Works Published in 2007
Displaying works 361 - 380 of 470 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2007 journal article
Quantifying the impact of protein tertiary structure on molecular evolution
MOLECULAR BIOLOGY AND EVOLUTION, 24(8), 1769–1782.
author keywords: molecular evolution; protein structure impact; Gene Ontology; MCMC; Bayes factor
MeSH headings : Bayes Theorem; Computational Biology; Computer Simulation; Data Interpretation, Statistical; Evolution, Molecular; Protein Structure, Tertiary; Proteins / chemistry; Proteins / genetics; Sequence Alignment
TL;DR:
Although their influences on rates of evolution vary among protein families, it is found that the mean impacts of solvent accessibility and pairwise interactions are about the same.
(via Semantic Scholar)
academic.oup.com (publisher PDF)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Population genetics without intraspecific data
MOLECULAR BIOLOGY AND EVOLUTION, 24(8), 1667–1677.
author keywords: dependence among sites; fixation probability; protein structure; RNA structure
MeSH headings : Animals; Annexin A5 / genetics; Computational Biology; Computer Simulation; Evolution, Molecular; Genetic Variation; Genetics, Population; Likelihood Functions; Mice; Models, Biological; Models, Genetic; Nucleic Acid Conformation; Phenotype; Phylogeny; RNA / chemistry; RNA / genetics; Rats; Selection, Genetic
TL;DR:
It is argued that statistical fit to data should not be the sole criterion for assessing models of sequence change, and a good interspecific model should also yield a clear and biologically plausible population genetic interpretation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Polychlorinated Biphenyl Exposure Causes Gonadal Atrophy and Oxidative Stress in Corbicula fluminea Clams
Toxicologic Pathology, 35(3), 356–365.
author keywords: PCB; polychlorinated biphenyl; oxidative stress; gonadal atrophy; Corbicula clams; Aroclor; antioxidant
MeSH headings : Animals; Aroclors / toxicity; Biomarkers / analysis; Corbicula; Dose-Response Relationship, Drug; Gonads / drug effects; Gonads / pathology; Oxidative Stress / drug effects; Polychlorinated Biphenyls / toxicity; Random Allocation; Time Factors; Water Pollutants, Chemical / toxicity
TL;DR:
It is indicated that oxidative mechanisms play a significant role in the decreased health of these clams due to exposure to Aroclor 1260, and changes in the gonads of exposed clams suggest that a serious threat to bivalve reproduction exists due to PCB exposure.
(via Semantic Scholar)
Sources: Web Of Science, Crossref, NC State University Libraries
Added: August 6, 2018
2007 journal article
Marking of peripheral T-lymphocytes by retroviral transduction and transplantation of CD34(+) cells in a canine X-linked severe combined immunodeficiency model
VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY, 117(3-4), 183–196.
author keywords: ex vivo gene therapy; hematopoietic progenitor cells; retroviral gene transfer; CD34(+)
MeSH headings : Animals; Antigens, CD34 / analysis; Bone Marrow Transplantation; Dogs; Flow Cytometry; Genetic Vectors; Green Fluorescent Proteins / genetics; Polymerase Chain Reaction; T-Lymphocytes / immunology; Transduction, Genetic; X-Linked Combined Immunodeficiency Diseases / immunology; X-Linked Combined Immunodeficiency Diseases / therapy
TL;DR:
Marking experiments demonstrate that the transduction protocol did not abolish the lymphoid engraftment capability of ex vivo transduced canine CD34(+) cells and supports the potential utility of the MSCV retroviral vector for gene transfer to XSCID affected canine hematopoietic progenitor cells (HPC).
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Kinetics of complexin binding to the SNARE complex: Correcting single molecule FRET measurements for hidden events
BIOPHYSICAL JOURNAL, 93(6), 2178–2187.
