2022

2021 journal article

Broadening the impact of plant science through innovative, integrative, and inclusive outreach

PLANT DIRECT, 5(4).

By: J. Friesner, A. Colon-Carmona*, A. Schnoes*, A. Stepanova n, G. Mason*, G. Macintosh*, H. Ullah*, I. Baxter* ...

TL;DR: This document is expected to guide the formation of community partnerships to scale up currently successful outreach programs, and lead to the design of future programs that effectively engage with a more diverse student body and citizenry. (via Semantic Scholar)
UN Sustainable Development Goal Categories
4. Quality Education (Web of Science)
Sources: Web Of Science, ORCID
Added: February 9, 2022

2021 journal article

Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

SCIENCE, 374(6575), 1577-+.

MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Differentiation; GTP-Binding Proteins / genetics; GTP-Binding Proteins / metabolism; Meristem / cytology; Phloem / cytology; Phloem / genetics; Phloem / growth & development; Phloem / metabolism; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; RNA-Seq; Signal Transduction; Single-Cell Analysis; Transcription Factors / genetics; Transcription Factors / metabolism; Transcriptome
TL;DR: The ability to connect cellular development such as lineage bifurcation and enucleation to molecular states using scRNA-seq allowed us to uncover genetic mechanisms that coordinate cellular maturation, and revealed the importance of RHO of PLANTS GTPase signaling during early phloem development when the protophloem cell lineage b ifurcates to generate metaphloem sieve element and procambium. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: February 7, 2022

2021 journal article

Scientific Note: Capsule-Seed Allometric Relationships in Ludwigia ravenii (Onagraceae), a Critically Imperiled Wetland-Obligate

CASTANEA, 86(2), 278–282.

author keywords: Endangered; seedbox; infructescence; sect. Isnardia; G1
TL;DR: This study focuses on capsule-seed allometric relationships in Ludwigia ravenii, a critically imperiled tetraploid known historically from Virginia to Florida, and preliminarily recommends that capsule collection efforts focus on capsules at least 4 mm long. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: January 31, 2022

2021 journal article

A polyketide synthase gene cluster required for pathogenicity of Pseudocercospora fijiensis on banana

PLOS ONE, 16(10), e0258981.

By: E. Thomas n, R. Noar n & M. Daub n

Ed(s): R. Wilson

MeSH headings : Ascomycota / genetics; Ascomycota / pathogenicity; Fungal Proteins / genetics; Mycoses / microbiology; Plant Diseases / microbiology; Polyketide Synthases / genetics
TL;DR: An important role for the PKS10-2 polyketide pathway in pathogenicity of Pseudocercospora fijiensis is supported, and a possible role for this pathway in disease development by other PseudOCercOSpora species is suggested. (via Semantic Scholar)
Sources: Web Of Science, Crossref, ORCID
Added: January 29, 2022

2021 journal article

A de novo regulation design shows an effectiveness in altering plant secondary metabolism

Journal of Advanced Research, 6.

By: M. Li n, X. He n, C. Hovary n, Y. Zhu n, Y. Dong n, S. Liu n, H. Xing n, Y. Liu n ...

author keywords: Arabidopsis; Alkaloid; Anthocyanin; Molecular tools; Tobacco; Transcription factor
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Nicotine / metabolism; Pancreatitis-Associated Proteins / genetics; Pancreatitis-Associated Proteins / metabolism; Secondary Metabolism / genetics
TL;DR: G-boxes, MREs, and two TF types are appropriate molecular tools for a De Novo regulation design to create a novel distant-pathway cross regulation for altering plant secondary metabolism. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: ORCID
Added: January 26, 2022

2021 article

Flavonols and dihydroflavonols inhibit the main protease activity of SARS-CoV-2 and the replication of human coronavirus 229E

Zhu, Y., Scholle, F., Kisthardt, S. C., & Xie, D.-Y. (2021, July 2). [], Vol. 7.

By: Y. Zhu n, F. Scholle n, S. Kisthardt n & D. Xie n

UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: ORCID
Added: January 26, 2022

2021 journal article

The Circadian-clock Regulates the Arabidopsis Gravitropic Response

Gravitational and Space Research.

By: J. Tolsma n, K. Ryan n, J. Torres*, J. Richards*, Z. Richardson n, E. Land n, I. Perera n, C. Doherty n

TL;DR: Gravitropic responses were disrupted in plants with disrupted circadian clocks, including plants overexpressing Circadian-clock Associated 1 (CCA1) and elf3-2, in the reorientation assay and on a 2D clinostat suggesting the variation is circadian-regulated. (via Semantic Scholar)
Source: ORCID
Added: January 6, 2022

2021 article

Species distribution models rarely predict the biology of real populations

A. Lee-Yaw, J., L. McCune, J., Pironon, S., & N. Sheth, S. (2021, December 21). ECOGRAPHY, Vol. 12.

author keywords: abundance; ecological niche; genetic diversity; habitat suitability; independent data; occurrence; performance; population growth
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: January 3, 2022

2021 journal article

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

NATURE COMMUNICATIONS, 12(1).

MeSH headings : Adult; Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Feces / microbiology; Female; Gastrointestinal Microbiome; Humans; Intestines / microbiology; Laboratories; Mass Spectrometry; Peptides / chemistry; Proteomics / methods; Workflow
TL;DR: A community-driven, multi-laboratory comparison in metaproteomics: the critical assessment of meetaproteome investigation study (CAMPI), which provides insights into the robustness of current methods, suggests further improvements to the field, and may pave the way for future community- driven metaproteinomics projects. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: January 3, 2022

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