Works Published in 2023
Displaying works 41 - 60 of 89 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2023 journal article
Molecular understanding of anthocyanin biosynthesis activated by PAP1 and regulated by 2, 4-dichlorophenoxyacetic acid in engineered red <i>Artemisia annua</i> cells
PLANTA, 258(4).
author keywords: Anthocyanin biosynthesis; Auxins; MBW complex; Metabolic engineering; pap1-D; PAP1; 2,4-D
TL;DR:
To understand how 2,4-dichlorophenoxyacetic acid, an auxin, regulates the PAP1-activated anthocyanin biosynthesis, five different concentrations were tested and showed that the five concentrations reduced the expression levels of the constitutive P AP1 transgene and three pathway genes significantly and eliminated the expression of the chalcone synthase gene either significantly or slightly.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: September 6, 2023
2023 journal article
Functional annotation of proteins for signaling network inference in non-model species
NATURE COMMUNICATIONS, 14(1).
TL;DR:
A multi-layer neural network that determines protein functionality directly from the protein sequence is developed that shows generalization and scalability and extends to Oryza sativa, Zea mays, Sorghum bicolor, and Triticum aestivum.
(via Semantic Scholar)
www.nature.com (publisher PDF)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: September 5, 2023
2023 journal article
Metabolic handoffs between multiple symbionts may benefit the deep-sea bathymodioline mussels
ISME COMMUNICATIONS, 3(1).
UN Sustainable Development Goal Categories
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: September 5, 2023
2023 journal article
Bridging the gap: parallel profiling of ribosome associated and total RNA species can identify transcriptional regulatory mechanisms of plants in spaceflight
JOURNAL OF PLANT INTERACTIONS, 18(1).
author keywords: Spaceflight; transcriptomics; translatomics; TRAP; Arabidopsis thaliana
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 29, 2023
2023 journal article
Trimming and Decontamination of Metagenomic Data can Significantly Impact Assembly and Binning Metrics, Phylogenomic and Functional Analysis
CURRENT BIOINFORMATICS, 18(5), 428–439.
author keywords: Trimming; decontamination; binning; assembly; metagenomics; MAG; QC; accessibility
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 28, 2023
2023 article
Fungal Symbionts Generate Water-Saver and Water-Spender Plant Drought Strategies via Diverse Effects on Host Gene Expression
Aimone, C. D., Giauque, H., & Hawkes, C. V. (2023, March 21). PHYTOBIOMES JOURNAL.
author keywords: Ascomycota; microbiome; Panicum hallii; RNA-seq; stress tolerance
TL;DR:
The results suggest that fungal effects on plant transcription may identify how they extend the plant phenotype, and the comparison across multiple fungi allows us to differentiate broadly fungal-responsive plant genes vs. those plant genes that respond only to single fungal taxa.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
Source: Web Of Science
Added: August 28, 2023
2023 article
Alcohol-Dependent Cometabolic Degradation of Chlorinated Aliphatic Hydrocarbons and 1,4-Dioxane by Rhodococcus rhodochrous strain ATCC 21198
Bealessio, A. D. D., Chen, W., Krippaehne, K. J. J., Murnane, R. A. A., Hyman, M. R. R., & Semprini, L. (2023, August 2). ENVIRONMENTAL ENGINEERING SCIENCE, Vol. 8.
author keywords: 1; 4-dioxane; activity-based labeling; alcohols; alkanes; chlorinated aliphatic hydrocarbons; cometabolism; esters; short-chain alkane monooxygenase
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 21, 2023
2023 journal article
Identification of bromelain subfamily proteases encoded in the pineapple genome
SCIENTIFIC REPORTS, 13(1).
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 21, 2023
2023 article
Abscisic acid acts essentially on stomata, not on the xylem, to improve drought resistance in tomato
Haverroth, E. J., Oliveira, L. A., Andrade, M. T., Taggart, M., McAdam, S. A. M., Zsogon, A., … Cardoso, A. A. (2023, August 1). PLANT CELL AND ENVIRONMENT.
author keywords: embolism resistance; hydraulic vulnerability; minimum leaf conductance; Solanum lycopersicum; water deficit; water loss
TL;DR:
Lower water loss in plants with higher ABA meant that lethal water potentials associated with embolism occurred later during drought in sp12 plants, followed by WT, and then by the ABA-deficient mutants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 14, 2023
2023 journal article
Genome segment ratios change during whitefly transmission of two bipartite cassava mosaic begomoviruses
SCIENTIFIC REPORTS, 13(1).
MeSH headings : Animals; Begomovirus / genetics; Manihot; Hemiptera; Plants; Vegetables; Plant Diseases
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 7, 2023
2023 article
Seed endophytic bacterium Bacillus velezensis and its lipopeptides acts as elicitors of defense responses against Fusarium verticillioides in maize seedlings
Pal, G., Saxena, S., Kumar, K., Verma, A., Kumar, D., Shukla, P., … Verma, S. K. (2023, July 19). PLANT AND SOIL.
author keywords: Lipopeptides; Fusarium; Bacillus velezensis; Biocontrol; Defense genes
TL;DR:
The study highlights the potential of bacterial lipopeptides as elicitors of defense responses in maize seedlings against Fusarium infection.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
Source: Web Of Science
Added: August 7, 2023
2023 journal article
Biochemical characterization of a psychrophilic and halotolerant a-carbonic anhydrase from a deep-sea bacterium, Photobacterium profundum
AIMS MICROBIOLOGY, 9(3), 540–553.