MeSH headings : Animals; Binding Sites; Biophysical Phenomena; Biophysics; Fluorescence Resonance Energy Transfer; In Vitro Techniques; Kinetics; Ligands; Liposomes; Microscopy, Fluorescence; Models, Molecular; Multiprotein Complexes; Nerve Tissue Proteins / chemistry; Nerve Tissue Proteins / genetics; Nerve Tissue Proteins / metabolism; Protein Binding; Rats; Recombinant Fusion Proteins / chemistry; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; SNARE Proteins / chemistry; SNARE Proteins / metabolism
TL;DR:
These rate constants provide a quantitative framework for modeling of the cascade of reactions underlying exocytosis of SNARE complexes and establish a general approach for improving single-molecule measurements of intermolecular binding kinetics.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
7. Affordable and Clean Energy
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 personal communication
Interpreting sequences from mastodon and T-rex
Asara, J. M., Garavelli, J. S., Slatter, D. A., Schweitzer, M. H., Freimark, L. M., Phillips, M., & Cantley, L. C. (2007, September 7).
MeSH headings : Amino Acid Sequence; Animals; Bone and Bones / chemistry; Collagen / chemistry; Dinosaurs; Elephants; Fossils; Glycine / chemistry; Mass Spectrometry; Molecular Sequence Data; Proline / chemistry; Tandem Mass Spectrometry
TL;DR:
It is reported that collagen proteins from well-preserved ancient fossil bones from a 160,000- to 600,000 year-old mastodon and a 68-million-year-old T. rex can be extracted and sequenced by mass spectrometry.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 journal article
Instability of slip flow in a channel occupied by a hyperporous medium
Journal of Porous Media, 10(5), 435–442.
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Increasing plasma membrane phosphatidylinositol(4,5)bisphosphate biosynthesis increases phosphoinositide metabolism in Nicotiana tabacum
PLANT CELL, 19(5), 1603–1616.
MeSH headings : Basal Metabolism; Calcium / metabolism; Cell Membrane / enzymology; Cell Membrane / metabolism; Cell Respiration; Green Fluorescent Proteins / metabolism; Humans; Inositol 1,4,5-Trisphosphate / metabolism; Lipid Metabolism; Phosphatidylinositol 4,5-Diphosphate / biosynthesis; Plant Proteins / metabolism; Plants, Genetically Modified; Protein Transport; Recombinant Fusion Proteins / metabolism; Subcellular Fractions / metabolism; Tobacco / cytology; Tobacco / enzymology; Tobacco / genetics; Tobacco / metabolism; Tritium
TL;DR:
It is demonstrated that PIPK is flux limiting and that this high rate of PI metabolism increased the energy demands in transgenic tobacco cells.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 review
Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice(1[W][OA])
[Review of ]. Plant Physiology, 144(4), 1697–1714.
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Forced convection with laminar pulsating flow in a channel or tube
INTERNATIONAL JOURNAL OF THERMAL SCIENCES, 46(6), 551–560.
author keywords: forced convection; pulsating flow; weak singularity
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Expressed sequence tags from Phytophthora sojae reveal genes specific to development and infection
MOLECULAR PLANT-MICROBE INTERACTIONS, 20(7), 781–793.
author keywords: effectors
MeSH headings : Cluster Analysis; Expressed Sequence Tags; Gene Expression Profiling; Gene Library; Genes, Fungal; Molecular Sequence Data; Phytophthora / genetics; Phytophthora / growth & development; Sequence Analysis, DNA; Soybeans / microbiology
TL;DR:
Six unique expressed sequence tag libraries were generated from four developmental stages of Phytophthora sojae and revealed genes that were specific to or highly represented in particular growth conditions and life stages, indicating that, during infection, the pathogen derives most of its carbon and energy via glycolysis of sugars in the plant.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 journal article
Disruption of a maize 9-lipoxygenase results in increased resistance to fungal pathogens and reduced levels of contamination with mycotoxin fumonisin
MOLECULAR PLANT-MICROBE INTERACTIONS, 20(8), 922–933.
