Works Published in 2015
Displaying works 41 - 60 of 86 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2015 article
Persistent Virus-Induced Gene Silencing in Asymptomatic Accessions of Arabidopsis
PLANT FUNCTIONAL GENOMICS: METHODS AND PROTOCOLS, 2ND EDITION, Vol. 1284, pp. 305–322.
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / virology; Begomovirus / physiology; Cloning, Molecular / methods; Gene Silencing; Gene Targeting / methods; Genetic Vectors / genetics; Host-Pathogen Interactions / genetics
TL;DR:
It is shown that genetic variation in the vast collection of Arabidopsis accessions can be leveraged to ameliorate viral symptomology that accompanies the VIGS procedure.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Intercontinental comparison of habitat levels of invasion between temperate North America and Europe
ECOLOGY, 96(12), 3363–3373.
author keywords: alien species; Czech Republic; habitats; level of invasion; North and South Carolina; plant communities; vascular plants
MeSH headings : Climate; Czech Republic; Ecosystem; Introduced Species; North Carolina; Plants / classification; South Carolina
TL;DR:
Comparing the levels of invasion in analogous habitats of two environmentally similar regions in temperate North America and Europe using comprehensive vegetation-plot databases suggests that these levels are driven by similar mechanisms in distant regions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2015 article
Virus-Induced Gene Silencing of Fiber-Related Genes in Cotton
PLANT GENE SILENCING: METHODS AND PROTOCOLS, Vol. 1287, pp. 219–234.
author keywords: Virus-induced gene silencing; VIGS; Cotton fiber; GFP; Silencing; Semiquantitative RT-PCR
MeSH headings : Agrobacterium / genetics; Agrobacterium / physiology; Agrobacterium / virology; Cotton Fiber; Cotyledon / genetics; Cotyledon / growth & development; Cotyledon / microbiology; Geminiviridae / genetics; Gene Silencing; Gene Transfer Techniques; Genes, Plant; Genetic Vectors / genetics; Gossypium / genetics; Gossypium / growth & development; Gossypium / microbiology; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Plants, Genetically Modified / growth & development; Plants, Genetically Modified / metabolism; Plants, Genetically Modified / microbiology; Recombinant Proteins / genetics; Recombinant Proteins / metabolism
TL;DR:
The use of Green Fluorescent Protein (GFP) is described as a marker for identifying silenced tissues in reproductive tissues, a procedure that requires the use of transgenic plants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Phylogenomics of polyploidy Fothergilla (Hamamelidaceae) by RAD-tag based GBS—Insights into species origin and effects of software pipelines
Journal of Systematics and Evolution, 53(5), 432–447.
author keywords: Fothergilla; hybridization; illumina sequencing; phylogenomics; RAD-tag-based GBS; polyploidy
TL;DR:
This study demonstrates the power of combining GBS data with Sanger sequencing in reconstructing the evolutionary network of polyploid lineages and shows substantial differences in inferred phylogenies.
(via Semantic Scholar)
onlinelibrary.wiley.com (publisher PDF)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
2015 article
Phylogenomic approaches to deciphering the tree of life
Wen, J., Liu, J., Ge, S., Xiang, Q.-Y., & Zimmer, E. A. (2015, September). JOURNAL OF SYSTEMATICS AND EVOLUTION, Vol. 53, pp. 369–370.
TL;DR:
With the advent and rapid development of next-generation sequencing (NGS), phylogenomics has gained more popularity in the last few years and is now being employed by many members of the evolutionary and systematics community.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2015 journal article
Metabolic Response of Clostridium ljungdahlii to Oxygen Exposure
Applied and Environmental Microbiology, 81(24), 8379–8391.
