Works Published in 2010
Displaying works 21 - 40 of 41 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2010 journal article
Unambiguous determination of H-atom positions: comparing results from neutron and high-resolution X-ray crystallography
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 66(Pt 5), 558–567.
MeSH headings : Bacterial Proteins / chemistry; Crystallography, X-Ray / methods; Neutron Diffraction / methods; Pyrococcus furiosus / chemistry; Rubredoxins / chemistry; X-Ray Diffraction / methods
TL;DR:
The improved model obtained from joint XN refinement yielded improved electron-density maps, permitting the location of more D atoms than electron- density maps from models refined against X-ray data only.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2010 journal article
Structure of dehaloperoxidase B at 1.58 angstrom resolution and structural characterization of the AB dimer from Amphitrite ornata
Acta Crystallographica. Section D, Biological Crystallography, 66, 529–538.
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Structural Basis for Substrate Placement by an Archaeal Box C/D Ribonucleoprotein Particle
MOLECULAR CELL, 39(6), 939–949.
MeSH headings : Archaeal Proteins / chemistry; Archaeal Proteins / genetics; Binding Sites / physiology; Biocatalysis; Chromosomal Proteins, Non-Histone / chemistry; Chromosomal Proteins, Non-Histone / genetics; Chromosomal Proteins, Non-Histone / metabolism; Crystallography, X-Ray; Holoenzymes / chemistry; Holoenzymes / genetics; Holoenzymes / metabolism; Methyltransferases / chemistry; Methyltransferases / genetics; Methyltransferases / metabolism; Models, Molecular; Mutagenesis, Insertional / physiology; Nuclear Proteins / chemistry; Nuclear Proteins / genetics; Nucleic Acid Conformation; Protein Multimerization / physiology; Protein Structure, Quaternary / physiology; Pyrococcus furiosus / enzymology; Pyrococcus furiosus / genetics; RNA, Archaeal / chemistry; RNA, Archaeal / metabolism; RNA, Small Nucleolar / chemistry; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Ribonucleoproteins, Small Nucleolar / chemistry; Ribonucleoproteins, Small Nucleolar / genetics; Ribonucleoproteins, Small Nucleolar / metabolism; Sequence Deletion / physiology
TL;DR:
The predicted asymmetric nature of the holoenzyme is consistent with previous biochemical data on RNP assembly and provides a simple solution for accommodating base-pairing between the C/D guide RNA and large ribosomal and spliceosomal substrate RNAs.
(via Semantic Scholar)
doi.org (publisher)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism
JOURNAL OF PROTEOME RESEARCH, 9(10), 5370–5381.
author keywords: LC/MSE; plant-parasite; nematode; data-independent acquisition; computational proteome
MeSH headings : Animals; Chromatography, Liquid; Computational Biology / methods; Databases, Protein; Genome, Helminth / genetics; Helminth Proteins / genetics; Helminth Proteins / metabolism; Humans; Internet; Plant Roots / parasitology; Proteomics / methods; Tandem Mass Spectrometry; Tylenchoidea / genetics; Tylenchoidea / metabolism
TL;DR:
To experimentally confirm the HapPep3 assignments using proteomics, a data-independent LC/MS(E) analysis to M. hapla protein extracts fractionated by SDS-PAGE was applied, and it was concluded that the identified proteins reflect a true and unbiased sampling of Happep3.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Internal Binding of Halogenated Phenols in Dehaloperoxidase-Hemoglobin Inhibits Peroxidase Function
BIOPHYSICAL JOURNAL, 99(5), 1586–1595.
MeSH headings : Animals; Catalytic Domain; Crystallography, X-Ray; Enzyme Inhibitors / chemistry; Enzyme Inhibitors / metabolism; Enzyme Inhibitors / pharmacology; Halogenation; Hemoglobins / chemistry; Hemoglobins / metabolism; Iodobenzenes / chemistry; Iodobenzenes / metabolism; Iodobenzenes / pharmacology; Kinetics; Models, Molecular; Peroxidases / antagonists & inhibitors; Peroxidases / chemistry; Peroxidases / metabolism; Polychaeta / enzymology; Spectrum Analysis, Raman
TL;DR:
It is demonstrated that DHP has a unique two-site competitive binding mechanism in which the internal and external binding sites communicate through two conformations of the distal histidine of the enzyme, resulting in nonclassical competitive inhibition.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Genomics of forest and ecosystem health in the Fagaceae: meeting report
TREE GENETICS & GENOMES, 6(5), 815–820.
author keywords: Fagaceae; Genomics
TL;DR:
A summary of 35 keynote, invited and volunteer papers delivered at a recent international conference is provided, along with web links to PDFs of those presentations, for reviewing the rapidly expanding knowledge base on Fagaceae genomics.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2010 article
Evolution of the Probiotic Concept: From Conception to Validation and Acceptance in Medical Science
ADVANCES IN APPLIED MICROBIOLOGY, VOL 72, Vol. 72, pp. 1–41.