Contributors: X. Gao *, W. Shim*, C. Göbel*, S. Kunze*, I. Feussner *, R. Meeley *, P. Balint-Kurti n , M. Kolomiets *
author keywords: lipid peroxidation
MeSH headings : Alleles; Fumonisins / analysis; Fungi / growth & development; Fungi / metabolism; Fungi / pathogenicity; Immunity, Innate / genetics; Lipoxygenase / genetics; Lipoxygenase / physiology; Mutation; Plant Diseases / genetics; Plant Proteins / genetics; Plant Proteins / physiology; Zea mays / enzymology; Zea mays / genetics; Zea mays / microbiology
TL;DR:
Data suggest that oxylipin metabolism mediated by a specific plant 9-LOX isoform is required for fungal pathogenesis, including disease development and production of spores and mycotoxins.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2007 journal article
A P60 mutant of Listeria monocytogenes is impaired in its ability to cause infection in intragastrically inoculated mice
MICROBIAL PATHOGENESIS, 42(5-6), 237–241.
author keywords: Listeria monocytogenes; gastrointestinal; P60; listeriosis; mice
MeSH headings : Animals; Bacterial Proteins / genetics; Caco-2 Cells; Female; Gastrointestinal Diseases / microbiology; Gastrointestinal Tract / microbiology; Humans; Listeria monocytogenes / genetics; Listeria monocytogenes / pathogenicity; Listeriosis / microbiology; Mice; Mice, Inbred A; Mutation
TL;DR:
Findings indicate that P60 is required for maximal virulence of L. monocytogenes in the gastrointestinal tract of mice.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Use of an insect cell culture growth medium to isolate bacteria from horses with effusive, fibrinous pericarditis: A preliminary study
VETERINARY MICROBIOLOGY, 121(1-2), 177–181.
author keywords: insect cell culture medium; mare reproductive loss syndrome; 16S rDNA; DNA sequencing
MeSH headings : Animals; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Infections / microbiology; Bacterial Infections / pathology; Bacterial Infections / veterinary; Culture Media; Culture Techniques / veterinary; Disease Outbreaks / veterinary; Horse Diseases / microbiology; Horse Diseases / pathology; Horses; Insecta / cytology; Insecta / microbiology; Kentucky / epidemiology; Pericardial Effusion / microbiology; Pericardial Effusion / pathology; Pericarditis / microbiology; Pericarditis / pathology; Pericarditis / veterinary; Pilot Projects; Retrospective Studies
TL;DR:
Bacterial isolation from equine pericardial fluid samples was attempted using an insect cell culture growth medium (ICCGM), but a similar or novel caterpillar-associated bacteria was not identified; however, use of an ICCGM might enhance isolation of bacteria from equines pericARDial fluid.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2007 journal article
Transgenic cotton over-producing spinach sucrose phosphate synthase showed enhanced leaf sucrose synthesis and improved fiber quality under controlled environmental conditions
PLANT MOLECULAR BIOLOGY, 63(6), 815–832.
author keywords: carbon partitioning; cotton fiber quality; environmental stress; sucrose, starch and cellulose metabolism; transgenic cotton
MeSH headings : Blotting, Western; Carbon Dioxide / pharmacology; Carbon Radioisotopes; Cotton Fiber; Gene Expression Regulation, Plant / drug effects; Gene Expression Regulation, Plant / radiation effects; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Gossypium / genetics; Gossypium / growth & development; Gossypium / metabolism; Light; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / metabolism; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction; Spinacia oleracea / enzymology; Spinacia oleracea / genetics; Starch / metabolism; Sucrose / metabolism; Temperature
TL;DR:
A family of transgenic cotton plants was produced that over-expressed spinach sucrose-phosphate synthase (SPS) because of its role in regulation of sucrose synthesis in photosynthetic and heterotrophic tissues and had higher fiber micronaire and maturity ratio associated with greater thickness of the cellulosic secondary wall.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 journal article
The role of p38 mitogen-activated kinase (MAPK) in the mechanism regulating cyclooxygenase gene expression in equine leukocytes
VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY, 118(3-4), 294–303.
