Works Published in 2020

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Displaying works 1 - 20 of 41 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2020 journal article

Developmental Analysis of Mimulus Seed Transcriptomes Reveals Functional Gene Expression Clusters and Four Imprinted, Endosperm-Expressed Genes

Frontiers in Plant Science, 11.

By: M. Flores-Vergara n, E. Oneal*, M. Costa*, G. Villarino*, C. Roberts*, M. Balaguer n, S. Coimbra*, J. Willis*, R. Franks n

co-author countries: Portugal 🇵🇹 United States of America 🇺🇸
author keywords: seed development; ribonucleic acid sequencing; developmental time course analysis; endosperm; genomic imprinting; K-means clustering; MADS-box genes; Mimulus guttatus
Source: ORCID
Added: February 9, 2023

2020 chapter

RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data

In I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums, & A. Zelikovsky (Eds.), Computational Advances in Bio and Medical Sciences (pp. 121–133).

By: P. Perkins n, A. Stepanova n, J. Alonso n & S. Heber n

co-author countries: United States of America 🇺🇸

Ed(s): I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums & A. Zelikovsky

Event: ICCABS 2019

Sources: Crossref, ORCID
Added: October 9, 2021

2020 journal article

Gibberellin-mediated RGA-LIKE1 degradation regulates embryo sac development in Arabidopsis

JOURNAL OF EXPERIMENTAL BOTANY, 71(22), 7059–7072.

By: M. Dolores Gomez*, D. Barro-Trastoy*, C. Fuster-Almunia*, P. Tornero, J. Alonso n & M. Perez-Amador*

co-author countries: Spain 🇪🇸 United States of America 🇺🇸
author keywords: Arabidopsis; DELLA; development; embryo sac; gibberellin; megagametogenesis; ovule; RGL1
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Gibberellins; Ovule / genetics; Ovule / metabolism
Sources: Web Of Science, ORCID
Added: February 15, 2021

2020 article

miRNAs explain the variation in muscle and blood transcriptomes of beef calves born from dams with or without energy restriction during late gestation

Carvalho, E. B., Sanglard, L. P., Nascimento, M., Moriel, P., Sommer, J., Merrill, M., … Serao, N. (2020, November). JOURNAL OF ANIMAL SCIENCE, Vol. 98, pp. 165–165.

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
author keywords: Fetal-programming; maternal nutrition; post-transcriptional regulation
Source: Web Of Science
Added: February 8, 2021

2020 article

Effects of genetic selection for early puberty on the hypothalamic-pituitary-ovarian axis in gilts

Harlow, K. L., Renwick, A., Shuping, S., Sommer, J., Knauer, M., & Nestor, C. (2020, November). JOURNAL OF ANIMAL SCIENCE, Vol. 98, pp. 212–212.

co-author countries: United States of America 🇺🇸
author keywords: puberty; gilt; neuroendocrine
Source: Web Of Science
Added: February 8, 2021

2020 journal article

An early female lethal system of the New World screwworm, Cochliomyia hominivorax, for biotechnology-enhanced SIT

BMC GENETICS, 21.

By: C. Concha*, Y. Yan*, A. Arp*, E. Quilarque, A. Sagel, A. Leon*, W. Owen McMillan*, S. Skoda*, M. Scott n

co-author countries: Germany 🇩🇪 Panama 🇵🇦 United States of America 🇺🇸
author keywords: Transgenic sexing strain; Pest control; Female lethal strain
MeSH headings : Animals; Animals, Genetically Modified; Biotechnology; Diptera / embryology; Diptera / genetics; Embryonic Development; Female; Genes, Lethal; Genetic Fitness; Infertility / genetics; Insect Control; Male; Promoter Regions, Genetic; Tetracycline
Source: Web Of Science
Added: January 19, 2021

2020 journal article

Building a transgenic sexing strain for genetic control of the Australian sheep blow fly Lucilia cuprina using two lethal effectors

BMC GENETICS, 21.

