Works Published in 2008

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Displaying works 21 - 40 of 42 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2008 journal article

Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding

BIOCHEMISTRY, 47(23), 6117–6129.

By: F. Vendeix n, A. Dziergowska n, E. Gustilo n, W. Graham n, B. Sproat n, A. Malkiewicz n, P. Agris n

MeSH headings : Anticodon / chemistry; Base Sequence; Binding Sites; Codon / chemistry; Codon / metabolism; Dinucleoside Phosphates / chemistry; Escherichia coli / genetics; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; Oligoribonucleotides / chemistry; RNA, Bacterial / chemistry; RNA, Bacterial / genetics; RNA, Transfer / genetics; Ribosomes / metabolism
TL;DR: Results clearly demonstrate that the xo (5)U 34-type modifications order the anticodon loop prior to A-site codon binding for an expanded codon reading, possibly reducing an entropic energy barrier to codonbinding. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

1-alkenes: Ethylene action compounds or ethylene competitive inhibitors in plants

PLANT SCIENCE, 175(1-2), 145–148.

By: E. Sisler n

author keywords: 1-alkenes; competitive inhibitors; ethylene; ethylene action compounds; ethylene receptor
TL;DR: Ethylene and propene gave a typical ethylene ripening response in bananas, but 1-butene did not induce ripening, and the binding site does not appear to be restricted. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2008 review

tRNA's modifications bring order to gene expression

[Review of ]. Current Opinion in Microbiology, 11(2), 134–140.

By: E. Gustilo, A. Franck & P. Agris

Source: NC State University Libraries
Added: August 6, 2018

2008 article

New sources and instrumentation for neutrons in biology

Teixeira, S. C. M., Zaccai, G., Ankner, J., Bellissent-Funel, M. C., Bewley, R., Blakeley, M. P., … Weiss, K. (2008, April 18). CHEMICAL PHYSICS, Vol. 345, pp. 133–151.

By: S. Teixeira*, G. Zaccai*, J. Ankner*, M. Bellissent-Funel*, R. Bewley*, M. Blakeley*, P. Callow*, L. Coates* ...

author keywords: neutron scattering; neutron crystallography; small angle neutron scattering; reflectometry; inelastic neutron scattering; quasi-elastic neutron scattering; proteins; membranes; macromolecular structure and dynamics
TL;DR: A broad and significant effort towards instrumental and methodological development to facilitate biology experiments at neutron sources worldwide is reviewed. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus

TREE PHYSIOLOGY, 28(6), 885–897.

By: A. Adomas n, G. Heller n, A. Olson*, J. Osborne n, M. Karlsson*, J. Nahalkova*, L. Van Zyl n, R. Sederoff n ...

author keywords: defence; ectomycorrhiza; Heterobasidion annostan; Laccaria bicolor; microarray; recognition; Trichoderma aureoviride
MeSH headings : Basidiomycota / pathogenicity; Cell Communication; Microscopy, Electron, Scanning; Pinus sylvestris / genetics; Pinus sylvestris / microbiology; Pinus sylvestris / physiology; Plant Diseases / microbiology; Plant Proteins / metabolism; Plant Roots / microbiology; Plant Roots / ultrastructure; Ribosomal Proteins / biosynthesis; Ribosomal Proteins / metabolism; Seedlings / microbiology; Transcription, Genetic; Trichoderma / pathogenicity; Trichoderma / ultrastructure
TL;DR: There were specific transcriptional responses depending on whether the conifer roots were challenged with mutualistic, saprotrophic or pathogenic fungi, suggesting that pine trees are able to recognize diverse fungal species and specifically distinguish whether they are pathogenic, neutral or beneficial microbial agents. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Mutations that alter a repeated ACCA element located at the 5 ' end of the Potato virus X genome affect RNA accumulation

VIROLOGY, 378(1), 133–141.

