Recent Works
search all worksSorted by most recent date added to the index first, which may not be the same as publication date order.
2024 journal article
Intelligent Beam Optimization for Light-Sheet Fluorescence Microscopy through Deep Learning
INTELLIGENT COMPUTING, 3.
2024 article
The people behind the papers - Julia Grzymkowski and Nanette Nascone-Yoder
Grzymkowski, J., & Nascone-Yoder, N. (2024, January). DEVELOPMENT, Vol. 151.

2024 journal article
Developmental regulation of cellular metabolism is required for intestinal elongation and rotation
DEVELOPMENT, 151(1).

2024 journal article
Morphoelastic models discriminate between different mechanisms of left-right asymmetric stomach morphogenesis
CELLS & DEVELOPMENT, 177.

2023 journal article
Rare variants in <i>CAPN2</i> increase risk for isolated hypoplastic left heart syndrome
HUMAN GENETICS AND GENOMICS ADVANCES, 4(4).

2023 journal article
Deep learning-based adaptive optics for light sheet fluorescence microscopy
BIOMEDICAL OPTICS EXPRESS, 14(6), 2905–2919.

2023 journal article
Bulk and mosaic deletions of Egfr reveal regionally defined gliogenesis in the developing mouse forebrain
IScience, 26(3), 106242.

2023 journal article
COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains
CELL REPORTS METHODS, 3(4).

2022 journal article
Normal Table of Xenopus development: a new graphical resource
DEVELOPMENT, 149(14).

2022 journal article
Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning
BIOMEDICAL OPTICS EXPRESS, 13(2), 888–901.

2022 article
Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain
Muthusamy, N., Williams, T. I., O'Toole, R., Brudvig, J. J., Adler, K. B., Weimer, J. M., … Ghashghaei, H. T. (2022, January 24). GEROSCIENCE, Vol. 1.
Contributors: N. Muthusamy n, T. Williams n , R. O’Toole *, J. Brudvig *, K. Adler n, J. Weimer *, D. Muddiman n , H. Ghashghaei n

2021 journal article
Detection and classification of neurons and glial cells in the MADM mouse brain using RetinaNet
PLOS ONE, 16(9).

2022 article
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publishers note (vol 12, pg 5214, 2021)
LI, C., Moatti, A., Zhang, X., Ghashghaei, H. T., & Greenbaum, A. (2022, January 1). BIOMEDICAL OPTICS EXPRESS, Vol. 13, pp. 373–373.

2021 journal article
Single-minded 2 is required for left-right asymmetric stomach morphogenesis
DEVELOPMENT, 148(17).

2021 journal article
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy
BIOMEDICAL OPTICS EXPRESS, 12(8), 5214–5226.

2020 review
The twists and turns of left-right asymmetric gut morphogenesis
[Review of ]. DEVELOPMENT, 147(19).

2020 journal article
Sp2 regulates late neurogenic but not early expansive divisions of neural stem cells underlying population growth in the mouse cortex
DEVELOPMENT, 147(4).

2020 article
The people behind the papers - Caroline Johnson and Troy Ghashghaei
Johnson, C., & Ghashghaei, T. (2020, February). DEVELOPMENT, Vol. 147.

2020 journal article
Ependyma-expressed CCN1 restricts the size of the neural stem cell pool in the adult ventricular-subventricular zone
EMBO JOURNAL, 39(5).

2019 journal article
Exome sequencing of family trios from the National Birth Defects Prevention Study: Tapping into a rich resource of genetic and environmental data
BIRTH DEFECTS RESEARCH, 111(20), 1618–1632.

2019 journal article
Vangl2 coordinates cell rearrangements during gut elongation
DEVELOPMENTAL DYNAMICS, 248(7), 569–582.

2018 journal article
To scratch an itch: Establishing a mouse model to determine active brain areas involved in acute histaminergic itch
IBRO Reports, 5, 67–73.

2018 journal article
MARCKS regulates neuritogenesis and interacts with a CDC42 signaling network
SCIENTIFIC REPORTS, 8.

2018 journal article
Foxj1 expressing ependymal cells do not contribute new cells to sites of injury or stroke in the mouse forebrain
SCIENTIFIC REPORTS, 8.

2018 journal article
The left-right asymmetry of liver lobation is generated by Pitx2c-mediated asymmetries in the hepatic diverticulum
DEVELOPMENTAL BIOLOGY, 439(2), 80–91.