MeSH headings : Animals; Bifidobacterium; Gastrointestinal Tract / microbiology; Humans; Immunologic Factors / pharmacology; Lactobacillus; Organisms, Genetically Modified / microbiology; Probiotics / pharmacology; Probiotics / therapeutic use
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2010 journal article
X-ray structure of the metcyano form of dehaloperoxidase from Amphitrite ornata: Evidence for photoreductive dissociation of the iron-cyanide bond
Acta Crystallographica. Section D, Biological Crystallography, 66, 770–782.
Source: NC State University Libraries
Added: August 6, 2018
2010 review
The potential for caspases in drug discovery
[Review of ]. Current Opinion in Drug Discovery & Development, 13(5), 568–576.
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Insect response to alphavirus infection-Establishment of alphavirus persistence in insect cells involves inhibition of viral polyprotein cleavage
VIRUS RESEARCH, 150(1-2), 73–84.
author keywords: Arbovirus; Sindbis; Insect cells; Microarray; Persistent infection
MeSH headings : Alphavirus / pathogenicity; Alphavirus / physiology; Animals; Cell Line; Drosophila; Polyproteins / metabolism; Viral Proteins / metabolism; Virus Replication
TL;DR:
It is proposed that inefficient cleavage of the polyprotein may lead to reduced levels of virus seen as persistence is established, and the up-regulation of a wide-spectrum protease inhibitor, Thiol-ester containing Protein (TEP) II is confirmed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Commentary: Biochemistry and molecular biology educators launch national network
Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology, 38(4), 266–267.
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Combinatorial Electrostatic Collision-Induced Dissociative Chemical Cross-linking Reagents for Probing Protein Surface Topology
ANALYTICAL CHEMISTRY, 82(14), 6215–6223.
MeSH headings : Amino Acid Sequence; Animals; Cattle; Chromatography, Liquid / methods; Circular Dichroism; Cross-Linking Reagents / chemistry; Dipeptides / chemistry; Hemoglobins / chemistry; Hemoglobins / metabolism; Molecular Sequence Data; Protein Structure, Tertiary; Proteins / chemistry; Serum Albumin, Bovine / chemistry; Serum Albumin, Bovine / metabolism; Static Electricity; Tandem Mass Spectrometry / methods
TL;DR:
Overall, combinatorial application of SuDP and SuVP chemical labeling produces a set of unique interpeptid, intrapeptide, and dead-end cross-linked products that provides protein structural information according to its electrostatic surface topology which has the potential to be used to more comprehensively probe protein structure and dynamics.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2010 review
Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes
[Review of ]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163.
author keywords: Lignin systems biology; Monolignol biosynthesis; Populus trichocarpa; Promoter motifs; Transcript abundance; Xylem-specific expression
MeSH headings : Amino Acid Motifs / genetics; Biosynthetic Pathways / genetics; Enzymes / biosynthesis; Enzymes / genetics; Gene Expression Regulation, Enzymologic / physiology; Gene Expression Regulation, Plant / physiology; Genome, Plant / genetics; Lignin / biosynthesis; Lignin / genetics; Phloem / enzymology; Phloem / genetics; Plant Shoots / enzymology; Plant Shoots / genetics; Populus / genetics; Populus / metabolism; Promoter Regions, Genetic / genetics; RNA, Messenger / analysis; RNA, Messenger / genetics; RNA, Messenger / metabolism; RNA, Plant / analysis; RNA, Plant / genetics; RNA, Plant / metabolism; Transcription, Genetic / physiology; Xylem / enzymology; Xylem / genetics
TL;DR:
The identified 23 genes that most probably encode monolignol biosynthesis enzymes during wood formation are identified and evidence suggesting functional redundancy at the transcript level for phenylalanine ammonia-lyase and cinnamate 4-hydroxylase is found.
(via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Elucidation of mechanisms of the reciprocal cross talk between gonadotropin-releasing hormone and prostaglandin receptors
Endocrinology, 151(6), 2700–2712.
