Works Published in 2023
Displaying works 21 - 40 of 89 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2023 journal article
Structural analysis and functional evaluation of the disordered ß-hexosyltransferase region from <i>Hamamotoa (Sporobolomyces) singularis</i>
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 11.
author keywords: disorder; expression; kinetics; mutagenesis; transglycosylation; Hamamotoa singularis
TL;DR:
Functional analysis of each glycosylation site found within the C-terminal domain revealed reduced total secreted protein activity, indicating that glycosylation at all four locations is required by the host for the secretion of active enzyme and independent of the removed disordered N-terminal region.
(via Semantic Scholar)
www.frontiersin.org (publisher PDF)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: December 31, 2023
2023 journal article
Identification and biosynthesis of plant papanridins, a group of novel oligomeric flavonoids
MOLECULAR PLANT, 16(11), 1773–1793.
author keywords: flavanol polymerase; papanridin; flavan-3-ol; flav-2-en-3-ol; flavan-; flaven
TL;DR:
A new polymerization pathway of a group of novel oligomeric flavonoids in plants is reported, termed 'papanridins', which will drive further investigations across plant science, nutrition, and animal sciences, seeking to unravel the significance of papanridin in both plants and food products.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: December 18, 2023
2023 journal article
Agrobacterium tumefaciens-mediated transformation of Nigrospora sp. isolated from switchgrass leaves and antagonistic toward plant pathogens
JOURNAL OF MICROBIOLOGICAL METHODS, 215.
author keywords: Agrobacterium tumefaciens; Bipolaris maydis; Endophytic fungi; Fungal transformation; Nigrospora sp.; Parastagonospora nodorum
Source: Web Of Science
Added: December 18, 2023
2023 article
HISTONE DEACETYLASE19 Controls Ovule Number Determination and Transmitting Tract Differentiation
Manrique, S., Cavalleri, A., Guazzotti, A., Villarino, G. H., Simonini, S., Bombarely, A., … Colombo, L. (2023, December 7). PLANT PHYSIOLOGY, Vol. 12.
TL;DR:
Factors required for the downregulation of STM in the CMM, which is necessary for organogenesis and tissue differentiation, are identified.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: December 18, 2023
2023 journal article
H2A.X promotes endosperm-specific DNA methylation in <i>Arabidopsis thaliana</i>
BMC PLANT BIOLOGY, 23(1).
author keywords: Epigenetics; DNA demethylation; H2A.X; DEMETER; DNA damage response; DNA glycosylase
TL;DR:
The authors' genome-wide methylation analyses suggest that H2A.X is required to maintain DNA methylation homeostasis in the unique chromatin environment of the Arabidopsis endosperm.
(via Semantic Scholar)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: December 16, 2023
2023 article
Effective seed sterilization methods require optimization across maize genotypes
Parnell, J. J., Pal, G., Awan, A., Vintila, S., Houdinet, G., Hawkes, C. V., … Kleiner, M. (2023, December 15).
Source: ORCID
Added: December 16, 2023
2023 journal article
Two Arabidopsis promoters drive seed-coat specific gene expression in pennycress and camelina
PLANT METHODS, 19(1).
author keywords: Seed coat; Promoter; Pennycress; Camelina; Biofuel
TL;DR:
This work demonstrates that AtTT10 and AtDP1 promoters are suitable for driving gene expression in the outer integument of the seed coat in pennycress and camelina.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: December 11, 2023
2023 article
Exploring the Prebiotic Activities of Proanthocyanidins on a Platform Using the Three-Dimensionally (3D)-Cultured Organoids
Xi, L., Wang, F., Cagle, D., Zhu, Y., Odle, J., & Xie, D. (2023, November 6). JOURNAL OF ANIMAL SCIENCE, Vol. 101, pp. 355–356.
author keywords: antibiotics; Interleukins; organoids
TL;DR:
It is concluded that epigallocatechin gallate is a potential PA monomer with all prebiotic characteristics and its applicable values in feedstuff and food supply should be studied in vivo studies in domestic (food) animals with and without antigen challenges.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: December 11, 2023
2023 article
Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies
Bartlett, A., Blakeley-Ruiz, J. A., Richie, T., Theriot, C. M., & Kleiner, M. (2023, December 7).
TL;DR:
Large quantities of microbial DNA and protein are found in casein-based diets, which highlight the necessity of evaluating diet samples in diet-microbiota studies to ensure that potential microbial content of the diet can be accounted for in microbiome measurements.
(via Semantic Scholar)
Source: ORCID
Added: December 8, 2023
2023 article
Complete genome sequence of <i>Bacillus thuringiensis</i> strain RC340, isolated from a temperate forest soil sample in New England
Sullivan, B., Kitzmiller, C. E., Tran, W. C., Choudoir, M., Simoes, R., Dayarathne, N., & DeAngelis, K. M. (2023, October 31). (D. Rasko, Ed.). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 10.
Ed(s): D. Rasko
author keywords: environmental microbiology; DNA sequencing; climate change; soil microbiology; microbiology; genome analysis
TL;DR:
The complete genome sequence of Bacillus thuringiensis strain RC340, isolated from an environmental microbiology experiment soil sample, sequenced by GridION is presented.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: December 4, 2023
2023 journal article
Arabidopsis telomerase takes off by uncoupling enzyme activity from telomere length maintenance in space
NATURE COMMUNICATIONS, 14(1).
