Jeffrey A. Yoder

Ancient Fish Lineages Illuminate Toll-Like Receptor Diversification in Early Vertebrate Evolution

Carlson, K. B., Nguyen, C., Wcisel, D. J., Yoder, J. A., & Dornburg, A. (2023, April 6).

Legacy and emerging per- and polyfluoroalkyl substances suppress the neutrophil respiratory burst

JOURNAL OF IMMUNOTOXICOLOGY, 20(1).

A chromosome level genome assembly of longnose gar,Lepisosteus osseus

Mallik, R., Carlson, K. B., Wcisel, D. J., Fisk, M., Yoder, J. A., & Dornburg, A. (2022, December 22).

A highly diverse set of novel immunoglobulin-like transcript (NILT) genes in zebrafish indicates a wide range of functions with complex relationships to mammalian receptors

Wcisel, D. J., Dornburg, A., McConnell, S. C., Hernandez, K. M., Andrade, J., Jong, J. L. O., … Yoder, J. A. (2022, July 23). IMMUNOGENETICS, Vol. 7.

A highly diverse set of novel immunoglobulin-like transcript (NILT) genes in zebrafish indicates a wide range of functions with complex relationships to mammalian receptors

Wcisel, D. J., Dornburg, A., McConnell, S. C., Hernandez, K. M., Andrade, J., Jong, J. L. O., … Yoder, J. A. (2022, April 22). (Vol. 4). Vol. 4.

Knockdown of Transmembrane Protein 150A (TMEM150A) Results in Increased Production of Multiple Cytokines

JOURNAL OF INTERFERON AND CYTOKINE RESEARCH, 42(7), 336–342.

On the relationship between extant innate immune receptors and the evolutionary origins of jawed vertebrate adaptive immunity

Dornburg, A., & Yoder, J. A. (2022, January 4). IMMUNOGENETICS, Vol. 74.

Placing human gene families into their evolutionary context

[Review of ]. HUMAN GENOMICS, 16(1).

Transcriptome annotation reveals minimal immunogenetic diversity among Wyoming toads, Anaxyrus baxteri

Carlson, K. B., Wcisel, D. J., Ackerman, H. D., Romanet, J., Christiansen, E. F., Niemuth, J. N., … Yoder, J. A. (2022, April 28). CONSERVATION GENETICS, Vol. 4.

A Zebrafish Model of Metastatic Colonization Pinpoints Cellular Mechanisms of Circulating Tumor Cell Extravasation

FRONTIERS IN ONCOLOGY, 11.

From IgZ to IgT: A Call for a Common Nomenclature for Immunoglobulin Heavy Chain Genes of Ray-Finned Fish

Dornburg, A., Ota, T., Criscitiello, M. F., Salinas, I., Sunyer, J. O., Magadan, S., … Yoder, J. A. (2021, December 1).

Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system

Dornburg, A., Wcisel, D. J., Zapfe, K., Ferraro, E., Roupe-Abrams, L., Thompson, A. W., … Yoder, J. A. (2021, June 11). (Vol. 6). Vol. 6.

Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system

Immunogenetics.

Single-minded 2 is required for left-right asymmetric stomach morphogenesis

DEVELOPMENT, 148(17).

The bowfin genome illuminates the developmental evolution of ray-finned fishes

Thompson, A. W., Hawkins, M. B., Parey, E., Wcisel, D. J., Ota, T., Kawasaki, K., … Braasch, I. (2021, August 30). NATURE GENETICS, Vol. 8.

The evolution of innate immune receptors: investigating the diversity, distribution, and phylogeny of immune recognition across eukaryotes

Buckley, K. M., & Yoder, J. A. (2021, December 15). IMMUNOGENETICS, Vol. 74.

Chapter 19 - Immunology

In The Zebrafish in Biomedical Research.

In vivo assessment of respiratory burst inhibition by xenobiotic exposure using larval zebrafish

Journal of Immunotoxicology, 17(1), 94–104.

Transcriptome Ortholog Alignment Sequence Tools (TOAST) for phylogenomic dataset assembly

BMC Evolutionary Biology, 20(1).

Calcium imaging of primary canine sensory neurons: Small‐diameter neurons responsive to pruritogens and algogens

Brain and Behavior, 9.

