Works Published in 2015

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Displaying works 1 - 20 of 86 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2015 conference paper

Molecular studies of anaerobic strains from Antarctica and their taxonomic identifications

In R. B. Hoover, G. V. Levin, A. Y. Rozanov, & N. C. Wickramasinghe (Eds.), Instruments, Methods, and Missions for Astrobiology XVII.

By: Z. Lyu*, E. Pikuta*, J. Hagel*, G. LaBrake*, R. Hoover* & W. Whitman

Ed(s): R. Hoover*, G. Levin, A. Rozanov & N. Wickramasinghe

TL;DR: It is proposed that strain LZ-22 is a representative of a novel genus and species, with proposed names Raineyella antarctica gen. nov, Sanguibacter gelidistatuaria sp.nov, and A7p-90m may represent a novel family within the order Bacteroidales. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: ORCID
Added: August 16, 2023

2015 conference paper

Microbiological investigation of two chondrite meteorites: Murchison and Polonnaruwa

In R. B. Hoover, G. V. Levin, A. Y. Rozanov, & N. C. Wickramasinghe (Eds.), Instruments, Methods, and Missions for Astrobiology XVII.

By: E. Pikuta*, Z. Lyu*, W. Whitman*, G. LaBrake*, J. Wallis, K. Wickramarathne*, N. Wickramasinghe*, R. Hoover*

Ed(s): R. Hoover*, G. Levin, A. Rozanov & N. Wickramasinghe*

TL;DR: The possibility that extremophilic bacteria from the lab collection might be able to metabolize organic matter in the studied meteorites was tested and the potential toxic or inhibitory growth effects were checked for different anaerobic cultures. (via Semantic Scholar)
Source: ORCID
Added: August 16, 2023

2015 journal article

Comparative genomics of three Methanocellales strains reveal novel taxonomic and metabolic features

Environmental Microbiology Reports, 2, n/a-n/a.

By: Z. Lyu* & Y. Lu*

MeSH headings : Euryarchaeota / classification; Euryarchaeota / genetics; Euryarchaeota / metabolism; Genetic Variation; Genomics; Metabolic Networks and Pathways / genetics; Phylogeny
Source: ORCID
Added: August 16, 2023

2015 journal article

The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.

Plant Physiology, 9.

Lisa Van den Broeck

MeSH headings : Amino Acids, Cyclic / pharmacology; Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Dexamethasone / pharmacology; Ethylenes / metabolism; Gene Expression Regulation, Plant / drug effects; Mannitol / adverse effects; Plant Growth Regulators / metabolism; Plant Leaves / drug effects; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / physiology; Promoter Regions, Genetic / genetics; Repressor Proteins / genetics; Repressor Proteins / metabolism; Signal Transduction; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
TL;DR: It is demonstrated that dynamic mechanisms exist to fine-tune the stress response and that ERF11 counteracts ERF6 to maintain a balance between plant growth and stress defense. (via Semantic Scholar)
Source: ORCID
Added: October 21, 2022

2015 journal article

CESA TRAFFICKING INHIBITOR Inhibits Cellulose Deposition and Interferes with the Trafficking of Cellulose Synthase Complexes and Their Associated Proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN

Plant Physiology, 167(2), 381–393.

By: N. Worden*, T. Wilkop*, V. Esteve*, R. Jeannotte*, R. Lathe*, S. Vernhettes*, B. Weimer*, G. Hicks* ...

