Works Published in 2015
Displaying works 21 - 40 of 86 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2015 journal article
Microbial-mediated redistribution of ecosystem nitrogen cycling can delay progressive nitrogen limitation
Biogeochemistry.
author keywords: Nitrogen; Microbes; Mycorrhizal fungi; Progressive nitrogen limitation; Ecosystems
TL;DR:
It is suggested that microbe-mediated changes in N partitioning can delay PNL and may thereby act as a mechanism to extend the duration of the land carbon sink in response to rising atmospheric CO2.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2015 book
Guide to the vascular flora of Howell Woods (Johnston County, North Carolina, U.S.A.)
Ft. Worth, Texas: Botanical Research Institute of Texas Press.
Source: NC State University Libraries
Added: July 28, 2019
2015 journal article
Comparative Proteomic Analysis of Developing Rhizomes of the Ancient Vascular PlantEquisetum hyemaleand Different Monocot Species
Journal of Proteome Research, 14(4), 1779–1791.
author keywords: rhizome development; proteomics; label free quantification
MeSH headings : Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Equisetum / genetics; Equisetum / metabolism; Plant Proteins / analysis; Plant Proteins / classification; Plant Proteins / metabolism; Poaceae / genetics; Poaceae / metabolism; Proteome / genetics; Proteome / metabolism; Proteomics / methods; Rhizome / genetics; Rhizome / metabolism; Species Specificity; Tandem Mass Spectrometry
TL;DR:
This work characterized the proteome of rhizome apical tips and elongation zones from different species using a GeLC-MS/MS (one-dimensional electrophoresis in combination with liquid chromatography coupled online with tandem mass spectrometry) spectral-counting proteomics strategy.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: June 21, 2019
2015 journal article
Genetic structure and post-glacial expansion ofCornus floridaL. (Cornaceae): integrative evidence from phylogeography, population demographic history, and species distribution modeling
Journal of Systematics and Evolution, 54(2), 136–151.
author keywords: Bayesian skyride plot; Cornus florida; LGM; phylogeography; plastid DNA; post-glacial range expansion; species distribution modeling
TL;DR:
This study demonstrates the benefit of integrating genetic data and species distribution modeling to obtain corroborative evidence in elucidating recent biogeographic history and understanding of genetic patterns and species evolution.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Crossref
Added: June 8, 2019
2015 journal article
Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies
Scientific Data, 2(1).
Contributors: S. Utturkar *, D. Klingeman *, J. Bruno-Barcena n , M. Chinn n , A. Grunden n , M. Köpke *, S. Brown *
MeSH headings : Algorithms; Clostridium / genetics; Genome, Bacterial; Genomics; Sequence Analysis, DNA / methods
TL;DR:
High quality sequence datasets which span three generations of sequencing technologies, containing six types of data from four NGS platforms and originating from a single microorganism, Clostridium autoethanogenum are described.
(via Semantic Scholar)
www.nature.com (publisher PDF)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Crossref, NC State University Libraries, ORCID
Added: March 4, 2019
2015 journal article
Isolation and characterization of a 2-methylpropene (isobutylene)-metabolizing bacterium, Mycobacterium sp. ELW1
Applied and Environmental Microbiology, 81, 1966–1976.
Source: NC State University Libraries
Added: February 5, 2019
2015 journal article
Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
BMC Genomics, 16(7), 7.
author keywords: Virus metagenomics; Viral metagenomes; Virus-like particles; Microbiome; Bacteriophage; CsCl density gradient
MeSH headings : Animals; Bacteriophages / genetics; Bacteriophages / isolation & purification; Contig Mapping; DNA, Viral / analysis; DNA, Viral / isolation & purification; Feces / virology; Genetic Techniques / standards; Intestines / virology; Metagenome; Metagenomics / methods; Mice; Mice, Inbred C57BL; Reproducibility of Results; Sequence Analysis, DNA
TL;DR:
The CsCl density gradient centrifugation method, which is frequently used for VLP purification, was most efficient in removing host derived DNA, but also showed strong discrimination against specific phages and showed a lower reproducibility of quantitative results.
(via Semantic Scholar)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: February 3, 2019
2015 journal article
Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments
Environmental Microbiology, 17(12), 5023–5035.
MeSH headings : Animals; Bacteria / metabolism; Carbon Dioxide / metabolism; Carbon Monoxide / metabolism; Energy Metabolism; Geologic Sediments / microbiology; Hydrogen / metabolism; Mediterranean Region; Oligochaeta / microbiology; Oxidation-Reduction; Seawater / microbiology; Spectrometry, Mass, Secondary Ion; Sulfur Compounds / metabolism; Symbiosis
TL;DR:
Direct evidence is provided that the O .
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: February 3, 2019
2015 journal article
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels
ELife, 4, e07966.
MeSH headings : Animals; Aquatic Organisms / microbiology; Bacteria / genetics; Bacteria / growth & development; Bacterial Toxins / biosynthesis; Bacterial Toxins / genetics; Bivalvia / microbiology; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Gene Expression Profiling; Genome, Bacterial; Hydrothermal Vents; Molecular Sequence Data; Proteome / analysis; Seawater; Sequence Analysis, DNA; Symbiosis
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: February 3, 2019
2015 book
High-throughput and high-content screening using peptides
In Phage Display in Biotechnology and Drug Discovery, Second Edition (pp. 249–274).