Circulating tumor cells exit circulation while maintaining multicellularity, augmenting metastatic potential.

Journal of Cell Science.

Presence of cerebrospinal fluid antibodies associated with autoimmune encephalitis of humans in dogs with neurologic disease

Journal of Veterinary Internal Medicine, 33(5), 2175–2182.

Ligand-mediated protein degradation reveals functional conservation among sequence variants of the CUL4-type E3 ligase substrate receptor cereblon

Journal of Biological Chemistry, 293(16), 6187–6200.

Use of a specific polyclonal anti-canine TSLP antibody reveals TSLP expression in normal tissue and cell culture

Journal of Veterinary Pharmacology and Therapeutics, 41, 153–153.

Disruption of Trim9 function abrogates macrophage motility in vivo

Journal of Leukocyte Biology, 102(6), 1371–1380.

Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts

PLOS ONE, 12(6), e0179517.

Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling

Development, 144(16), 2925–2939.

Spotted Gar and the Evolution of Innate Immune Receptors

Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 328(7), 666–684.

Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution

Proceedings of the National Academy of Sciences, 113(34), E5014–E5023.

Angiopellosis as an Alternative Mechanism of Cell Extravasation

STEM CELLS, 35(1), 170–180.

Erratum: Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Nature Genetics, 48(6), 700–700.

Phage display and structural studies reveal plasticity in substrate specificity of caspase-3a from zebrafish

Protein Science, 25(11), 2076–2088.

Review of Automated Microinjection Systems for Single Cells in the Embryogenesis Stage

[Review of ]. IEEE-ASME TRANSACTIONS ON MECHATRONICS, 21(5), 2391–2404.

Single-cell transcriptional analysis of normal, aberrant, and malignant hematopoiesis in zebrafish

The Journal of Cell Biology, 213(3), 2133OIA95.

Single-cell transcriptional analysis of normal, aberrant, and malignant hematopoiesis in zebrafish

The Journal of Experimental Medicine, 213(6), 979–992.

The confounding complexity of innate immune receptors within and between teleost species

Fish & Shellfish Immunology, 53, 24–34.

The identification of additional zebrafish DICP genes reveals haplotype variation and linkage to MHC class I genes

Immunogenetics, 68(4), 295–312.

The identification of additional zebrafish DICP genes reveals haplotype variation and linkage to MHC class I genes.

http://europepmc.org/abstract/med/26801775

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Nature Genetics, 48(4), 427–437.

A nonclassical MHC class I U lineage locus in zebrafish with a null haplotypic variant

Immunogenetics, 67(9), 501–513.

Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins

PROTEOMICS, 15(15), 2678–2690.

Differential expression and ligand binding indicate alternative functions for zebrafish polymeric immunoglobulin receptor (pIgR) and a family of pIgR-like (PIGRL) proteins

Immunogenetics, 66(4), 267–279.

Multigene families of immunoglobulin domain-containing innate immune receptors in zebrafish: Deciphering the differences

Developmental & Comparative Immunology, 46(1), 24–34.

Neutralization of Mitochondrial Superoxide by Superoxide Dismutase 2 Promotes Bacterial Clearance and Regulates Phagocyte Numbers in Zebrafish

Infection and Immunity, 83(1), 430–440.

Preface to the Special Issue: Zebrafish immunity and infection models

Developmental & Comparative Immunology, 46(1), 1–2.

The MHC class I genes of zebrafish

Developmental & Comparative Immunology, 46(1), 11–23.

A Myristoylated Alanine-Rich C Kinase Substrate–Related Peptide Suppresses Cytokine mRNA and Protein Expression in LPS-Activated Canine Neutrophils

American Journal of Respiratory Cell and Molecular Biology, 48(3), 314–321.

A Semantic Model for Species Description Applied to the Ensign Wasps (Hymenoptera: Evaniidae) of New Caledonia

SYSTEMATIC BIOLOGY, 62(5), 639–659.

An ITAM in a Nonenveloped Virus Regulates Activation of NF- B, Induction of Beta Interferon, and Viral Spread

Journal of Virology, 88(5), 2572–2583.

Characterization of the Z lineage Major histocompatability complex class I genes in zebrafish

Immunogenetics, 66(3), 185–198.

Super Resolution Microscopy Reveals that Caveolin-1 Is Required for Spatial Organization of CRFB1 and Subsequent Antiviral Signaling in Zebrafish

PLoS ONE, 8(7), e68759.