MeSH headings : Anisotropy; Arabidopsis / cytology; Arabidopsis / enzymology; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Benzamides / pharmacology; Carrier Proteins / metabolism; Cell Compartmentation / drug effects; Cell Membrane / drug effects; Cell Membrane / metabolism; Cellulase / metabolism; Cellulose / metabolism; Dinitrobenzenes / pharmacology; Enzyme Inhibitors / pharmacology; Glucose / metabolism; Glucosyltransferases / metabolism; Green Fluorescent Proteins / metabolism; Hypocotyl / drug effects; Hypocotyl / metabolism; Membrane Proteins / metabolism; Microtubules / drug effects; Microtubules / metabolism; Multiprotein Complexes / metabolism; Protein Transport / drug effects; Sulfanilamides / pharmacology
TL;DR: A unique small molecule, CESA TRAFFICKING INHIBITOR (CESTRIN), which reduces cellulose content and alters the anisotropic growth of Arabidopsis hypocotyls and afford unique avenues to study and understand the mechanism under which PM-associated CSCs are maintained and interact with MTs and to dissect their trafficking routes in etiolated hypocotYLs. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: October 9, 2021

2015 report

Divavirus taxonomic bacteriophage group infecting Paenibacillus larvae

International Committee on the Taxonomy of Viruses.

By: E. Miller, J. Whittman, A. Kropinski & E. Areaenssesn

Source: NC State University Libraries
Added: February 6, 2021

2015 journal article

Enhanced diversity and aflatoxigenicity in interspecific hybrids ofAspergillus flavusandAspergillus parasiticus

Molecular Ecology, 24(8), 1889–1909.

By: R. Olarte n, C. Worthington n, B. Horn*, G. Moore*, R. Singh n, J. Monacell n, J. Dorner*, E. Stone n, D. Xie n, I. Carbone n

author keywords: allopolyploid; array comparative genome hybridization; flow cytometry; meiosis; population
MeSH headings : Aflatoxins / biosynthesis; Aspergillus / classification; Aspergillus / genetics; Aspergillus flavus / genetics; Comparative Genomic Hybridization; Genes, Mating Type, Fungal; Genotype; Genotyping Techniques; Hybridization, Genetic; Molecular Sequence Data; Phenotype; Phylogeny; Sequence Analysis, DNA; Sterigmatocystin / analogs & derivatives; Sterigmatocystin / biosynthesis
TL;DR: The results suggest that hybridization is an important diversifying force resulting in the genesis of novel toxin profiles in these agriculturally important fungi. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Crossref, ORCID
Added: January 24, 2021

2015 journal article

Maize Homologs of HCT, a Key Enzyme in Lignin Biosynthesis, Bind the NLR Rp1 Proteins to Modulate the Defense Response

Plant Physiology, 169.

By: G. Wang, Y. He, R. Strauch n, B. Olukolu, D. Nielsen n, X. Li n, P. Balint-Kurti*

MeSH headings : Acyltransferases / genetics; Acyltransferases / metabolism; Carrier Proteins / genetics; Carrier Proteins / metabolism; Disease Resistance / immunology; Genome-Wide Association Study; Intracellular Signaling Peptides and Proteins; Leucine-Rich Repeat Proteins; Lignin / biosynthesis; Models, Biological; NLR Proteins / genetics; NLR Proteins / metabolism; Phenotype; Phylogeny; Plant Diseases / immunology; Plant Leaves / enzymology; Plant Leaves / genetics; Plant Leaves / immunology; Plant Leaves / physiology; Plant Proteins / genetics; Plant Proteins / metabolism; Proteins / genetics; Proteins / metabolism; Quantitative Trait Loci; Signal Transduction; Zea mays / enzymology; Zea mays / genetics; Zea mays / immunology; Zea mays / physiology
TL;DR: It is shown that the lignin pathway is activated by Rp1-D21 at both the transcriptional and metabolic levels, and derive a model to explain the roles of HCT1806 and HCT4918 in R p1-mediated disease resistance. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Crossref, ORCID
Added: January 21, 2021

2015 journal article

Genetic basis of natural variation in body pigmentation in Drosophila melanogaster

Fly, 9(2), 75–81.

