Works Published in 2007

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Displaying works 1 - 20 of 76 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2007 journal article

The non-dosage compensated Lsp1α gene of Drosophila melanogaster escapes acetylation by MOF in larval fat body nuclei, but is flanked by two dosage compensated genes

BMC Molecular Biology, 8(1), 35.

TL;DR: The most likely explanation for why Lsp1 α is not dosage compensated is that the gene has not evolved a mechanism to independently recruit theMSL complex, possibly because of its recent evolutionary origin, and because there appears to be a low level of bound MSL complex in a nearby gene that is active in the same tissue. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 29, 2024

2007 journal article

Comprehensive Transcriptome Profiling in Tomato Reveals a Role for Glycosyltransferase in Mi-Mediated Nematode Resistance

Plant Physiology, 144(2), 1079–1092.

By: J. Schaff n, D. Nielsen n, C. Smith n, E. Scholl n & D. Bird n

MeSH headings : Animals; Feeding Behavior / physiology; Gene Expression; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Silencing; Genomics; Glycosyltransferases / metabolism; Host-Parasite Interactions / physiology; Solanum lycopersicum / enzymology; Solanum lycopersicum / genetics; Solanum lycopersicum / parasitology; Oligonucleotide Array Sequence Analysis; Plant Roots / enzymology; Plant Roots / metabolism; Plant Roots / parasitology; Reproduction / physiology; Tylenchoidea / physiology
TL;DR: The root transcriptome of the resistant and susceptible cultivars ‘Motelle’ and ‘Moneymaker’ is interrogated, providing a picture of global gene expression changes in roots during compatible and incompatible associations with RKN, and point to candidates for further investigation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (OpenAlex)
Sources: Crossref, ORCID
Added: January 25, 2021

2007 journal article

Elucidation of veA-dependent genes associated with aflatoxin and sclerotial production in Aspergillus flavus by functional genomics

Applied Microbiology and Biotechnology, 76(5), 1107–1118.

By: J. Cary*, G. OBrian n, D. Nielsen n, W. Nierman, P. Harris-Coward*, J. Yu*, D. Bhatnagar*, T. Cleveland*, G. Payne n, A. Calvo*

author keywords: Aspergillus flavus; veA; aflatoxin; sclerotia; microarray
MeSH headings : Aflatoxins / biosynthesis; Anthraquinones / metabolism; Aspergillus flavus / genetics; Aspergillus flavus / growth & development; Aspergillus flavus / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Gene Library; Genomics; Oligonucleotide Array Sequence Analysis / methods
TL;DR: Microarray technology was used to identify a subgroup of veA-dependent genes that exhibited time-dependent expression profiles similar to those of known aflatoxin biosynthetic genes or that were candidates for involvement in sclerotial production in the wild type. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 5, 2020

2007 journal article

Parenting quality, DRD4, and the prediction of externalizing and internalizing behaviors in early childhood

Developmental Psychobiology, 49(6), 619–632.

author keywords: dopamine; externalizing behavior; internalizing behavior; maternal sensitivity; parenting; gene-environment interactions
MeSH headings : Child; Child Behavior; Child, Preschool; Environment; Female; Genotype; Humans; Infant; Male; Maternal Behavior; Parent-Child Relations; Parenting; Polymorphism, Genetic / genetics; Prospective Studies; Receptors, Dopamine D4 / genetics; Socioeconomic Factors
TL;DR: Results revealed that high warm-responsive parenting was associated with decreased externalizing behavior only for African American children possessing the short polymorphism of DRD4, indicating that children may be differentially susceptible to different aspects of parenting depending on their genotype. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2007 journal article

Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the< i> Arabidopsis</i> Transcriptome

Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the< i> Arabidopsis Transcriptome. Cell, 131(7), 1340–1353.