Development and Characterization of Anti-Nitr9 Antibodies

Advances in Hematology, 2012, 1–9.

Genomic and functional characterization of the diverse immunoglobulin domain-containing protein (DICP) family

Genomics, 99(5), 282–291.

Myristoylated Alanine-Rich C Kinase Substrate (MARCKS) Protein Plays A Critical Role In Production Of Proinflammatory Cytokines By Isolated Canine Neutrophils

A67. ACUTE LUNG INJURY AND ACUTE RESPIRATORY DISTRESS SYNDROME: BIOLOGICAL MECHANISMS.

Surface modifications on InAs decrease indium and arsenic leaching under physiological conditions

APPLIED SURFACE SCIENCE, 261, 842–850.

A photoactivatable small-molecule inhibitor for light-controlled spatiotemporal regulation of Rho kinase in live embryos

Development, 139(2), 437–442.

Expression and function of triggering receptor expressed on myeloid cells-1 (TREM-1) on canine neutrophils

Developmental & Comparative Immunology, 35(8), 872–880.

Two Myristoylated Alanine-Rich C-Kinase Substrate (MARCKS) Paralogs are Required for Normal Development in Zebrafish

The Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology, 294(9), 1511–1524.

Photocaged Morpholino Oligomers for the Light-Regulation of Gene Function in Zebrafish and Xenopus Embryos

Journal of the American Chemical Society, 132(44), 15644–15650.

Specific Resistance to Pseudomonas aeruginosa Infection in Zebrafish Is Mediated by the Cystic Fibrosis Transmembrane Conductance Regulator

Infection and Immunity, 78(11), 4542–4550.

The phylogenetic origins of natural killer receptors and recognition: relationships, possibilities, and realities

Immunogenetics, 63(3), 123–141.

Aquatic animal models of human disease: Selected papers and recommendations from the 4th Conference

Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, 149(2), 121–128.

Developmental and tissue-specific expression of NITRs

Immunogenetics, 62(2), 117–122.

Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity

Molecular Immunology, 46(7), 1505–1516.

Form, function and phylogenetics of NITRs in bony fish

Developmental & Comparative Immunology, 33(2), 135–144.

Light-activation of gene function in mammalian cells via ribozymes

Chem. Commun., (5), 568–570.

Sp2 Is a Maternally Inherited Transcription Factor Required for Embryonic Development

Journal of Biological Chemistry, 285(6), 4153–4164.

A critical role for DAP10 and DAP12 in CD8+ T cell-mediated tissue damage in large granular lymphocyte leukemia

Blood, 113(14), 3226–3234.

Assessing infection and immunity in zebrafish

Zebrafish, 5(3), 189–191.

Clinical improvement by farnesyltransferase inhibition in NK large granular lymphocyte leukemia associated with imbalanced NK receptor signaling

Blood, 112(12), 4694–4698.

Evidence for a transposition event in a second NITR gene cluster in zebrafish

Immunogenetics, 60(5), 257–265.

Gene Silencing in Mammalian Cells with Light-Activated Antisense Agents

ChemBioChem, 9(18), 2937–2940.

The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains

BMC Evolutionary Biology, 8(1), 177.

Workshop report - assessing infection and immunity in zebrafish

Zebrafish, 5, 189–191.

Immunoglobulin variable regions in molecules exhibiting characteristics of innate and adaptive immune receptors

IMMUNOLOGIC RESEARCH, Vol. 38, pp. 294–304.

Structural characteristics of zebrafish orthologs of adaptor molecules that associate with transmembrane immune receptors

Gene, 401(1-2), 154–164.

The zebrafish activating immune receptor Nitr9 signals via Dap12

Immunogenetics, 59(10), 813–821.

Conditional Transgene and Gene Targeting Methodologies in Zebrafish

Zebrafish, 3(4), 415–429.

Immune-related, lectin-like receptors are differentially expressed in the myeloid and lymphoid lineages of zebrafish

Immunogenetics, 58(1), 31–40.

Methylation of tRNAAsp by the DNA Methyltransferase Homolog Dnmt2

Science, 311(5759), 395–398.

Role for retinoid signaling in left–right asymmetric digestive organ morphogenesis

Developmental Dynamics, 235(8), 2266–2275.