By: M. Park, S. Kwon, H. Choi, C. Hemenway* & K. Kim

author keywords: PVX; ACCA elements; RNA interaction; replication
MeSH headings : 5' Untranslated Regions / chemistry; 5' Untranslated Regions / genetics; Base Sequence; Gene Deletion; Genome, Viral / genetics; Molecular Sequence Data; Mutagenesis, Site-Directed; Mutation; Plant Leaves / virology; Potexvirus / genetics; Potexvirus / pathogenicity; RNA, Viral / metabolism; Repetitive Sequences, Nucleic Acid / genetics; Sequence Alignment; Tandem Repeat Sequences; Tobacco / virology; Virus Replication
TL;DR: Detailed characterization of the first ACCA element indicated that duplication of ACCA at nt 10-13 (nt 10-17, ACCAACCA) caused severe symptom development as compared to that of wild type, while deletion of the single element or tripling of this element caused reduced symptom development. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

BMC GENOMICS, 9.

MeSH headings : Alleles; DNA, Complementary / biosynthesis; Eucalyptus / genetics; Expressed Sequence Tags; Gene Library; Genes, Plant; Genetic Variation; Haplotypes; Polymorphism, Single Nucleotide / genetics; Reproducibility of Results; Sequence Analysis, DNA / methods; Software; Transcription, Genetic
TL;DR: It is demonstrated that SNPs sampled in large-scale with 454 pyrosequencing can be used to detect evolutionary signatures among genes, providing one of the first genome-wide assessments of nucleotide diversity and Ka/Ks for a non-model plant species. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Titanium Interlayer Mediated Epitaxy of CoSi2 on Si1-xGex

THIN SOLID FILMS, 516(8), 1809–1817.

author keywords: CoSi2; Si1-xGex; epitaxy; Ti interlayer; TIME process; XANES; XRD; pinhole formation
Source: Web Of Science
Added: August 6, 2018

2008 review

Targeting cell death in tumors by activating Caspases

[Review of ]. Current Cancer Drug Targets, 8(2), 98–109.

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Assessment of the potency of 1-substituted cyclopropenes to counteract ethylene-induced processes in plants

PLANT GROWTH REGULATION, 55(2), 101–113.

By: A. Apelbaum*, E. Sisler n, X. Feng & R. Goren*

author keywords: abscission; avocado; citrus; ethylene; 1-methylcyclopropene (1-MCP); pea; ripening; tomatoes
TL;DR: The relationship between ethylene and the inhibitors was found to be of an apparent non-competitive nature and all the fruits treated with the various inhibitors resumed normal ripening after recovery from the inhibition which is crucial when considering the putative inhibitors for practical use. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor

BMC Plant Biology, 8.

By: G. Heller, A. Adomas, G. Li, J. Osborne, L. Van Zyl, R. Sederoff, R. Finlay, J. Stenlid, F. Asiegbu

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

NMR studies of the inclusion complex of cloprostenol sodium salt with beta-cyclodextrin in aqueous solution

PHARMACEUTICAL RESEARCH, 25(5), 1142–1149.

author keywords: cloprostenol sodium salt; cyclodextrins; inclusion complexes; molecular modeling; nuclear magnetic resonance
MeSH headings : Chemical Phenomena; Chemistry, Physical; Cloprostenol / chemistry; Magnetic Resonance Spectroscopy; Models, Molecular; Solutions; beta-Cyclodextrins / chemistry
TL;DR: This is the first study of the inclusion complex of cloprostenol with β-cyclodextrin (β-CD) in aqueous solution using NMR and 3D molecular dynamics simulations and it is found that β-CD forms a 1:1 inclusion complex with clop Frostenol. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Inhibition and dispersion of proteobacterial biofilms

Chemical Communications, (14), 1698.

By: J. Richards n, R. Huigens III, T. Ballard n, A. Basso n, J. Cavanagh n & C. Melander n

MeSH headings : Biofilms / drug effects; Biofilms / growth & development; Dose-Response Relationship, Drug; Imidazoles / chemistry; Imidazoles / pharmacology; Inhibitory Concentration 50; Molecular Structure; Proteobacteria / drug effects; Proteobacteria / growth & development; Proteobacteria / physiology; Pyrroles / chemistry; Pyrroles / pharmacology
TL;DR: A small molecule derived from a marine natural product with the ability to inhibit biofilm formation and also disperse established proteobacterial biofilms is presented. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: Crossref, NC State University Libraries
Added: August 6, 2018

2008 journal article

Protein folding: Are we there yet?

Archives of Biochemistry and Biophysics, 469(1), 1–3.