By: L. Dembeck n, W. Huang n, M. Carbone n & T. Mackay n

author keywords: Drosophila melanogaster Genetic Reference Panel; extreme QTL mapping; genome wide association study; quantitative genetics; replication study
MeSH headings : Abdomen; Animals; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / genetics; Drosophila melanogaster / metabolism; Female; Gene Expression Regulation / physiology; Genome-Wide Association Study; Pigmentation / genetics; Pigmentation / physiology; Polymorphism, Single Nucleotide; Quantitative Trait Loci
TL;DR: The results of an extreme quantitative trait locus (xQTL) GWA analysis of female body pigmentation in an outbred population derived from light and dark DGRP lines are described. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2015 journal article

Genetic basis of transcriptome diversity in Drosophila melanogaster

Proceedings of the National Academy of Sciences, 112(44), E6010–E6019.

By: W. Huang n, M. Carbone n, M. Magwire n, J. Peiffer n, R. Lyman n, E. Stone n, R. Anholt n, T. Mackay n

author keywords: genome-wide association; novel transcribed regions; mean eQTLs; variance eQTLs; epistasis
MeSH headings : Animals; Drosophila melanogaster / genetics; Epistasis, Genetic; Quantitative Trait Loci; Transcriptome
TL;DR: High complexity of the genetic control of gene expression is found, including widespread sexual dimorphism, highly modularized expression patterns with involvement of novel RNA transcripts, and frequent epistatic interactions among expression quantitative trait loci (QTLs) which often give rise to variance expression QTLs. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: Crossref
Added: February 24, 2020

2015 journal article

Genetic architecture of natural variation in Drosophila melanogaster aggressive behavior

Proceedings of the National Academy of Sciences, 112(27), E3555–E3563.

author keywords: Drosophila Genetic Reference Panel; genome-wide association mapping; extreme QTL mapping; advanced intercross population; epistasis
MeSH headings : Aggression; Animals; Crosses, Genetic; Drosophila Proteins / genetics; Drosophila Proteins / physiology; Drosophila melanogaster / classification; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Epistasis, Genetic; Evolution, Molecular; Genes, Insect / genetics; Genes, Insect / physiology; Genetic Variation; Genome, Insect / genetics; Humans; Inbreeding; Mutation; RNA Interference; Species Specificity
TL;DR: This work performed genome-wide association analyses using the inbred, sequenced lines of the Drosophila melanogaster Genetic Reference Panel and an advanced intercross population derived from the most and least aggressive DGRP lines to identify genes that have been previously implicated in aggressive behavior as well as many novel loci. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Crossref
Added: February 24, 2020

2015 journal article

Computational approaches to identify regulators of plant stress response using high-throughput gene expression data

Current Plant Biology, 3-4, 20–29.

By: A. Koryachko n, A. Matthiadis n, J. Ducoste n, J. Tuck n, T. Long n & C. Williams n

Contributors: A. Koryachko n, A. Matthiadis n, J. Ducoste n, J. Tuck n, T. Long n & C. Williams n

author keywords: Stress response; Transcription factors; Gene regulatory networks; Algorithms; Arabidopsis thaliana
TL;DR: This review conceptually organizes a wide variety of developed algorithms into a classification system based on desired type of output predictions to describe completed approaches in the literature, with a focus on project goals, overall path of implemented algorithms, and biological insight gained. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: ORCID, Crossref
Added: February 11, 2020

2015 journal article

Consolidated bioprocessing for biofuel production: recent advances

Energy and Emission Control Technologies, 5, 23.

By: M. Chinn n & V. Mbaneme n

TL;DR: This review highlights strain development/modification, metabolic engineering, and process improvements associated with CBP in the context of using C. thermocellum as a model biocatalyst to reduce operating expenditures and inhibitory effects for enhanced biofuels production. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 27, 2020

2015 journal article

Certain Malvaceae Plants Have a Unique Accumulation of myo-Inositol 1,2,4,5,6-Pentakisphosphate

Plants, 4(2), 267–283.

By: B. Phillippy n, I. Perera n, J. Donahue* & G. Gillaspy*

TL;DR: A method was developed to concentrate and pre-purify inositol phosphates in leaves of different plants prior to analysis, which permitted the determination of InsP6 and InsP5 concentrations in leaves as low as 10 µM and 2 µM, respectively. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 25, 2020

2015 journal article

Targeting Critical Thinking Skills in a First-Year Undergraduate Research Course †

Journal of Microbiology & Biology Education, 16(2), 148–156.