Contributors: J. Chekanova*, B. Gregory*, S. Reverdatto*, H. Chen*, R. Kumar*, T. Hooker*, J. Yazaki*, P. Li*, N. Skiba*, Q. Peng*

MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Chromosome Mapping / methods; Exoribonucleases / genetics; Exoribonucleases / metabolism; Exosome Multienzyme Ribonuclease Complex; Gene Expression Profiling / methods; Gene Expression Regulation, Plant; Genotype; MicroRNAs / metabolism; Molecular Sequence Data; Mutation; Nuclear Proteins / metabolism; Nucleic Acid Conformation; Oligonucleotide Array Sequence Analysis; Peptide Mapping; Phenotype; Plants, Genetically Modified / metabolism; Proteomics / methods; RNA / chemistry; RNA / metabolism; RNA Interference; RNA, Messenger / metabolism; RNA, Small Interfering / metabolism; RNA, Untranslated / metabolism; Tandem Mass Spectrometry
TL;DR: It is demonstrated that as opposed to yeast and metazoans the plant exosome core possesses an unanticipated functional plasticity and a genome-wide atlas of Arabidopsis exosomes targets is presented, which will aid in illuminating new fundamental components and regulatory mechanisms of eukaryotic transcriptomes. (via Semantic Scholar)
Source: ORCID
Added: December 19, 2019

2007 journal article

The Hill–Robertson effect is a consequence of interplay between linkage, selection and drift: a commentary on ‘The effect of linkage on limits to artificial selection’ by W. G. Hill and A. Robertson

Genetics Research, 89(5-6), 309–310.

By: Z. Zeng n

MeSH headings : Alleles; Genetic Drift; Genetic Linkage; Population Density; Selection, Genetic
UN Sustainable Development Goal Categories
Source: Crossref
Added: July 20, 2019

2007 journal article

Genetic and behavioral analysis of natural variation in Drosophila melanogaster pupation position

FLY, 1(1), 23–32.

By: C. Riedl*, M. Riedl, T. Mackay* & M. Sokolowski

author keywords: Drosophila; behavior; pupation; wandering; QTL; quantitative; genetics
MeSH headings : Animals; Behavior, Animal; Chromosome Mapping; Drosophila melanogaster / physiology; Genetic Variation; Metamorphosis, Biological; Phenotype; Quantitative Trait Loci
TL;DR: The ability of larvae to integrate several internal and external environmental cues while choosing a contextually appropriate pupation site, and specifically, the variation in this ability, presents a very interesting behavioral phenotype in this highly tractable genetic model organism. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2007 patent

Regulation of quinolate phosphoribosyl transferase expression

Washington, DC: U.S. Patent and Trademark Office.

By: M. Conkling, W. Song & N. Mendu

Source: NC State University Libraries
Added: August 6, 2018

2007 patent

Methods for injecting avian eggs

Washington, DC: U.S. Patent and Trademark Office.

By: N. Mendu, M. Bland, S. Wolfe, J. Hebrank & D. Mahato

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

Human genetics: The hidden text of genome-wide associations

Current Biology, 17(21), R929–932.

By: G. Gibson & D. Goldstein

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome

NATURE PROTOCOLS, 2(11), 2910–2917.

By: . Ronan C. O'Malley, J. Alonso n, C. Kim*, T. Leisse* & J. Ecker*

Contributors: . Ronan C. O'Malley, J. Alonso n, C. Kim*, T. Leisse* & J. Ecker*

MeSH headings : Arabidopsis / genetics; Chromosome Mapping / methods; DNA Primers; DNA, Bacterial / chemistry; Genome, Plant; Mutagenesis, Insertional; Polymerase Chain Reaction / methods; Sequence Analysis, DNA; Transformation, Genetic
TL;DR: This protocol describes an adapter ligation-mediated PCR method that has been used to screen a mutant library and identify over 150,000 T-DNA insertional mutants; the method can also be applied to map individual mutants. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Diversity and divergence patterns in regulatory genes suggest differential gene flow in recently derived species of the Hawaiian silversword alliance adaptive radiation (Asteraceae)

MOLECULAR ECOLOGY, 16(19), 3995–4013.