Contributors: R. Carlson, R. Hyde-DeRuyscher & P. Hamilton
Source: ORCID
Added: February 1, 2019
2015 article
High-Throughput and High-Content Screening Using Peptides
Carlson, R., Hyde-DeRuyscher, R., & Hamilton, P. (2015, February). Phage Display In Biotechnology and Drug Discovery, Second Edition, pp. 249–274.
Source: ORCID
Added: January 31, 2019
2015 book
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: January 22, 2019
2015 conference paper
Teaching to foster critical and creativing TH!NKing at North Carolina State University
Proceedings of 2015 International Conference on Interactive Collaborative Learning (ICL), 1117–1119.
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2015 journal article
Biology of reactive oxygen species, oxidative stress, and antioxidants in lactic acid bacteria
Probiotics and Prebiotics: Current Research and Future Trends, 205–218.
Contributors: M. Leite, B. Troxell, J. Bruno-Barcena* & H. Hassan*
Sources: NC State University Libraries, NC State University Libraries, ORCID
Added: August 6, 2018
2015 conference paper
Mining transcript features related to translation in Arabidopsis using LASSO and random forest
2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015.
Contributors: Q. Hu n, C. Merchante n, A. Stepanova n , J. Alonso n & S. Heber n
TL;DR:
It is found that the contribution of features may be different for transcripts belonging to different functional groups, suggesting that transcripts might employ different mechanisms for the regulation of translation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: NC State University Libraries, ORCID, NC State University Libraries
Added: August 6, 2018
2015 chapter
Methods for RNA Profiling of Gravi-Responding Plant Tissues
In Methods in Molecular Biology (Vol. 1309, pp. 91–117).
Contributors: J. Dalal n, E. Land n , N. Vasani n, L. He n, C. Smith n, M. Rodriguez-Welsh n, I. Perera n , H. Sederoff n
author keywords: RNA; Transcript; Transcriptome; Sequencing; PCR; RNAseq; sRNA; miRNA
MeSH headings : Gene Expression Profiling / methods; Gene Expression Regulation, Plant; Gravity Sensing / genetics; Oligonucleotide Array Sequence Analysis / methods; RNA / genetics; RNA, Messenger / biosynthesis; RNA, Messenger / genetics; Seeds / genetics; Seeds / growth & development; Transcriptome / genetics
TL;DR:
The current and most widely used methods to profile the changes in an entire transcriptome by high-throughput sequencing of RNA fractions (RNAseq) and single gene transcript analysis using real-time quantitative reverse-transcriptase polymerase chain reaction (qRT-PCR) are described.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref, ORCID
Added: August 6, 2018
2015 journal article
Inoculum optimization of Clostridium beijerinckii for reproducible growth
FEMS Microbiology Letters, 362(19), fnv164.
Contributors: W. Sandoval-Espinola n, M. Chinn n & J. Bruno-Barcena n
Ed(s): M. Sauer
author keywords: Clostridium; inoculum; specific growth rate; quality curve; Clostridium beijerinckii; adaptation
MeSH headings : Butanols; Clostridium beijerinckii / growth & development; Culture Media; Ethanol; Fermentation; Industrial Microbiology / methods; Kinetics; Reproducibility of Results
TL;DR:
Evaluating the influence of inoculum age (harvest time) on the subsequent population's maximum specific growth rate, as a signal of population homogeneity, allowed us to understand the transient nature of seed cultures of C. beijerinckii NCIMB 8052 and SA-1, while enabling reproducibility and consistent culture performance.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2015 chapter
Whole-Genome DNA Methylation Profiling with Nucleotide Resolution
In Methods in Molecular Biology (Vol. 1284, pp. 27–40).
author keywords: 5-Methylcytosine; Epigenetics; SPRI; DNA methylome; Bisulfite conversion; Next-gen sequencing
MeSH headings : DNA Methylation; Epigenesis, Genetic; Epigenomics / methods; Gene Expression Profiling / methods; Genome; Genomic Library; High-Throughput Nucleotide Sequencing / methods
TL;DR:
Gene-specific methylation analysis by sequencing of bisulfite-treated genomic DNA has been instrumental in understanding how DNA methylation affects gene transcription, and techniques have been developed for genome-wide 5mC detection, and complete methylome at single base resolution has been reported for several organisms, providing unprecedented details on the dynamic nature ofDNA methylation during development.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
2015 book
Plant functional genomics: Methods and protocols
In J. M. Alonso & A. N. Stepanova (Eds.), Plant Functional Genomics: Methods and Protocols: Second Edition (2nd ed., pp. 1–526).
Contributors: J. Alonso & A. Stepanova*
Ed(s): J. Alonso & A. Stepanova*
TL;DR:
This chapter describes an approach to map chromatin features in specifi c cell types of Arabidopsis thaliana using nuclei purifi cation from individual cell types with the INTACT method followed by chromatin immunoprecipitation and high-throughput sequencing (ChIP-seq).
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2015 journal article
Plant functional genomics methods and protocols second edition preface
Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.
Source: NC State University Libraries
Added: August 6, 2018
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