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Binding site on human immunoglobulin G for the affinity ligand HWRGWV
Journal of Molecular Recognition, 23(3), 271–282.
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Synergistic Effects between Conventional Antibiotics and 2-Aminoimidazole-Derived Antibiofilm Agents
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 54(5), 2112–2118.
MeSH headings : Acinetobacter baumannii / drug effects; Anti-Bacterial Agents / pharmacology; Bacteria / drug effects; Biofilms / drug effects; Calcium Chloride / pharmacology; Chlorides / pharmacology; Colistin / pharmacology; Drug Resistance, Bacterial; Drug Resistance, Multiple; Drug Synergism; Enterococcus faecium / drug effects; Erythrocytes / drug effects; Escherichia coli / drug effects; Humans; Imidazoles / chemistry; Imidazoles / pharmacology; Magnesium / pharmacology; Manganese Compounds / pharmacology; Methicillin-Resistant Staphylococcus aureus / drug effects; Novobiocin / pharmacology; Staphylococcus epidermidis / drug effects; Tobramycin / pharmacology; Triazoles / pharmacology
TL;DR:
The synergistic effect between a 2-aminoimidazole/triazole conjugate and antibiotics toward dispersing preestablished biofilms, culminating with a 3-orders-of-magnitude increase of biofilm dispersion toward Staphylococcus aureus biofilmms is reported.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Data-independent liquid chromatography/mass spectrometry (LC/MSE) detection and quantification of the secreted Apium graveolens pathogen defense protein mannitol dehydrogenase
Rapid Communications in Mass Spectrometry, 24(7), 1009–1016.
MeSH headings : Amino Acid Sequence; Apium / drug effects; Apium / enzymology; Cell Culture Techniques; Chromatography, Liquid / methods; Electrophoresis, Polyacrylamide Gel; Immunoblotting; Mannitol Dehydrogenases / chemistry; Mannitol Dehydrogenases / genetics; Mannitol Dehydrogenases / metabolism; Molecular Sequence Data; Proteome / analysis; Proteome / drug effects; Proteome / metabolism; Salicylic Acid / pharmacology; Tandem Mass Spectrometry / methods
TL;DR:
LC/MS(E) can be implemented as a discovery-driven MRM-based quantitative approach which can be used to reveal potential post-translational modifications, thus providing a new method in the area of gel-free and label-free proteomic analysis.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Use of a non-volatile 1-MCP formulation, N,N-dipropyl(1-cyclopropenylmethyl)amine, for improvement of postharvest quality of ornamental crops
Postharvest Biology and Technology, 56(2), 117–122.
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis
PLANT MOLECULAR BIOLOGY, 72(4-5), 381–395.
author keywords: Arabidopsis; Auxin; E2F transcription factors; Plant cell cycle; Plant development
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Base Sequence; Cell Cycle / genetics; Cell Proliferation; DNA, Plant / genetics; E2F Transcription Factors / genetics; E2F Transcription Factors / metabolism; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes, Plant; Indoleacetic Acids / metabolism; Molecular Sequence Data; Mutation; Plants, Genetically Modified; Protein Processing, Post-Translational
TL;DR:
The analysis of mutant and transgenic plants characterized by altered expression of E2FD/DEL2 has revealed that this atypical E2F can affect plant growth by promoting cell proliferation and repressing cell elongation and these results suggest that E2 FD/D EL2 is part of a regulatory network that controls the balance betweencell proliferation and development in Arabidopsis.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2010 journal article
Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif
RNA, 16(1), 79–90.
author keywords: box C/D snoRNA; snoRNP; kink-turn; L7Ae/L30 proteins; RNA-protein interaction
MeSH headings : Amino Acid Motifs / physiology; Amino Acid Sequence; Archaea / genetics; Archaea / metabolism; Archaeal Proteins / chemistry; Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Base Sequence; Binding Sites / genetics; Conserved Sequence; Models, Biological; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Nucleic Acid Conformation; Protein Binding / genetics; RNA, Archaeal / chemistry; RNA, Archaeal / metabolism; Ribonucleoproteins / chemistry; Ribonucleoproteins / genetics; Ribonucleoproteins / metabolism; Sequence Homology, Amino Acid
TL;DR:
These five signature amino acids are distinct for each of the L7Ae/L30 family members, suggesting an evolutionary continuum of these RNA-binding proteins for recognition of the various K-turn motifs contained in their cognate RNAs.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
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