By: S. Carson n

TL;DR: A general "formula" for writing scenarios is outlined, as well as several specific scenarios created for the described course, which show that a higher level of critical thinking skills was demonstrated in research papers written by students who participated in the scenarios compared with similar students who did not participate in the scenario activities. (via Semantic Scholar)
UN Sustainable Development Goal Categories
4. Quality Education (Web of Science; OpenAlex)
Sources: Crossref, ORCID
Added: January 19, 2020

2015 journal article

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

ELife, 4.

By: W. Pope*, C. Bowman*, D. Russell*, D. Jacobs-Sera*, D. Asai*, S. Cresawn*, W. Jacobs*, R. Hendrix*, J. Lawrence*, G. Hatfull*

MeSH headings : Biomedical Research / ethics; Cooperative Behavior; DNA, Viral / genetics; Gene Flow; Genetic Variation; Genome, Viral; High-Throughput Nucleotide Sequencing; Information Dissemination; Mosaicism; Mycobacteriophages / classification; Mycobacteriophages / genetics; Mycobacterium smegmatis / virology; Phylogeny; Phylogeography; Workforce
TL;DR: To understand the population structure of phages infecting a single host strain, 627 phages of Mycobacterium smegmatis were isolated, sequenced, and compared to reveal a continuum of genetic diversity, albeit with uneven representation of different phages. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 19, 2020

2015 journal article

Genome Sequences of Six Paenibacillus larvae Siphoviridae Phages

Genome Announcements, 3(3).

By: S. Carson n, E. Bruff, W. DeFoor, J. Dums, A. Groth, T. Hatfield, A. Iyer, K. Joshi ...

TL;DR: Six sequenced and annotated genomes of Paenibacillus larvae phages isolated from the combs of American foulbrood-diseased beehives show Phage Lily is most divergent from Diva, Rani, Redbud, Shelly, and Sitara. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 19, 2020

2015 chapter

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana

In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).

Contributors: Q. Hu n, C. Merchante n, A. Stepanova n, J. Alonso n & S. Heber n

author keywords: uORF; Translation; Ribosome footprinting; Stacking; Classification; Arabidopsis thaliana
TL;DR: This paper uses ribosome footprinting together with a stacking-based classification approach to identify translated uORFs in Arabidopsis thaliana, resulting in a set of 5360 potentially translated u ORFs in 2051 genes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
4. Quality Education (OpenAlex)
Sources: ORCID, Crossref
Added: December 19, 2019

2015 journal article

Short-Term Precipitation Exclusion Alters Microbial Responses to Soil Moisture in a Wet Tropical Forest

Microbial Ecology.

Christine Hawkes

MeSH headings : Biota; Costa Rica; Rain; Rainforest; Soil / chemistry; Soil Microbiology
TL;DR: Functional patterns suggest that changes in microbial physiology may drive positive feedbacks to rising atmospheric CO2 concentrations if wet tropical forests experience longer or more intense dry seasons in the future. (via Semantic Scholar)
Source: ORCID
Added: December 19, 2019

2015 journal article

Resilience vs. historical contingency in microbial responses to environmental change

Ecology Letters.

Christine Hawkes

author keywords: Acclimation; acclimatisation; adaptation; climate change; competition; dormancy; ecosystem function; legacy; microbial community; plasticity
MeSH headings : Biological Evolution; Climate Change; Ecology / methods; Ecosystem; Models, Theoretical; Soil / chemistry; Soil Microbiology
TL;DR: By modelling microbial population responses to environmental change, it is demonstrated that historical environments can constrain soil function with the degree of constraint depending on the magnitude of change in the context of the prior environment. (via Semantic Scholar)
Source: ORCID
Added: December 19, 2019

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