Molecular and Structural Biochemistry

College of Agriculture and Life Sciences

Works Published in 2019

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Displaying works 1 - 20 of 33 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

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2019 journal article

Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future

PLANT DIRECT, 3(1).

By: C. Doherty* , J. Friesner, B. Gregory, A. Loraine, M. Megraw, B. Meyers, N. Provart, R. Slotkin ...

author keywords: Arabidopsis; informatics; international collaboration; portal; The Arabidopsis Information Resource
Sources: Web Of Science, ORCID
Added: February 17, 2020

2019 journal article

Towards microbe-targeted photosensitizers: Synthesis, characterization and in vitro photodynamic inactivation of the tuberculosis model pathogen M. smegmatis by porphyrin-peptide conjugates

JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 23(11-12), 1414–1439.

By: E. Feese n, H. Gracz n, P. Boyle n & R. Ghiladi n 

author keywords: antimicrobial; Mycobacterium smegmatis; peptide; photodynamic inactivation; porphyrin; tuberculosis
Source: Web Of Science
Added: February 10, 2020

2019 journal article

Strain-Specific Differences in Survival of Campylobacter spp. in Naturally Contaminated Turkey Feces and Water

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 85(22).

By: L. Good n, W. Miller*, J. Niedermeyer n, J. Osborne n, R. Siletzky n, D. Carver n, S. Kathariou n

author keywords: Campylobacter; Campylobacter coli; Campylobacter jejuni; turkey; antimicrobial resistance; feces; survival; water
MeSH headings : Animals; Bacterial Typing Techniques; Campylobacter / classification; Campylobacter / physiology; Campylobacter Infections / microbiology; Campylobacter Infections / veterinary; Campylobacter coli / physiology; Campylobacter jejuni / physiology; Cold Temperature; Drug Resistance, Multiple, Bacterial; Feces / microbiology; Microbial Viability; Multilocus Sequence Typing; Polymorphism, Restriction Fragment Length; Turkeys; Water Microbiology
Source: Web Of Science
Added: December 16, 2019

2019 article

Editorial: Forest Genomics and Biotechnology

Allona, I., Kirst, M., Boerjan, W., Strauss, S., & Sederoff, R. (2019, October 11). FRONTIERS IN PLANT SCIENCE, Vol. 10.

By: I. Allona*, M. Kirst *, W. Boerjan *, S. Strauss* & R. Sederoff n

author keywords: tree; forest plantation; conifers; angiosperms; wood
Source: Web Of Science
Added: December 9, 2019

2019 journal article

Inhibition by Marine Algae of Chikungunya Virus Isolated From Patients in a Recent Disease Outbreak in Rio de Janeiro

FRONTIERS IN MICROBIOLOGY, 10.

By: C. Cirne-Santos*, C. Barros *, C. Richter Nogueira*, R. Azevedo *, K. Yamamoto*, G. Silva Meira*, Z. Vasconcelos*, N. Ratcliffe * ...

author keywords: chikungunya; arbovirus; seaweed; antiviral; crude extracts
Source: Web Of Science
Added: November 25, 2019

2019 journal article

A Novel Porcine Model for the Study of Cerebrospinal Fluid Dynamics: Development and Preliminary Results

FRONTIERS IN NEUROLOGY, 10.

By: D. Fleischman *, O. Kaskar n, R. Shams *, X. Zhang*, D. Olson *, C. Zdanski*, B. Thorp*, A. Kuznetsov n, L. Grace n, Y. Lee *

author keywords: CSF; CSF pressure; optic canal; glaucoma; papilledema; space-flight associated neuro-ocular syndrome
Source: Web Of Science
Added: November 18, 2019

2019 review

Plant Leucine-Rich Repeat Receptor Kinase (LRR-RK): Structure, Ligand Perception, and Activation Mechanism

[Review of ]. MOLECULES, 24(17).

By: S. Chakraborty n, B. Nguyen  n, S. Wasti n & G. Xu n

author keywords: receptor kinase; LRR-RK; signaling; X-ray crystallography
MeSH headings : Leucine / chemistry; Ligands; Models, Molecular; Peptides / chemistry; Peptides / genetics; Peptides / metabolism; Plant Growth Regulators; Plant Physiological Phenomena; Plant Proteins / chemistry; Plant Proteins / physiology; Plants / genetics; Plants / metabolism; Protein Binding; Protein Conformation; Protein Interaction Domains and Motifs; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / physiology; Signal Transduction; Structure-Activity Relationship
Source: Web Of Science
Added: October 21, 2019

2019 journal article

Proteomic method to extract, concentrate, digest and enrich peptides from fossils with coloured (humic) substances for mass spectrometry analyses

ROYAL SOCIETY OPEN SCIENCE, 6(8).

By: E. Schroeter n, K. Blackburn n, M. Goshe n & M. Schweitzer n 

author keywords: palaeoproteomics; fossils; humic substances; protein; mass spectrometry; moa
Source: Web Of Science
Added: September 23, 2019

2019 journal article

Translating antibody-binding peptides into peptoid ligands with improved affinity and stability

JOURNAL OF CHROMATOGRAPHY A, 1602, 284–299.

By: T. Bordelon, B. Bobay*, A. Murphy, H. Reese, C. Shanahan, F. Odeh, A. Broussard, C. Kormos, S. Menegatti n 

author keywords: Peptoid ligands; Molecular docking; Affinity chromatography; Antibodies; Protein A mimetic
MeSH headings : Adsorption; Alkalies / chemistry; Amino Acid Sequence; Animals; Antibodies / metabolism; Antibody Affinity; Binding Sites; CHO Cells; Cattle; Cricetinae; Cricetulus; Humans; Immunoglobulin G / isolation & purification; Immunoglobulin G / metabolism; Ligands; Molecular Docking Simulation; Peptides / chemistry; Peptoids / chemistry; Protein Binding; Proteolysis; Temperature
Source: Web Of Science
Added: September 16, 2019

2019 journal article

Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals

Phytochemistry Reviews, 18(6), 1409–1433.