By: Y. Yan n & M. Scott n

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: Sterile insect technique (SIT); Tetracycline transactivator (tTA); Head involution defective (hid); Genetic pest management
MeSH headings : Animals; Animals, Genetically Modified; Calliphoridae / embryology; Calliphoridae / genetics; Embryonic Development; Female; Genes, Lethal; Genetic Fitness; Insect Control; Sheep / parasitology; Tetracycline / pharmacology
Source: Web Of Science
Added: January 19, 2021

2020 journal article

Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(46).

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: January 11, 2021

2020 journal article

Physiological and molecular correlates of the screwworm fly attraction to wound and animal odors

SCIENTIFIC REPORTS, 10(1).

By: P. Hickner*, O. Mittapalli*, A. Subramoniam*, A. Sagel, W. Watson n, M. Scott n, A. Arp*, A. Leon*, Z. Syed*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Behavior, Animal; Diptera / classification; Diptera / drug effects; Diptera / physiology; Female; Gene Expression Regulation; Male; Odorants / analysis; Pheromones / metabolism; Pheromones / pharmacology; RNA-Seq; Wounds and Injuries / metabolism
Source: Web Of Science
Added: January 4, 2021

2020 journal article

Leveraging Multiple Layers of Data To Predict Drosophila Complex Traits

G3-GENES GENOMES GENETICS, 10(12), 4599–4613.

co-author countries: Denmark 🇩🇰 United States of America 🇺🇸
author keywords: Genomic prediction; Transcriptomic prediction; Gene Ontology informed prediction; Drosophila Genetic Reference Panel; GenPred; Shared data resources
MeSH headings : Animals; Drosophila; Drosophila melanogaster / genetics; Female; Genotype; Male; Models, Genetic; Multifactorial Inheritance; Phenotype; Polymorphism, Single Nucleotide
Source: Web Of Science
Added: January 4, 2021

2020 journal article

Using Moderate Transgene Expression to Improve the Genetic Sexing System of the Australian Sheep Blow Fly Lucilia cuprina

INSECTS, 11(11).

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: livestock pest; Lucilia cuprina; genetic control; pro-apoptotic gene; sterile insect technique; genetic sexing; tetracycline-off system; insect transgenesis
Source: Web Of Science
Added: December 21, 2020

2020 journal article

Interactive Effects of Elevated Ozone and Temperature on Growth and Yield of Soybean (Glycine max (L.) Merr.) under Field Conditions

AGRONOMY-BASEL, 10(11).

co-author countries: United States of America 🇺🇸
author keywords: biomass; harvest index; ozone; seed yield; soybean; temperature
Source: Web Of Science
Added: December 14, 2020

2020 journal article

Genotype by environment interaction for gene expression in Drosophila melanogaster

NATURE COMMUNICATIONS, 11(1).

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Drosophila melanogaster / genetics; Female; Gene Expression; Gene Expression Regulation; Gene Regulatory Networks; Gene-Environment Interaction; Genes, Insect; Genetic Variation; Genotype; Male; Quantitative Trait Loci; RNA-Seq; Temperature; Transcriptome
Source: Web Of Science
Added: November 30, 2020

2020 journal article

Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations

NATURE GENETICS, 52(11), 1256-+.

co-author countries: Australia 🇦🇺 Kenya 🇰🇪 Peru 🇵🇪 United States of America 🇺🇸
MeSH headings : Algorithms; Chromosomes, Plant; Computer Simulation; Genetic Linkage; Genome, Plant; Genotype; Ipomoea / genetics; Plant Breeding; Poaceae / genetics; Polyploidy; Protein Array Analysis; Solanum tuberosum / genetics
Source: Web Of Science
Added: November 24, 2020

2020 article

Cyst nematode bio-communication with plants: implications for novel management approaches

PEST MANAGEMENT SCIENCE.

By: J. Ochola*, D. Coyne*, L. Cortada*, S. Haukeland*, M. Ng'ang'a*, A. Hassanali*, C. Opperman n, B. Torto*

co-author countries: Belgium 🇧🇪 Kenya 🇰🇪 Norway 🇳🇴 United States of America 🇺🇸
MeSH headings : Animals; Communication; Cysts; Nematoda; Pest Control; Plants
Source: Web Of Science
Added: November 24, 2020

2020 journal article

Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots

PLOS GENETICS, 16(10).

