Modeling the Living Embryo

Intelligent Beam Optimization for Light-Sheet Fluorescence Microscopy through Deep Learning

INTELLIGENT COMPUTING, 3.

The people behind the papers - Julia Grzymkowski and Nanette Nascone-Yoder

Grzymkowski, J., & Nascone-Yoder, N. (2024, January). DEVELOPMENT, Vol. 151.

Developmental regulation of cellular metabolism is required for intestinal elongation and rotation

DEVELOPMENT, 151(1).

Morphoelastic models discriminate between different mechanisms of left-right asymmetric stomach morphogenesis

CELLS & DEVELOPMENT, 177.

Rare variants in <i>CAPN2</i> increase risk for isolated hypoplastic left heart syndrome

HUMAN GENETICS AND GENOMICS ADVANCES, 4(4).

Deep learning-based adaptive optics for light sheet fluorescence microscopy

BIOMEDICAL OPTICS EXPRESS, 14(6), 2905–2919.

Bulk and mosaic deletions of Egfr reveal regionally defined gliogenesis in the developing mouse forebrain

IScience, 26(3), 106242.

COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains

CELL REPORTS METHODS, 3(4).

Normal Table of Xenopus development: a new graphical resource

DEVELOPMENT, 149(14).

Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning

BIOMEDICAL OPTICS EXPRESS, 13(2), 888–901.

Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain

Muthusamy, N., Williams, T. I., O'Toole, R., Brudvig, J. J., Adler, K. B., Weimer, J. M., … Ghashghaei, H. T. (2022, January 24). GEROSCIENCE, Vol. 1.

Detection and classification of neurons and glial cells in the MADM mouse brain using RetinaNet

PLOS ONE, 16(9).

Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publishers note (vol 12, pg 5214, 2021)

LI, C., Moatti, A., Zhang, X., Ghashghaei, H. T., & Greenbaum, A. (2022, January 1). BIOMEDICAL OPTICS EXPRESS, Vol. 13, pp. 373–373.

Single-minded 2 is required for left-right asymmetric stomach morphogenesis

DEVELOPMENT, 148(17).

Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy

BIOMEDICAL OPTICS EXPRESS, 12(8), 5214–5226.

The twists and turns of left-right asymmetric gut morphogenesis

[Review of ]. DEVELOPMENT, 147(19).

Sp2 regulates late neurogenic but not early expansive divisions of neural stem cells underlying population growth in the mouse cortex

DEVELOPMENT, 147(4).

The people behind the papers - Caroline Johnson and Troy Ghashghaei

Johnson, C., & Ghashghaei, T. (2020, February). DEVELOPMENT, Vol. 147.

Ependyma-expressed CCN1 restricts the size of the neural stem cell pool in the adult ventricular-subventricular zone

EMBO JOURNAL, 39(5).

Exome sequencing of family trios from the National Birth Defects Prevention Study: Tapping into a rich resource of genetic and environmental data

BIRTH DEFECTS RESEARCH, 111(20), 1618–1632.

Vangl2 coordinates cell rearrangements during gut elongation

DEVELOPMENTAL DYNAMICS, 248(7), 569–582.

To scratch an itch: Establishing a mouse model to determine active brain areas involved in acute histaminergic itch

IBRO Reports, 5, 67–73.

MARCKS regulates neuritogenesis and interacts with a CDC42 signaling network

SCIENTIFIC REPORTS, 8.

Foxj1 expressing ependymal cells do not contribute new cells to sites of injury or stroke in the mouse forebrain

SCIENTIFIC REPORTS, 8.

The left-right asymmetry of liver lobation is generated by Pitx2c-mediated asymmetries in the hepatic diverticulum

DEVELOPMENTAL BIOLOGY, 439(2), 80–91.