TL;DR:
No changes in telomere length in space-flown Arabidopsis seedlings are observed, despite a dramatic increase in telomerase activity (up to 150-fold in roots), as well as elevated genome oxidation, and it is proposed that genome oxidation is inversely correlated with telomersase activity levels.
(via Semantic Scholar)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: November 30, 2023
2023 journal article
Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response
BMC GENOMICS, 24(1).
author keywords: Iron deficiency; Epidermis; Arabidopsis; Logistic regression; Gene regulatory network; RNA-seq
TL;DR:
Machine learning approaches combined with additional static data identified putative regulators of -Fe response that would not have been identified solely through transcriptomic profiles and reveal how developmental and general stress responses within the epidermis may act upstream of more specialized -Fe responses for Fe uptake.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: November 27, 2023
2023 article
Mechanism of high energy efficiency of carbon fixation by sulfur-oxidizing symbionts revealed by single-cell analyses and metabolic modeling
Kleiner, M., Polerecky, L., Lott, C., Bergin, C., Häusler, S., Liebeke, M., … Dubilier, N. (2023, November 26).
TL;DR:
This study combined single-cell analyses of CO2 fixation, CO2 release and bulk uptake, with measurements of O2 respiration, sulfur content, and polyhydroxyalkanoate content, as well as mathematical modelling to investigate how energy derived from sulfur oxidation drives carbon fluxes within the symbiosis and between the holobiont and its habitat found that under aerobic conditions without external energy sources only the primary symbiont relied on internal sulfur storage.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy
(OpenAlex)
Source: ORCID
Added: November 27, 2023
2023 journal article
A telomere-to-telomere reference genome provides genetic insight into the pentacyclic triterpenoid biosynthesis in Chaenomeles speciosa
HORTICULTURE RESEARCH, 10(10).
TL;DR:
The use of an integrative approach involving PacBio HiFi (third-generation) sequencing and Hi-C scaffolding to assemble a high-quality telomere-to-telomere genome of C. speciosa not only provides a valuable resource to enhance understanding of the biosynthesis of medicinal compounds in tissues, but also promotesUnderstanding of the evolution of the Rosaceae.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: November 20, 2023
2023 journal article
Draft genome sequence of <i>Paenibacillus</i> sp. strain RC67, an isolate from a long-term forest soil warming experiment in Petersham, Massachusetts
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 10.
author keywords: soil microbiology; microbial ecology; bioinformatics
TL;DR:
Paenibacillus strain RC67 was isolated from the Harvard Forest long-term soil warming experiment and genome annotation suggests that the isolate is of a novel bacterial species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: November 6, 2023
2023 article
Back to the Future: Re-Engineering the Evolutionarily Lost Arbuscular Mycorrhiza Host Trait to Improve Climate Resilience for Agriculture
Hornstein, E. D., & Sederoff, H. (2023, September 13). CRITICAL REVIEWS IN PLANT SCIENCES, Vol. 9.
author keywords: Agriculture; climate change; genetic engineering; microbiome; mycorrhizae; molecular biology; symbiosis; sustainability
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: October 10, 2023
2023 review
Tolyporphins-Exotic Tetrapyrrole Pigments in a Cyanobacterium-A Review
[Review of ]. MOLECULES, 28(16).
author keywords: bacteriochlorin; bioinformatics; biosynthesis; chlorophyll; cyanobacteria; field biology; gene cluster; genomics; natural products; tolyporphins
TL;DR:
The identification of putative biosynthetic gene clusters in the HT-58-2 cyanobacterial genome and accompanying studies suggest a new biosynthesis paradigm in the tetrapyrrole arena, which stands alone in the large pigments-of-life family.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: October 2, 2023
2023 article
Phosphate starvation: response mechanisms and solutions
Madison, I., Gillan, L., Peace, J., Gabrieli, F., Broeck, L., Jones, J. L., & Sozzani, R. (2023, August 23). (D. Ort, Ed.). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 8.
Ed(s): D. Ort
author keywords: Nutrient uptake; nutrient sensing; phosphorus; Pi
TL;DR:
This review describes regulatory mechanisms used by specific tissues in the root apical meristem to sense and uptake phosphate from the rhizosphere and overviews the major mechanism of plant systemic phosphate starvation responses.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: September 18, 2023
2023 journal article
High-quality genomes of Paenibacillus spp. RC334 and RC343, isolated from a long-term forest soil warming experiment
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 8.
Ed(s): D. Baltrus
author keywords: soil microbiology; climate change
TL;DR:
The assembly and annotation of the two high-quality draft genomes for these isolates of Paenibacillus spp.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: September 11, 2023
2023 article
Identifying the enzyme responsible for initiating aerobic acetylene metabolism in Rhodococcus rhodochrous ATCC 33258
JOURNAL OF BIOLOGICAL CHEMISTRY, Vol. 299, pp. S369–S369.
Sources: Web Of Science, NC State University Libraries
Added: September 11, 2023
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