Works Published in 2019
Displaying works 1 - 20 of 33 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2019 journal article
Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future
PLANT DIRECT, 3(1).
author keywords: Arabidopsis; informatics; international collaboration; portal; The Arabidopsis Information Resource
TL;DR:
A “one‐stop shop” website, an Arabidopsis “Super‐Portal” to link tools, data resources, programmatic standards, and best practice descriptions for each data type are proposed, which must have community buy‐in and participation in its establishment and development to encourage adoption.
(via Semantic Scholar)
onlinelibrary.wiley.com (publisher PDF)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: February 17, 2020
2019 journal article
Towards microbe-targeted photosensitizers: Synthesis, characterization and in vitro photodynamic inactivation of the tuberculosis model pathogen M. smegmatis by porphyrin-peptide conjugates
JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 23(11-12), 1414–1439.
author keywords: antimicrobial; Mycobacterium smegmatis; peptide; photodynamic inactivation; porphyrin; tuberculosis
TL;DR:
The ability of PPCs to maintain their antimicrobial photodynamic inactivation efficacy when possessing a short cationic peptides for enabling the potential targeting of pathogens in vivo is demonstrated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: February 10, 2020
2019 journal article
Strain-Specific Differences in Survival of Campylobacter spp. in Naturally Contaminated Turkey Feces and Water
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 85(22).
author keywords: Campylobacter; Campylobacter coli; Campylobacter jejuni; turkey; antimicrobial resistance; feces; survival; water
MeSH headings : Animals; Bacterial Typing Techniques; Campylobacter / classification; Campylobacter / physiology; Campylobacter Infections / microbiology; Campylobacter Infections / veterinary; Campylobacter coli / physiology; Campylobacter jejuni / physiology; Cold Temperature; Drug Resistance, Multiple, Bacterial; Feces / microbiology; Microbial Viability; Multilocus Sequence Typing; Polymorphism, Restriction Fragment Length; Turkeys; Water Microbiology
TL;DR:
Examination of survival of Campylobacter, including different strains, in freshly excreted feces from naturally colonized commercial turkey flocks and in suspensions of turkey feces in water from the turkey house revealed that C. jejuni survived longer than C. coli in feces, while the reverse was observed in water.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: December 16, 2019
2019 article
Editorial: Forest Genomics and Biotechnology
Allona, I., Kirst, M., Boerjan, W., Strauss, S., & Sederoff, R. (2019, October 11). FRONTIERS IN PLANT SCIENCE, Vol. 10.
author keywords: tree; forest plantation; conifers; angiosperms; wood
TL;DR:
This paper presents a meta-modelling procedure called “Smart Gene Counting” that allows for apples to be counted as “plants” rather than “ apples” in theiary systems.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: Web Of Science
Added: December 9, 2019
2019 journal article
Inhibition by Marine Algae of Chikungunya Virus Isolated From Patients in a Recent Disease Outbreak in Rio de Janeiro
FRONTIERS IN MICROBIOLOGY, 10.
author keywords: chikungunya; arbovirus; seaweed; antiviral; crude extracts
TL;DR:
The inhibitory effects of seaweed extracts on CHIKV replication were studied and indicate that the algal extracts may be promising novel candidates for the development of therapeutic agents against CHikV infections.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Source: Web Of Science
Added: November 25, 2019
2019 journal article
A Novel Porcine Model for the Study of Cerebrospinal Fluid Dynamics: Development and Preliminary Results
FRONTIERS IN NEUROLOGY, 10.
author keywords: CSF; CSF pressure; optic canal; glaucoma; papilledema; space-flight associated neuro-ocular syndrome
TL;DR:
To investigate CSF flow within the orbit, a model for CSF dynamics was created using three medium-sized pigs and head tilting was performed to highlight the role of gravitational dependence within the subarachnoid space.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: November 18, 2019
2019 review
Plant Leucine-Rich Repeat Receptor Kinase (LRR-RK): Structure, Ligand Perception, and Activation Mechanism
[Review of ]. MOLECULES, 24(17).
author keywords: receptor kinase; LRR-RK; signaling; X-ray crystallography
MeSH headings : Leucine / chemistry; Ligands; Models, Molecular; Peptides / chemistry; Peptides / genetics; Peptides / metabolism; Plant Growth Regulators; Plant Physiological Phenomena; Plant Proteins / chemistry; Plant Proteins / physiology; Plants / genetics; Plants / metabolism; Protein Binding; Protein Conformation; Protein Interaction Domains and Motifs; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / physiology; Signal Transduction; Structure-Activity Relationship
TL;DR:
The structures of many plant LRR-RK receptors in complex with corresponding ligands have been solved by X-ray crystallography, revealing new mechanisms of ligand-induced receptor kinase activation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: October 21, 2019
2019 journal article
Proteomic method to extract, concentrate, digest and enrich peptides from fossils with coloured (humic) substances for mass spectrometry analyses
ROYAL SOCIETY OPEN SCIENCE, 6(8).
author keywords: palaeoproteomics; fossils; humic substances; protein; mass spectrometry; moa
TL;DR:
A method combining multiple recent advances in extraction protocols to both concentrate proteins from fossil specimens with high humic content and remove humics, producing clean samples easily analysed by mass spectrometry (MS).
