Works Published in 2022
Displaying works 61 - 80 of 92 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2022 article
Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae
Shin, H., Park, J. E., Park, H. R., Choi, W. L., Yu, S. H., Koh, W., … Huh, J. H. (2022, April 28). NEW PHYTOLOGIST, Vol. 4.
author keywords: allopolyploidy; Brassicaceae; DNA methylation; epigenome; genome divergence; hybrid; xBrassicoraphanus
MeSH headings : Brassicaceae / genetics; DNA Methylation / genetics; Genome, Plant; Hybridization, Genetic
TL;DR:
The results demonstrate that hybrid genome stabilization and transcription compatibility necessitate epigenome landscape adjustment and rewiring of cis–trans interactions, which suggests that a certain extent of genome divergence facilitates hybridization across species, which may explain the great diversification and expansion of angiosperms during evolution.
(via Semantic Scholar)
www.ncbi.nlm.nih.gov (repository)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: May 10, 2022
2022 journal article
A de novo regulation design shows an effectiveness in altering plant secondary metabolism
JOURNAL OF ADVANCED RESEARCH, 37, 43–60.
author keywords: Arabidopsis; Alkaloid; Anthocyanin; Molecular tools; Tobacco; Transcription factor
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Nicotine / metabolism; Pancreatitis-Associated Proteins / genetics; Pancreatitis-Associated Proteins / metabolism; Secondary Metabolism / genetics
TL;DR:
G-boxes, MREs, and two TF types are appropriate molecular tools for a De Novo regulation design to create a novel distant-pathway cross regulation for altering plant secondary metabolism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: May 2, 2022
2022 article
Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties
Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Bak, F., Guan, Y., Horn Herms, C., … Nicolaisen, M. H. (2022, April 13). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 4.
TL;DR:
16S amplicon sequencing data from 3 rhizocompartments of 4 wheat cultivars grown under controlled greenhouse conditions observed that rhizOCompartments and cultivar affect the community composition.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: May 2, 2022
2022 journal article
Identification of Transcription Factors Regulating SARS-CoV-2 Tropism Factor Expression by Inferring Cell-Type-Specific Transcriptional Regulatory Networks in Human Lungs
VIRUSES-BASEL, 14(4).
author keywords: SARS-CoV-2; single-cell RNA-seq; differential network analysis
MeSH headings : COVID-19; Gene Regulatory Networks; Humans; Lung / metabolism; SARS-CoV-2 / genetics; Transcription Factors / genetics; Viral Tropism / genetics
TL;DR:
This work constructed transcriptional regulatory networks (TRNs) controlling SARS-CoV-2 tropism factors for healthy donors and COVID-19 patients using lung single-cell RNA-sequencing (scRNA-seq) data and found that the altered regulatory role of TFs in the same cell types of healthy and Sars-Cov-2-infected networks may be partially responsible for differential tropism factor expression.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: May 2, 2022
2022 journal article
RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry
FRONTIERS IN GENETICS, 12.
author keywords: Colletotrichum acutatum; Colletotrichum gloeosporioides; Fragaria x ananassa; rate-reducing resistance; gene regulatory network
TL;DR:
Comparison transcriptome analyses and Gene regulatory network inference analysis revealed candidate transcription factors (TFs) such as GATA5 and MYB-10, and their downstream targets were upregulated in resistant interactions, which can provide valuable insights into transcriptional changes during resistant and susceptible interactions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: April 25, 2022
2022 journal article
Considerations for constructing a protein sequence database for metaproteomics
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 20, 937–952.