author keywords: Photobacterium profundum; a-carbonic anhydrase; halotolerance; biomineralization; carbon capture
TL;DR:
The first biochemical characterization of P. profundum α–CA (PprCA) is reported which revealed several catalytic properties that are atypical for this class of CA's and it is demonstrated that PprCA accelerates CO2 biomineralization to calcium carbonate under alkaline conditions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: July 19, 2023
2023 journal article
Distinct regulatory pathways contribute to dynamic CHH methylation patterns in transposable elements throughout Arabidopsis embryogenesis
FRONTIERS IN PLANT SCIENCE, 14.
author keywords: DNA methylation; CHH methylation; transposable elements; CMT2; RdDM; embryogenesis
TL;DR:
DNA methylome profiling at five stages of Arabidopsis embryogenesis revealed that the gradual increase in mCHH in embryos coincided with the expansion of small RNA expression and regional m CHH spreading to nearby sites at numerous loci, and highlighted the interplay between the length, location, and cytosine frequency of transposons and themCHH machinery in modulating mCHh dynamics during embryogenesis.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: July 3, 2023
2023 journal article
Cassava begomovirus species diversity changes during plant vegetative cycles
FRONTIERS IN MICROBIOLOGY, 14.
author keywords: plant virus; Cassava (Manihot esculenta); vegetative (asexual) propagation; vector transmission; whitefly (Bemisia tabaci)
TL;DR:
The results suggest that whitefly transmission and vegetative transmission lead to different outcomes for ACMV and EACMV-like viruses.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: July 3, 2023
2023 article
Herbaceous vegetation responses to experimental fire in savannas and forests depend on biome and climate
Gold, Z. J., Pellegrini, A. F. A., Refsland, T. K., Andrioli, R. J., Bowles, M. L., Brockway, D. G., … Staver, A. C. (2023, May 10). ECOLOGY LETTERS.
author keywords: fire; herbaceous vegetation; C-3 and C-4 grasses; fire-vegetation feedbacks; prescribed burns; experimental fire; fire frequency; alternative stable states; savanna-forest bistability; biome distributions
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: June 12, 2023
2023 article
An intranuclear bacterial parasite of deep-sea mussels expresses apoptosis inhibitors acquired from its host
Porras, M. Á. G., Assié, A., Tietjen, M., Violette, M., Kleiner, M., Gruber-Vodicka, H., … Leisch, N. (2023, June 11).
TL;DR:
Comparative phylogenetic analyses revealed that Ca.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Source: ORCID
Added: June 12, 2023
2023 article
Mineral-Bound Trace Metals as Cofactors for Anaerobic Biological Nitrogen Fixation
Sheng, Y., Baars, O., Guo, D., Whitham, J., Srivastava, S., & Dong, H. (2023, April 28). ENVIRONMENTAL SCIENCE & TECHNOLOGY.
author keywords: KEYWORDS; Archean ocean; Clostridium kluyveri; metal bioavailability; molybdenite; nitrogen fixation
MeSH headings : Nitrogen Fixation; Molybdenum; Anaerobiosis; Trace Elements; Nitrogenase / metabolism; Metals; Minerals; Nitrogen
TL;DR:
The results show that C. kluyveri utilized mineral-associated metals to express nitrogenase genes and fix nitrogen, with profound implications for coevolution of the biosphere and geosphere.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science; OpenAlex)
Source: Web Of Science
Added: June 5, 2023
2023 journal article
Scalable, Flexible, and Cost-Effective Seedling Grafting
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 1(191).
MeSH headings : Seedlings; Cost-Benefit Analysis; Arabidopsis / genetics; Plants; Solanum lycopersicum; Plant Roots
TL;DR:
A simple procedure to make an in-house reusable grafting device using silicone elastomer mix, and how to use this device for seedling grafting is described, and beginners can have their first successfully grafted seedlings in less than 3 weeks from start to finish.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: May 30, 2023
2023 article
Exceptionally high genetic variance of the doubled haploid (DH) population of poplar
Liu, C., Wang, S., Liu, Y., Wang, M., Fan, E., Liu, C., … Qu, G. (2023, May 4). JOURNAL OF FORESTRY RESEARCH, Vol. 5.
author keywords: Populus; Anther culture; Doubled haploid; Genetic variance; Flow cytometry
TL;DR:
This study provides an effective protocol for poplar haploid induction based on an anther culture method and shows that some excellent homozygous lines have the potential to be model plants in genetic and breeding studies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: May 30, 2023
2023 article
Assessing the role of REM13, REM34 and REM46 during the transition to the reproductive phase in Arabidopsis thaliana
Manrique, S., Caselli, F., Matias-Hernandez, L., Franks, R. G., Colombo, L., & Gregis, V. (2023, May 12). PLANT MOLECULAR BIOLOGY, Vol. 5.
author keywords: REM transcription factor; Flowering time; Cell division; Co-expression analysis; Protein interaction; Arabidopsis thaliana
TL;DR:
It is suggested that three REM genes have a role in flowering time regulation and may modulate cell cycle progression and protein interaction experiments revealed that REM34 and REM46 interact with each other, suggesting that they might work cooperatively to regulate cell division during inflorescence meristem commitment.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: May 30, 2023
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