By: A. Lawton-Rauh*, R. Robichaux* & M. Purugganan n

author keywords: adaptive radiation; allele-sharing; gene flow; Hawaiian silversword alliance; regulatory gene evolution; speciation
MeSH headings : Adaptation, Biological; Asteraceae / anatomy & histology; Asteraceae / genetics; Base Sequence; Gene Flow; Genes, Regulator; Genetic Speciation; Haplotypes; Hawaii; Molecular Sequence Data; Sequence Alignment; Sequence Analysis, DNA; Species Specificity
TL;DR: The results suggest that adaptively radiating species can exhibit contrasting allele migration rates among loci such that allele movement at specific loci may supersede genetic divergence caused by drift and that lineage divergence during adaptive radiation can be associated with population expansion. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Anti-inflammatory properties of Lactobacillus gasseri expressing manganese superoxide dismutase using the interleukin 10-deficient mouse model of colitis

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 293(4), G729–G738.

By: I. Carroll*, J. Andrus*, J. Bruno-Barcena n, T. Klaenhammer n, H. Hassan n & D. Threadgill

author keywords: probiotic; Lactobacilli; oxidative stress; inflammatory bowel disease
MeSH headings : Animals; Anti-Inflammatory Agents / therapeutic use; Colitis / drug therapy; Colitis / pathology; Colon / pathology; Cyclooxygenase 2 / metabolism; Disease Models, Animal; Immunohistochemistry; Interleukin-10 / deficiency; Lactobacillus / enzymology; Mice; Peroxidase / metabolism; Probiotics / therapeutic use; Specific Pathogen-Free Organisms; Superoxide Dismutase / biosynthesis; Superoxide Dismutase / therapeutic use
TL;DR: This study demonstrates that L. gasseri producing MnSOD has significant anti-inflammatory activity that reduces the severity of colitis in the IL-10-deficient mouse. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Mixture modeling of transcript abundance classes in natural populations

GENOME BIOLOGY, 8(6).

MeSH headings : Animals; California; Cell Line, Tumor; Drosophila melanogaster / genetics; Female; Gene Expression Profiling; Genetics, Population; Humans; Male; North Carolina; Transcription, Genetic
TL;DR: Population surveys of gene expression may complement genetical genomics as a general approach to quantifying sources of transcriptional variation by exploring the distributions of cis-acting and trans-acting factors and their relative contributions to expression of transcripts that exhibit two or more classes of abundance within populations. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Long-term neuroretinal full-thickness transplants in a large animal model of severe retinitis pigmentosa

GRAEFES ARCHIVE FOR CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY, 245(6), 835–846.

By: F. Ghosh*, K. Engelsberg*, R. English n & R. Petters n

author keywords: immune privilege; photoreceptor morphology; retinal degeneration; vitreoretinal surgery
MeSH headings : Animals; Animals, Genetically Modified; Biomarkers; Dark Adaptation; Disease Models, Animal; Electroretinography; Female; Fetal Tissue Transplantation; Fluorescent Antibody Technique, Indirect; Follow-Up Studies; Glial Fibrillary Acidic Protein / metabolism; Graft Survival / physiology; Neuroglia / physiology; Pregnancy; Protein Kinase C / metabolism; Retina / metabolism; Retina / physiopathology; Retina / transplantation; Retinal Bipolar Cells / physiology; Retinal Rod Photoreceptor Cells / physiology; Retinitis Pigmentosa / metabolism; Retinitis Pigmentosa / physiopathology; Retinitis Pigmentosa / surgery; Rhodopsin / genetics; Rhodopsin / metabolism; Swine; Transducin / metabolism; Transplantation, Homologous; Vitrectomy
TL;DR: Fetal full-thickness neuroretina can be transplanted safely to an eye with severe retinal degeneration, and in their major part, the transplants develop a normal laminated morphology and survive for at least 6 months. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Inhibition of bacteriophage replication in Streptococcus thermophilus by subunit poisoning of primase

MICROBIOLOGY-SGM, 153, 3295–3302.