Contributors: J. Blakeley-Ruiz n
author keywords: Metaproteome; Metagenomics; Microbiome; Microbial community; Multi-omics; Microbiota; Microbial ecology
TL;DR:
An overview of existing strategies for database construction and the relevant studies that have sought to test and validate these strategies is provided, and a decision tree and best practices for choosing and implementing database construction strategies are provided.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: April 25, 2022
2022 article
BTS Is a Negative Regulator for the Cellular Energy Level and the Expression of Energy Metabolism-Related Genes Encoded by Two Organellar Genomes in Leaf Tissues
Choi, B., Hyeon, D. Y., Lee, J., Long, T. A., Hwang, D., & Hwang, I. (2022, April 15). MOLECULES AND CELLS, Vol. 4.
author keywords: Arabidopsis thaliana; BRUTUS; energy metabolism; shoot tissues
MeSH headings : Adenosine Diphosphate / metabolism; Adenosine Triphosphate / metabolism; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Energy Metabolism / genetics; Gene Expression Regulation, Plant; Plant Leaves / genetics; Plant Leaves / metabolism; Plant Roots / genetics; Plant Roots / metabolism; Plant Shoots; Starch / metabolism; Ubiquitin-Protein Ligases / metabolism
TL;DR:
The role of BTS is expanded to regulation of energy metabolism in the shoot in addition to its role of iron deficiency response in roots through Comparative transcriptome analysis with shoot and root tissues.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
7. Affordable and Clean Energy
(OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: April 20, 2022
2022 journal article
Tandem C2 domains mediate dynamic organelle targeting of a DOCK family guanine nucleotide exchange factor
JOURNAL OF CELL SCIENCE, 135(7).
author keywords: DOCK; Rac/Rho-of-plants; Lipid binding; Organelle association; Small GTPases
MeSH headings : C2 Domains; Cytokinesis; Guanine Nucleotide Exchange Factors / metabolism; Monomeric GTP-Binding Proteins / metabolism; Organelles / metabolism
TL;DR:
Mechanistic insight is provided into how DOCK GEFs sense compositional and biophysical membrane properties at the interface of two organelle systems and an evolutionarily conserved and essential localization determinant is uncovered named SPIKE1.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: April 14, 2022
2022 review
Genetic Characteristics and Metabolic Interactions between Pseudocercospora fijiensis and Banana: Progress toward Controlling Black Sigatoka
[Review of ]. PLANTS-BASEL, 11(7).
author keywords: black Sigatoka; cell wall; dispensable chromosomes; Dothideomycetes; effectors; genomics; host resistance; pathogenicity; secondary metabolism
TL;DR:
P. fijiensis has been identified as having high evolutionary potential, given its large genome size, ability to reproduce both sexually and asexually, and long-distance spore dispersal, and multiple control measures are needed for the sustainable control of black Sigatoka disease.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: April 5, 2022
2022 article
Genetic Characteristics and Metabolic Interactions between Pseudocercospora fijiensis and Banana: Progress toward Controlling Black Sigatoka
Noar, R. D., & Thomas, E. (2022, March 31). Plants.
Source: ORCID
Added: March 31, 2022
2022 journal article
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination
Food Chemistry, 386, 30, 13274.
author keywords: Metabolomic; Capsicum; OPLS-DA; SUS-plot; Biomarkers; Peruvian native chili peppers
MeSH headings : Biomarkers; Capsicum; Fruit; Metabolomics; Peru; Vegetables
Source: ORCID
Added: March 29, 2022
2022 article
Microbes, memory and moisture: Predicting microbial moisture responses and their impact on carbon cycling
Evans, S., Allison, S., & Hawkes, C. (2022, March 20). FUNCTIONAL ECOLOGY, Vol. 3.
author keywords: carbon; drought; legacy; microbial communities; modelling; rainfall; respiration; soil
TL;DR:
Soil moisture is a major driver of microbial activity and thus, of the release of carbon into the Earth's atmosphere, and models assume that the response to moisture response functions are a poorly constrained aspect of C models.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science; OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: March 28, 2022
2022 journal article
Early detection of plant virus infection using multispectral imaging and spatial-spectral machine learning
SCIENTIFIC REPORTS, 12(1).