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(Web of Science)
Source: Web Of Science
Added: September 23, 2019
2019 journal article
Translating antibody-binding peptides into peptoid ligands with improved affinity and stability
JOURNAL OF CHROMATOGRAPHY A, 1602, 284–299.
author keywords: Peptoid ligands; Molecular docking; Affinity chromatography; Antibodies; Protein A mimetic
MeSH headings : Adsorption; Alkalies / chemistry; Amino Acid Sequence; Animals; Antibodies / metabolism; Antibody Affinity; Binding Sites; CHO Cells; Cattle; Cricetinae; Cricetulus; Humans; Immunoglobulin G / isolation & purification; Immunoglobulin G / metabolism; Ligands; Molecular Docking Simulation; Peptides / chemistry; Peptoids / chemistry; Protein Binding; Proteolysis; Temperature
TL;DR:
This work proposes a route for translation utilizing the IgG-binding peptide HWRGWV as reference sequence and forms a method guiding the design of peptoid variants of cognate peptide ligands, and help addressing the challenges that, despite the structural similarity, the peptide-to-peptoid translation presents.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: September 16, 2019
2019 journal article
Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals
Phytochemistry Reviews, 18(6), 1409–1433.
author keywords: Diel; Time of day; Temporal regulation; Circadian rhythms; Photoperiod responses; Environmental regulation; Specialized metabolites; Phenols; Flavonoids; Terpenoids; Alkaloids
TL;DR:
The mechanisms underlying diel and seasonal variations in phytochemical composition are reviewed and examples of temporal regulation of specific compounds within phenol, terpenoid, and alkaloidPhytochemical classes are provided and integrating temporal factors will improve the understanding of the underlying regulatory connections and ultimately improve the quality of phytochemicals.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: August 15, 2019
2019 journal article
Inhibition of Zika Virus Replication by Synthetic Bis-Naphthoquinones
JOURNAL OF THE BRAZILIAN CHEMICAL SOCIETY, 30(8), 1697–1706.
author keywords: Zika virus; Flavivirus; arbovirus; antiviral; bis-naphthoquinones
TL;DR:
Results demonstrate that these bis-naphthoquinones are largely effective in inhibiting the replication of ZIKV.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 12, 2019
2019 journal article
High Prevalence of a Newly Discovered Wutai Mosquito Phasivirus in Mosquitoes from Rio de Janeiro, Brazil
INSECTS, 10(5).
author keywords: insect-specific viruses; Bunyavirus; Phasivirus; Wutai virus; entomological surveillance
TL;DR:
The detection and characterization of a recently discovered bunyavirus corresponding to the Wutai mosquito phasivirus is described, for the first time in South America, and its high prevalence in the Culex spp.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
11. Sustainable Cities and Communities
(OpenAlex)
Source: Web Of Science
Added: August 12, 2019
2019 journal article
A prototype system for dynamically polarized neutron protein crystallography
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 940, 430–434.
author keywords: Polarized target; Dynamic nuclear polarization; Protein crystallography; Neutron scattering
Sources: Web Of Science, NC State University Libraries
Added: July 29, 2019
2019 journal article
Fundamental molecular characterization and comparison of the 0, D-0, and E stage effluents from hardwood pulp bleaching
TAPPI JOURNAL, 18(6), 341–351.
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
Source: Web Of Science
Added: July 22, 2019
2019 article
Warm nights disrupt global transcriptional rhythms in field-grown rice panicles
Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). (Vol. 7). Vol. 7.
TL;DR:
The system-wide transcriptional perturbations suggest that WNT disrupts the tight temporal coordination between internal molecular events and the environment resulting in reduced productivity in rice.
(via Semantic Scholar)
Source: ORCID
Added: July 17, 2019
2019 journal article
Extraction and characterization of lignin from corncob residue after acid-catalyzed steam explosion pretreatment
INDUSTRIAL CROPS AND PRODUCTS, 133, 241–249.
author keywords: Biomass; Steam explosion; Corncob; Enzymatic mild acidolysis lignin; NMR; Antioxidant activity
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
Source: Web Of Science
Added: July 1, 2019
2019 journal article
Novel transcriptional responses to heat revealed by turning up the heat at night
Plant Molecular Biology, 101(1-2), 1–19.
author keywords: Heat shock; Diel regulation; Transcriptional networks; Abiotic stress; Gating of plant responses; Circadian clock
MeSH headings : Acclimatization; Arabidopsis / genetics; Arabidopsis / physiology; Circadian Clocks / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Genome, Plant / genetics; Heat-Shock Proteins / genetics; Heat-Shock Response / genetics; Hot Temperature; Seedlings / genetics; Seedlings / physiology; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
TL;DR:
It is proposed that using time as a perturbagen is an approach that will enhance the understanding of plant regulatory networks and responses to environmental stresses and underpinning new aspects of heat stress responses not previously appreciated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: June 25, 2019
2019 journal article
New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum
J. Exp. Bot, 4.
author keywords: Candidate genes; chilling stress; genome-wide association mapping; genomic regions; root-shoot; sorghum
MeSH headings : Chromosome Mapping; Cold Temperature; Crop Production; Genes, Plant; Genetic Markers; Sorghum / genetics; Stress, Physiological / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: June 25, 2019
2019 journal article
Directions for research and training in plant omics: Big Questions and Big Data
Plant Direct, 3(4).
author keywords: genomics; metabolomics; proteomics; training; transcriptomics
TL;DR:
It is hoped that this article will inspire beginning and established scientists, corporations, and funding agencies to pursue directions in research and training identified by this workshop, capitalizing on the reference species Arabidopsis thaliana and other valuable plant systems.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: June 25, 2019
2019 journal article
Purification and Proteomic Analysis of Alphavirus Particles from Sindbis Virus Grown in Mammalian and Insect Cells
BIO-PROTOCOL, 9(10).
author keywords: Sindbis virus; Mass spectrometry; Virus proteome; Virus purification; Alphavirus; Proteomics
TL;DR:
To evaluate the efficacy of mass spec to determine the proteome of medically important viruses, Sindbis virus (SINV), the prototypical alphavirus was chosen for evaluation and it was found that in addition to the host proteins, SINV non-structural protein 2 (nsP2) was detected within virions grown in all host cells examined.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: June 17, 2019
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