Works Published in 1999

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Displaying works 1 - 20 of 43 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

1999 chapter

Tree genomes: What will we understand about them by the year 2020 and how might we use that knowledge?

In Forest genetics and sustainability (Forestry sciences; vol. 63) (pp. 23–30).

TL;DR: The purpose of this paper is to speculate about the future applications of molecular genetics to the understanding and utilization of tree genomes and to provide an overview of ideas related to application to forest trees of existing technology in the relatively near future. (via Semantic Scholar)
Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

Surfing on AG Biotech into genomics

Molecular Breeding, 5(1999), 485–491.

Source: NC State University Libraries
Added: August 6, 2018

1999 article

Iron regulatory element and internal loop/bulge structure for ferritin mRNA studied by cobalt(III) hexammine binding, molecular modeling, and NMR spectroscopy (vol 37, pg 1505, 1998)

Gdaniec, Z., Sierzputowska-Gracz, H., & Theil, E. C. (1999, April 27). BIOCHEMISTRY, Vol. 38, pp. 5676–5676.

By: Z. Gdaniec, H. Sierzputowska-Gracz* & E. Theil*

TL;DR: The ferritin IRE, a highly conserved mRNA translation regulatory element in animal mRNA, was studied by molecular modeling (using MC-SYM and DOCKING) and by NMR spectroscopy and is the best characterized IRE in terms of structure and function. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

1999 patent

Antibodies that selectively bind quadruplex nucleic acids

Washington, DC: U.S. Patent and Trademark Office.

By: C. Hardin, B. Brown, J. Roberts & S. Pelsue

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

A distinctive RNA fold: The solution structure of an analogue of the yeast tRNA(Phe) T psi C domain

BIOCHEMISTRY, 38(27), 8647–8656.

By: K. Koshlap n, R. Guenther n, E. Sochacka n, A. Malkiewicz n & P. Agris n

MeSH headings : Anticodon / chemistry; Base Sequence; Crystallography, X-Ray; Models, Molecular; Molecular Sequence Data; Nuclear Magnetic Resonance, Biomolecular / methods; Nucleic Acid Conformation; Pseudouridine / chemistry; RNA, Fungal / chemistry; RNA, Transfer, Phe / chemistry; Saccharomyces cerevisiae / chemistry; Solutions; Uridine / analogs & derivatives; Uridine / chemistry
TL;DR: It is believed that the structure determined may represent an intermediate in the folding pathway during the maturation of tRNA, which has a considerable resemblance to the analogous domain in the crystal structure of the full-length yeast tRNAPhe. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Orientation of the tRNA anticodon in the ribosomal P-site: Quantitative footprinting with U-33-modified, anticodon stem and loop domains

RNA, 5(9), 1191–1199.

By: S. Ashraf n, R. Guenther n & P. Agris n

author keywords: anticodon stem/loops; modified nucleosides; quantitative footprinting; ribosome
MeSH headings : Aldehydes / pharmacology; Anticodon / genetics; Antiviral Agents / pharmacology; Base Sequence; Butanones; Dose-Response Relationship, Drug; Genetic Techniques; Kinetics; Molecular Sequence Data; Mutagens / pharmacology; RNA, Fungal / genetics; RNA, Fungal / metabolism; RNA, Ribosomal, 16S / metabolism; RNA, Transfer / genetics; RNA, Transfer / metabolism; RNA, Transfer, Phe / metabolism; Ribosomes / genetics; Ribosomes / metabolism; Sulfuric Acid Esters / pharmacology; Temperature
TL;DR: Two residues, G926 and G1338, were afforded significantly greater protection by both yeast tRNA(Phe) and the ASL-U33 than other residues, such as A532, A794, C795, and A1339, which are important to efficient P-site binding of tRNA. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Crystal structure of bullfrog M ferritin at 2.8 angstrom resolution: analysis of subunit interactions and the binuclear metal center

JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 4(3), 243–256.