MeSH headings : Disease Resistance; Early Diagnosis; Machine Learning; Manihot / virology; Photometry / instrumentation; Photometry / methods; Plant Diseases / virology; Plant Viruses / genetics; Plant Viruses / pathogenicity; Potyviridae / pathogenicity; RNA, Viral; Spectrophotometry / instrumentation; Spectrophotometry / methods; Virus Diseases / diagnosis
TL;DR:
A handheld active multispectral imaging (A-MSI) device combined with machine learning for early detection of CBSD in real-time is developed and has the potential to increase farmers’ access to healthy planting materials and reduce losses due toCBSD in Africa.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 21, 2022
2022 article
Organic solar powered greenhouse performance optimization and global economic opportunity
Ravishankar, E., Booth, R. E., Hollingsworth, J. A., Ade, H., Sederoff, H., DeCarolis, J. F., & Brendan T. O'Connor. (2022, March 10). ENERGY & ENVIRONMENTAL SCIENCE, Vol. 15.
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: March 19, 2022
2022 journal article
Field-grown soybean shows genotypic variation in physiological and seed composition responses to heat stress during seed development
ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 195.
author keywords: Photosynthesis; V-cmax; Respiration; Yield; Seed composition
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 14, 2022
2022 journal article
A New Pipeline for Removing Paralogs in Target Enrichment Data
SYSTEMATIC BIOLOGY, 71(2), 410–425.
MeSH headings : Genome; High-Throughput Nucleotide Sequencing; Phylogeny
TL;DR:
The value of Hyb-Seq with data derived from the Angiosperms353 probe set for elucidating species relationships within a genus is demonstrated, and the importance of additional steps to filter paralogous genes and poorly aligned regions is argued.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 7, 2022
2022 journal article
An experimental strategy for preparing circular ssDNA virus genomes for next-generation sequencing
JOURNAL OF VIROLOGICAL METHODS, 300.
author keywords: Phi29; EquiPhi29; MiSeq; Whiteflies; Viral DNA sequencing
MeSH headings : DNA Viruses / genetics; DNA, Circular / genetics; DNA, Viral / genetics; Genome, Viral; High-Throughput Nucleotide Sequencing
TL;DR:
An improved protocol for the enhanced amplification and enrichment of begomovirus DNA for use in next generation sequencing of the viral genomes is presented and can be used to examine the viral DNA as it moves from host to vector, thus producing valuable information for viral DNA population studies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: March 7, 2022
2022 journal article
Next Steps in Integrative Biology: Mapping Interactive Processes Across Levels of Biological Organization
INTEGRATIVE AND COMPARATIVE BIOLOGY, 61(6), 2066–2074.
MeSH headings : Animals; Biology; Proteins
TL;DR:
Mapping key drivers or connections among levels of organization will provide data and leverage to model potential rule-sets by which organisms respond and adjust to perturbations at any level of biological organization.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: March 7, 2022
2022 journal article
Single-Cell-Based High-Throughput Ig and TCR Repertoire Sequencing Analysis in Rhesus Macaques
JOURNAL OF IMMUNOLOGY, 208(3), 762–771.
MeSH headings : Animals; Gene Expression Profiling; High-Throughput Nucleotide Sequencing; Immunoglobulins / genetics; Macaca mulatta; Receptors, Antigen, T-Cell, alpha-beta / genetics; Receptors, Antigen, T-Cell, gamma-delta / genetics; Single-Cell Analysis; T-Lymphocytes / immunology; Transcriptome / genetics; VDJ Exons / genetics
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: February 28, 2022
2022 article
The evolution of thermal performance in native and invasive populations of Mimulus guttatus
Querns, A., Wooliver, R., Vallejo-Marin, M., & Sheth, S. N. (2022, February 13). EVOLUTION LETTERS, Vol. 2.
author keywords: Adaptive divergence; evolutionary ecology; invasion ecology; latitudinal gradient; niche conservatism; phenotypic cline; thermal performance curve; thermal tolerance
TL;DR:
It is suggested that broad thermal tolerance, rather than rapid adaptation in the novel range, may promote invasion and is tested on populations of the yellow monkeyflower.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: February 15, 2022
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