Investigating the morphology, function and genetics of cytotoxic cells in bony fish

Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, 138(3), 271–280.

On the origins of adaptive immunity: Innate immune receptors join the tale

Trends in Immunology, 25(1), 11–16.

On the origins of adaptive immunity:possible clues from the SIRP and NITR multigene families

Trends in Immunology, 25, 11–16.

Resolution of the novel immune-type receptor gene cluster in zebrafish

Proceedings of the National Academy of Sciences, 101(44), 15706–15711.

Novel Immune-type Receptor Genes and the Origins of Adaptive and Innate Immune Recognition

Integrative and Comparative Biology, 43(2), 331–337.

The Zebrafish as a Model Organism to Study Development of the Immune System

Advances in Immunology, Vol. 81, pp. 254–330.

BIVM, a Novel Gene Widely Distributed among Deuterostomes, Shares a Core Sequence with an Unusual Gene in Giardia lamblia

Genomics, 79(6), 750–755.

Cloning novel immune-type inhibitory receptors from the rainbow trout, Oncorhynchus mykiss

Immunogenetics, 54(9), 662–670.

Zebrafish as an immunological model system

[Review of ]. MICROBES AND INFECTION, 4(14), 1469–1478.

Cloning and sequence analysis of a zebrafish cDNA encoding DNA (cytosine-5)-methyltransferase-1

GENESIS, 30(4), 213–219.

Corrigendum to: “The zebrafish fth1, slc3a2, men1, pc, fgf3 and cycd1 genes define two regions of conserved synteny between linkage group 7 and human chromosome 11q13” [Gene 261 (2000) 235–242]

Gene, 269(1-2), 227.

Extraordinary variation in a diversified family of immune-type receptor genes

Proceedings of the National Academy of Sciences, 98(24), 13832–13837.

Immune-type receptor genes in zebrafish share genetic and functional properties with genes encoded by the mammalian leukocyte receptor cluster

Proceedings of the National Academy of Sciences, 98(12), 6771–6776.

Novel immune-type receptor genes

[Review of ]. IMMUNOLOGICAL REVIEWS, 181(1), 250–259.

Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA

Nucleic Acids Research, 29(2), 439–448.

Immune-Type Diversity in the Absence of Somatic Rearrangement

In Current Topics in Microbiology and Immunology (Vol. 248, pp. 271–282).

The zebrafish fth1, slc3a2, men1, pc, fgf3 and cycd1 genes define two regions of conserved synteny between linkage group 7 and human chromosome 11q13

GENE, 261(2), 235–242.

Cloning of two zebrafish cDNAs that share domains with the MHC class II-associated invariant chain

IMMUNOGENETICS, 50(1-2), 84–88.

Expanding our understanding of immunoglobulin, T-cell antigen receptor, and novel immune-type receptor genes: A subset of the immunoglobulin gene superfamily

Immunogenetics, 50(3-4), 124–133. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033380849&partnerID=MN8TOARS

Expanding our understanding of immunoglobulin, T-cell antigen receptor, and novel immune-type receptor genes: a subset of the immunoglobulin gene superfamily

[Review of ]. IMMUNOGENETICS, 50(3-4), 124–133.

A candidate mammalian DNA methyltransferase related to pmt1p of fission yeast

Human Molecular Genetics, 7(2), 279–284.

Sex-specific exons control DNA methyltransferase in mammalian germ cells

Development, 125(5), 889–897. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031889033&partnerID=MN8TOARS

Cytosine methylation and the ecology of intragenomic parasites

[Review of ]. TRENDS IN GENETICS, 13(8), 335–340.

DNA (cytosine-5)-methyltransferases in mouse cells and tissues. studies with a mechanism-based probe

Journal of Molecular Biology, 270(3), 385–395.

Genetic analysis of genomic methylation patterns in plants and mammals

Biological Chemistry, 377(10), 605–610. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029998065&partnerID=MN8TOARS

New 5′ Regions of the Murine and Human Genes for DNA (Cytosine-5)-methyltransferase

Journal of Biological Chemistry, 271(49), 31092–31097.

Cross-linking a maturation-dependent ram sperm plasma membrane antigen induces the acrosome reaction

Molecular Reproduction and Development, 29(2), 200–207.