By: A. Clark

Source: NC State University Libraries
Added: August 6, 2018

2008 review

Minimizing frustration by folding in an aqueous environment

[Review of ]. Archives of Biochemistry and Biophysics, 469(1), 118–131.

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Crystal structure of E47 neuroD1/Beta2 bHLH domain DNA complex: Heterodimer selectivity and DNA recognition

BIOCHEMISTRY, 47(1), 218–229.

MeSH headings : Amino Acid Sequence; Animals; Base Sequence; Basic Helix-Loop-Helix Transcription Factors / chemistry; Basic Helix-Loop-Helix Transcription Factors / metabolism; Binding Sites; Crystallography, X-Ray; DNA / chemistry; DNA / genetics; DNA / metabolism; Dimerization; Humans; Mice; Models, Molecular; Molecular Sequence Data; Nerve Tissue Proteins / chemistry; Nerve Tissue Proteins / metabolism; Protein Binding; Protein Structure, Secondary; Protein Structure, Tertiary; Sequence Homology, Amino Acid; TCF Transcription Factors / chemistry; TCF Transcription Factors / metabolism; Transcription Factor 7-Like 1 Protein
TL;DR: The crystal structure of the E47-NeuroD1-bHLH dimer in complex with the insulin promoter E-box sequence is determined and it is proposed that concerted domain motions allow E47 to form specific base contacts in solution. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Targeting RNA with cysteine-constrained peptides

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 18(2), 565–567.

By: V. Burns n, B. Bobay n, A. Basso n, J. Cavanagh n & C. Melander n

author keywords: RNA; cyclic peptides; HADDOCK
MeSH headings : Base Sequence; Cysteine / chemistry; Humans; Models, Molecular; Peptides, Cyclic / chemistry; RNA / chemistry
TL;DR: This approach has successfully identified novel cyclic peptide constructs that can target bTAR RNA and RNA/peptide interactions were effectively modeled using the HADDOCK docking program. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Characterization of a new family of protein kinases from Arabidopsis containing phosphoinositide 3/4-kinase and ubiquitin-like domains

BIOCHEMICAL JOURNAL, 409, 117–127.

author keywords: phosphoinositide kinase (PIK); phosphorylation; proteasome regulatory particle non-ATPase 10 subunit (proteasome RPN10 subunit); protein kinase; ubiquitin fusion degradation (UFD); ubiquitin-like domain (UBL domain)
MeSH headings : Adaptor Proteins, Signal Transducing / chemistry; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Catalysis; Class Ia Phosphatidylinositol 3-Kinase; Cloning, Molecular; DNA, Complementary / metabolism; Genetic Vectors; Humans; Phosphatidylinositol 3-Kinases / chemistry; Phosphatidylinositol 3-Kinases / metabolism; Phosphorylation; Phylogeny; Protein Kinases / chemistry; Protein Kinases / classification; Protein Structure, Tertiary; Recombinant Proteins / chemistry; Ubiquitin / chemistry; Ubiquitin / metabolism
TL;DR: In vitro analysis of AtPI4Kgamma4 indicates that it interacts directly with, and phosphorylates, two proteins involved in the ubiquitin-proteasome system, namely UFD1 (ubiquitin fusion degradation 1) and RPN10 (regulatory particle non-ATPase 10). (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Xenopus microRNA genes are predominantly located within introns and are diffferentially expressed in adult frog tissues via post-transcriptional regulation

GENOME RESEARCH, 18(1), 104–112.

By: G. Tang n & E. Maxwell n

MeSH headings : Animals; Genome / physiology; Humans; Introns / physiology; MicroRNAs / biosynthesis; MicroRNAs / genetics; Organ Specificity / physiology; RNA Precursors / biosynthesis; RNA Precursors / genetics; RNA Processing, Post-Transcriptional / physiology; Xenopus laevis
TL;DR: Analysis of Xenopus tropicalis miRNAs indicated that post-transcriptional processing plays an important role in regulating miRNA expression in the amphibian Xenopus. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Spectroscopic analysis of poly(bisphenol A carbonate) using high resolution C-13 and H-1 NMR

POLYMER, 49(2), 394–404.

author keywords: poly(bisphenol A carbonate); end-group analysis; NMR spectroscopy
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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