author keywords: other animals; endotoxin shock; lipopolysaccharide; inflammation
MeSH headings : Animals; Cells, Cultured; Cyclooxygenase 2 / genetics; Cyclooxygenase 2 / metabolism; Enzyme Activation; Epoprostenol / metabolism; Gene Expression Regulation, Enzymologic; Horses / blood; Horses / genetics; Imidazoles / pharmacology; Leukocytes / metabolism; Prostaglandins / genetics; Prostaglandins / metabolism; Pyridines / pharmacology; RNA, Messenger / metabolism; Time Factors; p38 Mitogen-Activated Protein Kinases / metabolism
TL;DR:
It is concluded that p 38 MAPK is essential for LPS-induced COX-2 expression suggesting that p38 MAPK are a potential target for anti-inflammatory therapy during equine endotoxemia.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2007 journal article
The phylogenetic relationships of flies in the superfamily Empidoidea (Insecta : Diptera)
MOLECULAR PHYLOGENETICS AND EVOLUTION, 43(3), 701–713.
author keywords: diptera; dance fly; phylogeny; systematics; DNA; protein
MeSH headings : Animals; Carbamoyl-Phosphate Synthase (Ammonia) / genetics; Diptera / classification; Diptera / genetics; Evolution, Molecular; Molecular Sequence Data; Phylogeny; RNA, Ribosomal, 28S / genetics; Sequence Analysis, DNA
TL;DR:
A molecular phylogenetic study of the Empidoidea, a diverse group of 10,000 species of true flies, to reconstruct a taxonomically complete and robustly supported phylogeny for the group and to use this information to assess several competing classifications for the clade.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 journal article
The Magnaporthe grisea snodprot1 homolog, MSPI, is required for virulence
FEMS MICROBIOLOGY LETTERS, 273(2), 157–165.
author keywords: rice blast; hydrophobin; pathogenicity; rice; infection
MeSH headings : Blotting, Western; Fungal Proteins / chemistry; Fungal Proteins / genetics; Fungal Proteins / physiology; Gene Deletion; Hordeum / microbiology; Magnaporthe / genetics; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Molecular Sequence Data; Mutation; Recombinant Fusion Proteins / physiology; Sequence Alignment; Sequence Analysis, Protein; Virulence / genetics; Virulence Factors / chemistry; Virulence Factors / genetics; Virulence Factors / physiology
TL;DR:
This is the first report to the authors' knowledge that directly implicates a snodprot1 protein as a virulence factor in the rice blast fungus Magnaporthe grisea.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 journal article
Temporal and spatial variability in stable isotope compositions of a freshwater mussel: implications for biomonitoring and ecological studies
OECOLOGIA, 152(1), 140–150.
author keywords: Elliptio complanata; delta N-15; delta C-13; nutrient loading; tissue turnover; isotopic baseline
MeSH headings : Animals; Carbon Isotopes; Ecology; Environmental Monitoring; Food Chain; Geography; Hemolymph / chemistry; Nitrogen Isotopes; North Carolina; Rivers / chemistry; Unionidae / chemistry; Unionidae / metabolism
TL;DR:
It is concluded that bivalves serve best as biomonitors of chronic, rather than acute, fluctuations in stream nutrient loads, and initial evidence of their suitability as time-integrated isotopic baselines for community studies is provided.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 journal article
Temperature effect on skin adhesion, cell wall enzyme activity, lignin content, anthocyanins, growth parameters, and periderm histochemistry of sweetpotato
Journal of the American Society for Horticultural Science, 132(5), 729–738.
Source: NC State University Libraries
Added: August 6, 2018
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