By: Y. Ha*, D. Shi*, G. Small n, E. Theil n & N. Allewell*

author keywords: crystallography; iron oxidation; iron storage; multisubunit proteins
MeSH headings : Amino Acid Sequence; Animals; Aspartic Acid; Binding Sites; Conserved Sequence; Crystallography, X-Ray; Ferritins / chemistry; Ferritins / metabolism; Magnesium / metabolism; Models, Molecular; Molecular Sequence Data; Protein Conformation; Rana catesbeiana; Sequence Homology, Amino Acid; Tyrosine / analysis; Tyrosine / metabolism
TL;DR: The crystal structure of the homopolymer of recombinant frog M ferritin is determined and it is suggested that Gln137 and Asp140 are a vestige of the second GluxxHis site, resulting from single nucleotide mutations of Glu and His codons and giving rise to Ala140 or Ser140 present in other eukaryotic H-type ferritins, by additional singleucleotide mutations. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Association of the A-204C polymorphism in the cholesterol 7 alpha-hydroxylase gene with variations in plasma low density lipoprotein cholesterol levels in the Framingham Offspring Study

Journal of Lipid Research, 40(10), 1883–1889.

By: P. Couture, J. Otvos, L. Cupples, P. Wilson, E. Schaefer & J. Ordovas

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

Structural and functional roles of the N1-and N3-protons of Psi at tRNA's position 39

NUCLEIC ACIDS RESEARCH, 27(17), 3543–3549.

By: C. Yarian n, M. Basti*, R. Cain n, G. Ansari n, R. Guenther n, E. Sochacka*, G. Czerwinska*, A. Malkiewicz*, P. Agris*

MeSH headings : Anticodon / chemistry; Genes, Fungal / genetics; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; Protons; Pseudouridine / chemistry; RNA, Ribosomal, 16S / chemistry; RNA, Transfer, Phe / chemistry; Ribosomes / chemistry; Structure-Activity Relationship; Temperature; Thermodynamics; Uridine / chemistry; Yeasts / genetics
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Molecular structure-property relationships for electron-transfer rate attenuation in redox-active core dendrimers

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 121(43), 9958–9966.

UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling

RNA, 5(11), 1430–1439.

author keywords: 16S rRNA; base triple; comparative sequence analysis; molecular modeling
MeSH headings : Base Pairing; Base Sequence; Escherichia coli / genetics; Hydrogen Bonding; Models, Molecular; Nucleic Acid Conformation; RNA, Bacterial / chemistry; RNA, Ribosomal, 16S / chemistry; Ribosomes / genetics; Sequence Homology, Nucleic Acid
TL;DR: Molecular modeling shows that U121 interacts with C124 in the U121 (C124:G237) base triple, which maintains isomorphic structures for the three most frequent sequence motifs, is consistent with chemical reactivity of U121 in E. coli ribosomes, and is geometrically favorable. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

1999 journal article

High-efficiency Agrobacterium-mediated transformation of Norway spruce (Picea abies) and loblolly pine (Pinus taeda)

Plant Molecular Biology, 39(3), 407–416.

By: A. Wenck n, M. Quinn n, R. Whetten n, G. Pullman & R. Sederoff n

MeSH headings : Acetophenones / pharmacology; Agrobacterium tumefaciens / genetics; Agrobacterium tumefaciens / growth & development; Agrobacterium tumefaciens / pathogenicity; Base Sequence; Culture Techniques; DNA, Bacterial / analysis; DNA, Bacterial / genetics; Dose-Response Relationship, Drug; Molecular Sequence Data; Pinus taeda; Transformation, Genetic / drug effects; Virulence / genetics
TL;DR: Agrobacterium-mediated gene transfer is a useful technique for large-scale generation of transgenic Norway spruce and may prove useful for other conifer species. (via Semantic Scholar)
Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

Germanium segregation in the Co/SiGe/Si(001) thin film system

JOURNAL OF MATERIALS RESEARCH, 14(11), 4372–4384.

By: P. Goeller n, B. Boyanov n, D. Sayers n, R. Nemanich n, A. Myers* & E. Steel*

Source: Web Of Science
Added: August 6, 2018

1999 review

Unexpected variation in lignin

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 2(2), 145–152.