MeSH headings : Amino Acid Sequence; Amino Acid Substitution / genetics; Codon, Nonsense; DNA Primase / antagonists & inhibitors; DNA Primase / genetics; Molecular Sequence Data; Mutagenesis, Site-Directed; Protein Structure, Tertiary; Protein Subunits / genetics; Streptococcus Phages / growth & development; Streptococcus thermophilus / virology; Viral Plaque Assay; Virus Replication / physiology
TL;DR: This study appears to represent the first use of transdominant proteins to inhibit phages that are disruptive to cultures used in industrial fermentations. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Identification of an operon and inducing peptide involved in the production of lactacin B by Lactobacillus acidophilus

JOURNAL OF APPLIED MICROBIOLOGY, 103(5), 1766–1778.

By: A. Dobson n, R. Sanozky-Dawes n & T. Klaenhammer n

author keywords: bacteriocin; class II; inducing peptide; Lactobacillus; two-component regulatory system
MeSH headings : ATP-Binding Cassette Transporters / genetics; Amino Acid Sequence; Bacteriocins / analysis; Bacteriocins / biosynthesis; Bacteriological Techniques; Base Sequence; Cloning, Molecular; Gene Expression Regulation, Bacterial; Intracellular Signaling Peptides and Proteins; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / metabolism; Molecular Sequence Data; Mutagenesis, Insertional; Operon; Peptides / genetics; Sequence Alignment; Sequence Analysis, DNA; Transcription, Genetic
TL;DR: Aim: To determine if a 9·5‐kb region on the Lactobacillus acidophilus NCFM genome, encoded the genetic determinants for regulation and production of lactacin B, a class II bacteriocin. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

High-frequency reversion of geminivirus replication protein mutants during infection

JOURNAL OF VIROLOGY, 81(20), 11005–11015.

By: G. Arguello-Astorga n, J. Ascencio-Ibanez n, M. Dallas n, B. Orozco n & L. Hanley-Bowdoin n

MeSH headings : Arabidopsis / virology; Geminiviridae / genetics; Geminiviridae / physiology; Mosaic Viruses; Mutation, Missense; Plant Diseases / virology; Plant Viruses / genetics; Plant Viruses / physiology; Viral Proteins / genetics; Viral Proteins / metabolism; Viral Proteins / physiology; Virus Replication / genetics
TL;DR: There is strong selection for reversion of the TGMV L148V and CaLCuV L145A mutations but that the nature of the selected revertants is influenced by both the viral background and host components. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Genome-wide patterns of nucleotide polymorphism in domesticated rice

PLOS GENETICS, 3(9), 1745–1756.

By: A. Caicedo n, S. Williamson*, R. Hernandez*, A. Boyko*, A. Fledel-Alon*, T. York*, N. Polato*, K. Olsen n ...

MeSH headings : Alleles; Base Pairing; Base Sequence; Computer Simulation; Crops, Agricultural / genetics; Evolution, Molecular; Founder Effect; Gene Frequency; Genetic Variation; Genetics, Population; Genome, Plant; Likelihood Functions; Models, Genetic; Molecular Sequence Data; Oryza / genetics; Polymerase Chain Reaction; Polymorphism, Single Nucleotide; Recombination, Genetic; Selection, Genetic; Sequence Analysis, DNA
TL;DR: It is found that a simple bottleneck model cannot explain the derived nucleotide polymorphism site frequency spectrum in rice, and a bottleneck model that incorporates selective sweeps, or a more complex demographic model that includes subdivision and gene flow are more plausible explanations for patterns of variation in domesticated rice varieties. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2007 review

Evolution of genes and genomes on the Drosophila phylogeny

[Review of ]. Nature, 450(7167), 203–218.

By: A. Clark, M. Eisen, D. Smith, C. Bergman, B. Oliver, T. Markow, T. Kaufman, M. Kellis ...

Source: NC State University Libraries
Added: August 6, 2018

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