Ed(s): R. Parales
MeSH headings : Acetates / metabolism; Aldehyde Oxidoreductases / metabolism; Base Sequence; Biofuels / microbiology; Bioreactors / microbiology; Carbon Dioxide / metabolism; Clostridium / enzymology; Clostridium / growth & development; Clostridium / metabolism; DNA, Bacterial / genetics; Energy Metabolism / physiology; Ethanol / metabolism; Fermentation / physiology; Gene Expression / drug effects; Molecular Sequence Data; Oxidation-Reduction / drug effects; Oxidoreductases / metabolism; Oxygen / metabolism; Oxygen / pharmacology; Reactive Oxygen Species / metabolism; Sequence Alignment; Sequence Analysis, DNA
TL;DR:
The metabolic responses of higher ethanol production and oxygen/ROS detoxification were found to be linked by cofactor management and substrate and energy metabolism and new genetic targets to generate C. ljungdahlii strains that produce more ethanol and are more tolerant to syngas contaminants are provided.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
2015 journal article
Characterization of Cercospora nicotianae Hypothetical Proteins in Cercosporin Resistance
PLOS ONE, 10(10).
MeSH headings : Ascomycota / genetics; Ascomycota / metabolism; Drug Resistance, Fungal / drug effects; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Regulation, Fungal / drug effects; Mutation; Neurospora crassa / genetics; Neurospora crassa / metabolism; Perylene / analogs & derivatives; Perylene / pharmacology
TL;DR:
Analysis of 71cR conserved domains and secondary and tertiary structure identify the protein as having an NTF2-like superfamily DUF1348 domain with unknown function, to be intracellular and localized in the cytosol, and to have similarities to proteins in the steroid delta-isomerase family.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Algal ancestor of land plants was preadapted for symbiosis
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(43), 13390–13395.
Contributors: P. Delaux *, G. Radhakrishnan*, D. Jayaraman*, J. Cheema*, M. Malbreil*, J. Volkening *, H. Sekimoto *, T. Nishiyama *
author keywords: symbiosis; plant evolution; algae; plant-microbe interactions; phylogeny
MeSH headings : Adaptation, Biological / genetics; Adaptation, Biological / physiology; Base Sequence; Biological Evolution; Chlorophyta / genetics; Chlorophyta / physiology; Closterium / genetics; Closterium / growth & development; DNA Primers / genetics; Embryophyta / genetics; Embryophyta / physiology; Fungi / physiology; Hepatophyta / genetics; Hepatophyta / growth & development; Likelihood Functions; Medicago truncatula / microbiology; Models, Genetic; Molecular Sequence Data; Mycorrhizae / physiology; Phylogeny; Plant Proteins / genetics; Plant Roots / microbiology; RNA, Plant / genetics; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, RNA; Spirogyra / genetics; Spirogyra / growth & development; Symbiosis / genetics; Symbiosis / physiology
TL;DR:
It is proposed that the most recent common ancestor of extant land plants and green algae was preadapted for symbiotic associations and employed these gene networks to colonize land successfully.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018
2015 conference paper
A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana
Bioinformatics research and applications (isbra 2015), 9096, 138–149.
Source: NC State University Libraries
Added: August 6, 2018
2015 journal article
A Genome-Wide Scenario of Terpene Pathways in Self-pollinated Artemisia annua
MOLECULAR PLANT, 8(11), 1580–1598.
author keywords: Artemisia annua; artemisinin; terpene; metabolic profiling; pyrosequencing
MeSH headings : Artemisia annua / genetics; Artemisia annua / metabolism; Artemisinins / metabolism; Gas Chromatography-Mass Spectrometry; Gene Expression Profiling; Genes, Plant; Metabolomics; Pollination / genetics; Self-Fertilization / genetics; Terpenes / metabolism
TL;DR:
An integrated approach combining metabolomics, transcriptomics, and gene function analyses was used to characterize gene-to-terpene and terpene pathway scenarios in a self-pollinating variety of Artemisia annua, identifying 47 genes that mapped to the artemisinin, non-amorphadiene sesquiterpene, monoterpenes, triterpenes and mevalonate pathways.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2015 journal article
Membrane transporters in self resistance of Cercospora nicotianae to the photoactivated toxin cercosporin
Current Genetics, 61(4), 601–620.