By: E. Wear n, J. Song, G. Zynda, L. Mickelson-Young n, C. LeBlanc*, T. Lee n, D. Deppong n, G. Allen n ...

co-author countries: United States of America 🇺🇸
MeSH headings : Cell Nucleus / drug effects; Cell Nucleus / genetics; Centromere / drug effects; Centromere / genetics; DNA Replication / drug effects; DNA Replication / genetics; DNA Replication Timing / drug effects; DNA Replication Timing / genetics; DNA, Plant / drug effects; DNA, Plant / genetics; Deoxyuridine / analogs & derivatives; Deoxyuridine / pharmacology; Endocytosis / drug effects; Meristem / drug effects; Meristem / genetics; Mitosis / drug effects; Mitosis / genetics; Nucleosomes / drug effects; Plant Roots / drug effects; Plant Roots / genetics; Plant Roots / growth & development; S Phase / genetics; Zea mays / genetics; Zea mays / growth & development
Sources: Web Of Science, ORCID
Added: November 9, 2020

2020 journal article

Derivation of stable embryonic stem cell-like, but transcriptionally heterogenous, induced pluripotent stem cells from non-permissive mouse strains

MAMMALIAN GENOME, 31(9-12), 263–286.

By: T. Garbutt n, K. Konganti*, T. Konneker n, A. Hillhouse*, D. Phelps n, A. Jones n, D. Aylor n, D. Threadgill*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Biomarkers; Cell Differentiation; Cells, Cultured; Cellular Reprogramming / genetics; Embryonic Stem Cells / cytology; Embryonic Stem Cells / metabolism; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genetic Heterogeneity; Immunophenotyping; Induced Pluripotent Stem Cells / cytology; Induced Pluripotent Stem Cells / metabolism; Mice; Platelet Endothelial Cell Adhesion Molecule-1; Species Specificity; Transcriptome
Source: Web Of Science
Added: October 19, 2020

2020 journal article

Genetic Basis of Natural Variation in Spontaneous Grooming in Drosophila melanogaster

G3-GENES GENOMES GENETICS, 10(9), 3453–3460.

co-author countries: Japan 🇯🇵 United States of America 🇺🇸
author keywords: Drosophila Genetic Reference Panel; genome wide association analysis; RNA interference; behavioral genetics
MeSH headings : Animals; Drosophila melanogaster / genetics; Epistasis, Genetic; Female; Genetic Variation; Genome-Wide Association Study; Grooming
Source: Web Of Science
Added: October 5, 2020

2020 journal article

Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops

THEORETICAL AND APPLIED GENETICS, 133(12), 3345–3363.

co-author countries: Kenya 🇰🇪 Peru 🇵🇪 United States of America 🇺🇸
MeSH headings : Crops, Agricultural / genetics; Crops, Agricultural / growth & development; Genotype; Ipomoea batatas / genetics; Ipomoea batatas / growth & development; Phenotype; Plant Breeding; Polymorphism, Single Nucleotide; Polyploidy; Quantitative Trait Loci; Selection, Genetic; Sequence Analysis, DNA
Source: Web Of Science
Added: September 21, 2020

2020 journal article

Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs

COMMUNICATIONS BIOLOGY, 3(1).

By: M. Scott n, J. Benoit*, R. Davis n, S. Bailey*, V. Varga*, E. Martinson*, P. Hickner*, Z. Syed* ...

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
MeSH headings : Animals; Calliphoridae / genetics; Calliphoridae / pathogenicity; Evolution, Molecular; Gene Expression Regulation / genetics; Genomics / methods; Host-Parasite Interactions / genetics; Larva / genetics; Larva / growth & development; Livestock / genetics; Livestock / parasitology; Pest Control, Biological; RNA-Seq; Screw Worm Infection / genetics; Screw Worm Infection / parasitology; South America
Source: Web Of Science
Added: September 7, 2020