By: R. Sederoff n, J. MacKay*, J. Ralph* & R. Hatfield*

MeSH headings : Alcohol Oxidoreductases / genetics; Alcohol Oxidoreductases / metabolism; Lignin / biosynthesis; Lignin / chemistry; Mutation; Phenols / metabolism; Plants, Genetically Modified; Trees / genetics; Trees / metabolism
TL;DR: The results argue in favor of an increased potential for genetic modification of lignin and indicate that the knowledge of the biosynthesis of lIGNin is far from complete. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Thermodynamic contribution of nucleoside modifications to yeast tRNA(Phe) anticodon stem loop analogs

Acta Biochimica Polonica, 46(1), 163–172.

By: P. Agris, R. Guenther, E. Sochacka, W. Newman, G. Czerwinska, G. Liu, W. Ye, A. Malkiewicz

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

The uridine in "U-turn": Contributions to tRNA-ribosomal binding

RNA, 5(4), 503–511.

By: S. Ashraf n, G. Ansari n, R. Guenther n, E. Sochacka*, A. Malkiewicz* & P. Agris n

author keywords: anticodon conformation; anticodon stem loop analogs; ASL; nucleoside modifications; ribosome; translation; tRNA(Phe) U-turn
MeSH headings : Anticodon / chemistry; Anticodon / genetics; Humans; Models, Molecular; Molecular Structure; Nucleic Acid Conformation; Nucleic Acid Denaturation; RNA, Fungal / chemistry; RNA, Fungal / genetics; RNA, Transfer, Phe / chemistry; RNA, Transfer, Phe / metabolism; Ribosomes / genetics; Ribosomes / metabolism; Temperature; Uridine / chemistry; Uridine / genetics
TL;DR: The results demonstrate that proton donations by the N3-H and 2'OH groups of U33 are not absolutely required for ribosomal binding, and suggest that the overall uridine conformation, including a dynamic (C3'-endo > C2'-endo) sugar pucker, anti-conformation, and ability of uracil to stack between C32 and A35-phosphate, are the contributing factors to a functional U-turn. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Long-distance RNA-RNA interactions and conserved sequence elements affect potato virus X plus-strand RNA accumulation

RNA, 5(5), 636–645.

By: K. Kim n & C. Hemenway n

author keywords: cis-acting regulatory elements; plant RNA virus; RNA replication; subgenomic RNA synthesis
MeSH headings : 5' Untranslated Regions / genetics; Macromolecular Substances; Mutagenesis, Site-Directed; Plants, Toxic; Potexvirus / genetics; Potexvirus / physiology; Protoplasts / virology; RNA, Viral / chemistry; RNA, Viral / metabolism; Regulatory Sequences, Nucleic Acid; Templates, Genetic; Tobacco / cytology; Tobacco / virology; Transcription, Genetic; Virulence / genetics; Virus Replication
TL;DR: It is indicated that long distance RNA-RNA interactions and the sequences of the interacting elements are required for PVX plus-strand RNA accumulation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Hepatic lipase activity influences high density lipoprotein subclass distribution in normotriglyceridemic men: genetic and pharmacological evidence

Journal of Lipid Research, 40(2), 229–234.

By: S. Grundy, G. Vega, J. Otvos, D. Rainwater & J. Cohen

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

Single atom modification (O -> S) of tRNA confers ribosome binding

RNA, 5(2), 188–194.

By: S. Ashraf n, E. Sochacka*, R. Cain n, R. Guenther n, A. Malkiewicz* & P. Agris n

author keywords: 2-thiouridine; anticodon conformation; anticodon stem loop analogs; nucleoside modifications; ribosome; translation; tRNA(LyS)
MeSH headings : Aldehydes / metabolism; Anticodon / genetics; Butanones; Escherichia coli / metabolism; Humans; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; Nucleic Acid Denaturation / genetics; Nucleic Acid Hybridization / genetics; RNA, Fungal / genetics; RNA, Transfer, Lys / chemistry; RNA, Transfer, Lys / genetics; Ribosomes / metabolism; Spectrum Analysis; Temperature; Thiouridine / analogs & derivatives; Thiouridine / metabolism
TL;DR: It is concluded that s2U34 in tRNALysSUU and in other s2 U34-containing tRNAs is critical for generating an anticodon conformation that leads to effective codon interaction in all organisms. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Growth of epitaxial CoSi2 on SiGe(001)

JOURNAL OF APPLIED PHYSICS, 86(3), 1355–1362.

UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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