author keywords: Perylenequinone; Photosensitizer resistance; ABC transporter; MFS transporter; Targeted gene disruption; CRG1; CnATR1; CnCFP
MeSH headings : ATP-Binding Cassette Transporters / genetics; ATP-Binding Cassette Transporters / metabolism; Antifungal Agents / metabolism; Antifungal Agents / pharmacology; Drug Resistance, Fungal / genetics; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Regulation, Fungal; Gene Targeting; Membrane Transport Proteins / genetics; Membrane Transport Proteins / metabolism; Neurospora crassa / drug effects; Neurospora crassa / genetics; Neurospora crassa / metabolism; Perylene / analogs & derivatives; Perylene / metabolism; Perylene / pharmacology; Photosensitizing Agents / metabolism; Photosensitizing Agents / pharmacology; Phylogeny; Saccharomycetales / classification; Saccharomycetales / drug effects; Saccharomycetales / genetics; Saccharomycetales / metabolism; Singlet Oxygen / metabolism; Uracil / metabolism; Zinc / metabolism
TL;DR:
It is concluded that cercosporin autoresistance in Cercospora is mediated by multiple genes, and that the fungus compensates for mutations by up-regulation of other resistance genes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
2015 journal article
Discovery of a novel amino acid racemase through exploration of natural variation in Arabidopsis thaliana
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(37), 11726–11731.
author keywords: D-amino acid; racemase; genome-wide association; secondary metabolism; natural variation
MeSH headings : Amino Acid Isomerases / genetics; Amino Acid Isomerases / physiology; Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis Proteins / genetics; Arabidopsis Proteins / physiology; Chromatography, High Pressure Liquid; Chromatography, Liquid; Chromosome Mapping; Gene Expression Regulation, Plant; Genetic Variation; Genome-Wide Association Study; Genomics; Genotype; Isoleucine / analogs & derivatives; Isoleucine / chemistry; Mass Spectrometry; Metabolomics; Mutation; Quantitative Trait Loci; Stereoisomerism
TL;DR:
This finding provides the first functional characterization of a eukaryotic member of a large and widely conserved phenazine biosynthesis protein PhzF-like protein family, and demonstrates that exploitation of natural metabolic variation by integrating metabolomics with genome-wide association is a powerful approach for functional genomics study of specialized metabolism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2015 journal article
Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response
PLOS ONE, 10(8).
Contributors: A. Koryachko n, A. Matthiadis n, D. Muhammad n, J. Foret*, S. Brady *, J. Ducoste n , J. Tuck n , T. Long n , C. Williams n
MeSH headings : Algorithms; Arabidopsis / genetics; Arabidopsis / metabolism; Databases, Genetic; Gene Expression Regulation, Plant; Iron Deficiencies; Sequence Alignment; Software; Transcriptome
TL;DR:
It is proposed that this tool can be used successfully for similar time course datasets to extract additional information and infer reliable regulatory connections for individual genes, and served as a proof of concept emphasizing the utility of the CDAA for identifying unknown or missing nodes in regulatory cascades.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018
2015 journal article
Bird and Scarecrow proteins organize tissue formation in Arabidopsis roots
Science, 350(6259), 426–430.
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / metabolism; Cell Division / genetics; Cell Lineage / genetics; Gene Expression Regulation, Plant; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Transcription Factors / metabolism; Transcription, Genetic
TL;DR:
It is shown that the BIRDs and SCARECROW regulate lineage identity, positional signals, patterning, and formative divisions throughout Arabidopsis root growth, ensuring developmental plasticity.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2015 journal article
Bacteria species and solution pH effect postharvest quality of cut Zinnia elegans
SCIENTIA HORTICULTURAE, 194, 71–78.
author keywords: Cut flower; Postharvest; Phytopathogens; Biocontrol bacteria; Zinnia elegans
TL;DR:
This research shows that for Zinnia the bacteria species that has a primary effect on vase life, not necessarily the concentration of bacteria in the vase solution, is found in the acidic solutions and not the preservative solutions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
A novel gateway-compatible binary vector series (PC-GW) for flexible cloning of multiple genes for genetic transformation of plants
PLASMID, 81, 55–62.