By: D. Liebelt n, J. Jordan n & C. Doherty n 

author keywords: Diel; Time of day; Temporal regulation; Circadian rhythms; Photoperiod responses; Environmental regulation; Specialized metabolites; Phenols; Flavonoids; Terpenoids; Alkaloids
Source: ORCID
Added: August 15, 2019

2019 journal article

Inhibition of Zika Virus Replication by Synthetic Bis-Naphthoquinones

JOURNAL OF THE BRAZILIAN CHEMICAL SOCIETY, 30(8), 1697–1706.

By: D. Gonzaga, R. Gomes, R. Marra, F. Silva, M. Gomes, D. Ferreira*, R. Santos, A. Pinto ...

author keywords: Zika virus; Flavivirus; arbovirus; antiviral; bis-naphthoquinones
Source: Web Of Science
Added: August 12, 2019

2019 journal article

High Prevalence of a Newly Discovered Wutai Mosquito Phasivirus in Mosquitoes from Rio de Janeiro, Brazil

INSECTS, 10(5).

By: M. Ribeiro *, T. Ayllon *, V. Malirat *, D. Portela Camara *, C. Giordano Dias, G. Louzada*, D. Fernandes-Ferreira n, R. Medronho *, R. Acevedo*

author keywords: insect-specific viruses; Bunyavirus; Phasivirus; Wutai virus; entomological surveillance
Source: Web Of Science
Added: August 12, 2019

2019 journal article

A prototype system for dynamically polarized neutron protein crystallography

NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 940, 430–434.

By: J. Pierce*, L. Crow *, M. Cuneo *, M. Edwards*, K. Herwig*, A. Jennings*, A. Jones*, L. Li* ...

author keywords: Polarized target; Dynamic nuclear polarization; Protein crystallography; Neutron scattering
Sources: Web Of Science, ORCID
Added: July 29, 2019

2019 journal article

Fundamental molecular characterization and comparison of the 0, D-0, and E stage effluents from hardwood pulp bleaching

TAPPI JOURNAL, 18(6), 341–351.

By: J. Jardim*, X. Du, P. Hart*, L. Lucia* , H. Jameel*, H. Chang*, H. Gracz*

Source: Web Of Science
Added: July 22, 2019

2019 article

Warm nights disrupt global transcriptional rhythms in field-grown rice panicles

Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). (Vol. 7). Vol. 7.

By: J. Desai  n, L. Lawas *, A. Valente *, A. Leman*, D. Grinevich n, S. Jagadish*, C. Doherty n 

Source: ORCID
Added: July 17, 2019

2019 journal article

Extraction and characterization of lignin from corncob residue after acid-catalyzed steam explosion pretreatment

INDUSTRIAL CROPS AND PRODUCTS, 133, 241–249.

By: X. Zhang n, J. Zhu  n, L. Sun, Q. Yuan *, G. Cheng * & D. Argyropoulos n 

author keywords: Biomass; Steam explosion; Corncob; Enzymatic mild acidolysis lignin; NMR; Antioxidant activity
Source: Web Of Science
Added: July 1, 2019

2019 journal article

Novel transcriptional responses to heat revealed by turning up the heat at night

Plant Molecular Biology, 101(1-2), 1–19.

By: D. Grinevich n, J. Desai  n, K. Stroup n, J. Duan n, E. Slabaugh  n & C. Doherty n 

author keywords: Heat shock; Diel regulation; Transcriptional networks; Abiotic stress; Gating of plant responses; Circadian clock
MeSH headings : Acclimatization; Arabidopsis / genetics; Arabidopsis / physiology; Circadian Clocks / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Genome, Plant / genetics; Heat-Shock Proteins / genetics; Heat-Shock Response / genetics; Hot Temperature; Seedlings / genetics; Seedlings / physiology; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
Source: ORCID
Added: June 25, 2019

2019 journal article

New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum

J. Exp. Bot, 4.

By: N. Moghimi*, J. Desai  n, R. Bheemanahalli *, S. Impa *, A. Vennapusa*, D. Sebela*, R. Perumal*, C. Doherty n , S. Jagadish

author keywords: Candidate genes; chilling stress; genome-wide association mapping; genomic regions; root-shoot; sorghum
MeSH headings : Chromosome Mapping; Cold Temperature; Crop Production; Genes, Plant; Genetic Markers; Sorghum / genetics; Stress, Physiological / genetics
Source: ORCID
Added: June 25, 2019

2019 journal article

Directions for research and training in plant omics: Big Questions and Big Data

Plant Direct, 3(4).

By: C. Argueso*, S. Assmann *, K. Birnbaum *, S. Chen *, J. Dinneny *, C. Doherty n , A. Eveland *, J. Friesner * ...

author keywords: genomics; metabolomics; proteomics; training; transcriptomics
Source: ORCID
Added: June 25, 2019

2019 journal article

Purification and Proteomic Analysis of Alphavirus Particles from Sindbis Virus Grown in Mammalian and Insect Cells

BIO-PROTOCOL, 9(10).

By: R. Hernandez n, T. Glaros*, G. Rizzo* & D. Ferreira n

author keywords: Sindbis virus; Mass spectrometry; Virus proteome; Virus purification; Alphavirus; Proteomics
Source: Web Of Science
Added: June 17, 2019