Contributors: J. Dalal n, R. Yalamanchili n, C. La Hovary n, M. Ji n, M. Rodriguez-Welsh n, D. Aslett n, S. Ganapathy n, A. Grunden n , H. Sederoff n , R. Qu n
author keywords: Gateway; Plant transformation; Agrobacterium; Gene stacking
MeSH headings : Cloning, Molecular / methods; Gene Expression; Gene Order; Genes, Reporter; Genetic Vectors / genetics; Plants, Genetically Modified; Plasmids / genetics; Transformation, Genetic; Transgenes
TL;DR:
The PC-GW vectors provide choices for selectable markers, cloning methods, and can accommodate up to eight gene constructs in a single T-DNA, thereby significantly reducing the number of transformations or crosses needed to generate multi-transgene expressing plants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018
2015 journal article
Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica
BMC Genomics, 16(1).
author keywords: Rhizoctonia solani (AG3 Rhs1AP); Serratia proteamaculans (S4); Serratia plymuthica (AS13); Biological control; Bacterial-fungal interactions; RNA sequencing; Transcriptome; Fungal gene expression
MeSH headings : Antibiosis; Fungal Proteins / genetics; Gene Expression Profiling / methods; Gene Expression Regulation, Fungal; Gene Ontology; RNA, Fungal / analysis; RNA, Messenger / analysis; Rhizoctonia / genetics; Rhizoctonia / physiology; Rhizosphere; Sequence Analysis, RNA / methods; Serratia / physiology; Species Specificity
TL;DR:
A global transcriptome profiling of Rhizoctonia solani generated a novel dataset describing the functional response of the phytopathogen R. solani AG3 to the plant-associated Serratia bacteria S4 and AS13, revealing a general shift in fungal gene expression.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
2015 journal article
Stomata morphological traits in two different genotypes of Populus nigra L.
IFOREST-BIOGEOSCIENCES AND FORESTRY, 8, 547–551.
author keywords: Giant Stomata; Poplar Clones; Genotypes; Populus; SEM
TL;DR:
The characteristics of ordinary and giant stomata in leaves of two black poplar genotypes (58-861 with large leaves from northern Italy, and Poli with small leaves from southern Italy) are described, providing evidence of different stomatal types in matureblack poplar leaves, and new information regarding the presence and potential role of giant stromata in black Populus nigra leaves.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2
CELL, 163(3), 684–697.
Contributors: C. Merchante n, J. Brumos n, J. Yun n, Q. Hu n, K. Spencer n, P. Enríquez n, B. Binder *, S. Heber n , A. Stepanova n , J. Alonso n
MeSH headings : 3' Untranslated Regions; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; DNA-Binding Proteins; Ethylenes / metabolism; F-Box Proteins / genetics; Gene Expression Regulation, Plant; Nuclear Proteins / metabolism; Protein Biosynthesis; RNA, Messenger / metabolism; Receptors, Cell Surface / metabolism; Ribosomes / metabolism; Signal Transduction; Transcription Factors / metabolism
TL;DR:
Characterization of one of the targets of this translation regulatory machinery, the ethylene signaling component EBF2, indicates that the signaling molecule EIN2 and the nonsense-mediated decay proteins UPFs play a central role in this ethylene-induced translational response.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2015 journal article
Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei
PLANT MOLECULAR BIOLOGY, 89(4-5), 339–351.
author keywords: Cell cycle; DNA synthesis; Grass
MeSH headings : Cell Nucleus / genetics; Cell Nucleus / metabolism; DNA Replication / genetics; DNA Replication Timing / genetics; DNA, Plant / biosynthesis; DNA, Plant / genetics; Endoreduplication / genetics; Genes, Plant; Imaging, Three-Dimensional; Meristem / genetics; Meristem / growth & development; Meristem / metabolism; Models, Biological; S Phase / genetics; Zea mays / genetics; Zea mays / growth & development; Zea mays / metabolism
TL;DR:
3D quantitative analysis of DNA replication and endoreduplication in nuclei from pulse-labeled developing maize root tips revealed that maize euchromatin exists as an intermingled mixture of two components distinguished by their condensation state and replication timing.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018
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